Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy7G02519 Aquilegia oxysepala HOM05D006008 ORTHO05D007334 1.8e-183 647.5 807 100.0
TAR362G1189 Trochodendron aralioides HOM05D006008 ORTHO05D007334 7.0e-74 283.5 818 79.2
PSO384G1678 Papaver somniferum HOM05D006008 ORTHO05D007334 1.6e-65 255.8 803 71.4
Thecc.09G015100 Theobroma cacao HOM05D006008 ORTHO05D007334 1.0e-64 253.1 774 78.7
Gorai.009G063400 Gossypium raimondii HOM05D006008 ORTHO05D007334 5.5e-63 247.3 814 76.0
Gohir.D05G062300 Gossypium hirsutum HOM05D006008 ORTHO05D007334 2.8e-62 245.0 814 75.8
RcHm_v2.0_Chr6g0299351 Rosa chinensis HOM05D006008 ORTHO05D007334 2.8e-62 245.0 739 80.0
Lj7P735T18 Lonicera japonica HOM05D006008 ORTHO05D007334 1.8e-61 242.3 741 79.8
Sc09g0010690 Simmondsia chinensis HOM05D006008 ORTHO05D007334 1.5e-60 239.2 246 55.7
Migut.A00359 Erythranthe guttata HOM05D006008 ORTHO05D007334 2.0e-60 238.8 223 59.2
arahy.Tifrunner.gnm1.ann1.E59C1E Arachis hypogaea HOM05D006008 ORTHO05D007334 3.7e-59 234.6 204 60.8
Dinv08184 Davidia involucrata HOM05D006008 ORTHO05D007334 4.9e-59 234.2 245 55.9
CSS0033722 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 8.3e-59 233.4 204 63.2
Gohir.A05G060100 Gossypium hirsutum HOM05D006008 ORTHO05D007334 8.3e-59 233.4 811 75.0
Manes.08G047700 Manihot esculenta HOM05D006008 ORTHO05D007334 1.4e-58 232.6 245 55.5
Atru.chr7.2558 Acer truncatum HOM05D006008 ORTHO05D007334 1.8e-58 232.3 810 75.2
Sabra06G0206900 Salix brachista HOM05D006008 ORTHO05D007334 3.1e-58 231.5 196 61.7
Potri.006G264800 Populus trichocarpa HOM05D006008 ORTHO05D007334 5.4e-58 230.7 196 61.2
Haze_21405 Corylus avellana HOM05D006008 ORTHO05D007334 9.2e-58 229.9 206 61.7
arahy.Tifrunner.gnm1.ann1.HZWF25 Arachis hypogaea HOM05D006008 ORTHO05D007334 1.2e-57 229.6 203 59.6
Cpa.g.sc148.18 Carica papaya HOM05D006008 ORTHO05D007334 2.0e-57 228.8 207 59.9
MELO3C032315.2 Cucumis melo HOM05D006008 ORTHO05D007334 3.5e-57 228.0 738 79.9
Cfa013044 Carpinus fangiana HOM05D006008 ORTHO05D007334 4.5e-57 227.6 239 56.1
Duzib187G0883 Durio zibethinus HOM05D006008 ORTHO05D007334 7.8e-57 226.9 238 53.4
Lsat_1_v5_gn_2_36140 Lactuca sativa HOM05D006008 ORTHO05D007334 7.8e-57 226.9 246 52.8
CSS0011965 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 1.0e-56 226.5 151 74.8
CSS0032373 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 1.0e-56 226.5 151 74.8
FAN27G1628 Fragaria x ananassa HOM05D006008 ORTHO05D007334 1.7e-56 225.7 738 79.1
Actinidia23109 Actinidia chinensis HOM05D006008 ORTHO05D007334 2.3e-56 225.3 247 52.6
Hund20025 Selenicereus undatus HOM05D006008 ORTHO05D007334 2.3e-56 225.3 248 49.6
QL02p018792 Quercus lobata HOM05D006008 ORTHO05D007334 5.0e-56 224.2 170 68.2
DCAR_022863 Daucus carota HOM05D006008 ORTHO05D007334 6.6e-56 223.8 242 53.3
TWI63G1661 Tripterygium wilfordii HOM05D006008 ORTHO05D007334 8.6e-56 223.4 213 56.3
FvH4_2g41180 Fragaria vesca HOM05D006008 ORTHO05D007334 1.1e-55 223.0 738 79.3
PGR142G1849 Punica granatum HOM05D006008 ORTHO05D007334 2.5e-55 221.9 247 53.4
Nitab4.5_0000147g0080 Nicotiana tabacum HOM05D006008 ORTHO05D007334 3.3e-55 221.5 201 58.7
ATR0580G290 Amborella trichopoda HOM05D006008 ORTHO05D007334 4.3e-55 221.1 171 64.9
Peaxi162Scf01286g00125 Petunia axillaris HOM05D006008 ORTHO05D007334 5.6e-55 220.7 161 67.1
SalBow4G1429 Salvia bowleyana HOM05D006008 ORTHO05D007334 1.6e-54 219.2 240 54.2
CSS0025914 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 2.1e-54 218.8 164 70.1
FAN15G1576 Fragaria x ananassa HOM05D006008 ORTHO05D007334 2.1e-54 218.8 168 64.3
Rhsim07G0155900 Rhododendron simsii HOM05D006008 ORTHO05D007334 2.1e-54 218.8 206 59.2
FAN20G2406 Fragaria x ananassa HOM05D006008 ORTHO05D007334 2.8e-54 218.4 169 63.9
PGSC0003DMG400027232 Solanum tuberosum HOM05D006008 ORTHO05D007334 6.1e-54 217.2 172 62.2
Phvul.009G086500 Phaseolus vulgaris HOM05D006008 ORTHO05D007334 8.0e-54 216.9 207 56.5
Solyc04g015440.4 Solanum lycopersicum HOM05D006008 ORTHO05D007334 1.4e-53 216.1 171 62.6
Sopen04g007490 Solanum pennellii HOM05D006008 ORTHO05D007334 1.4e-53 216.1 171 62.6
ClCG05G016190 Citrullus lanatus HOM05D006008 ORTHO05D007334 1.8e-53 215.7 170 60.6
CANSAT54G1994 Cannabis sativa HOM05D006008 ORTHO05D007334 2.3e-53 215.3 243 51.9
CAN.G676.42 Capsicum annuum HOM05D006008 ORTHO05D007334 2.3e-53 215.3 172 61.6
AUR62041936 Chenopodium quinoa HOM05D006008 ORTHO05D007334 2.3e-53 215.3 198 59.6
ECA234G3283 Erigeron canadensis HOM05D006008 ORTHO05D007334 2.3e-53 215.3 208 59.1
vmacro05220 Vaccinium macrocarpon HOM05D006008 ORTHO05D007334 4.0e-53 214.5 247 51.8
Lalb_Chr23g0268201 Lupinus albus HOM05D006008 ORTHO05D007334 6.8e-53 213.8 205 55.6
VMungo1309G2388 Vigna mungo HOM05D006008 ORTHO05D007334 6.8e-53 213.8 207 54.1
CANSAT56G1562 Cannabis sativa HOM05D006008 ORTHO05D007334 8.9e-53 213.4 215 54.9
SGA_v2.0_scaffold147G36344 Striga asiatica HOM05D006008 ORTHO05D007334 1.2e-52 213.0 237 51.9
Glyma.06G061000 Glycine max HOM05D006008 ORTHO05D007334 2.0e-52 212.2 248 49.2
CANSAT21G0760 Cannabis sativa HOM05D006008 ORTHO05D007334 8.3e-51 206.8 210 54.3
Medtr3g105900 Medicago truncatula HOM05D006008 ORTHO05D007334 1.1e-50 206.5 254 48.4
CANSAT21G2303 Cannabis sativa HOM05D006008 ORTHO05D007334 1.4e-50 206.1 170 61.2
CANSAT80G2648 Cannabis sativa HOM05D006008 ORTHO05D007334 1.4e-50 206.1 224 52.2
TPR.G1871 Trifolium pratense HOM05D006008 ORTHO05D007334 2.4e-50 205.3 819 71.9
Psat5g033520 Pisum sativum HOM05D006008 ORTHO05D007334 5.4e-50 204.1 817 72.7
CANSAT54G0183 Cannabis sativa HOM05D006008 ORTHO05D007334 7.0e-50 203.8 245 47.8
MD08G1055800 Malus domestica HOM05D006008 ORTHO05D007334 7.0e-50 203.8 812 74.1
Ah.04g163370 Amaranthus hybridus HOM05D002153 ORTHO05D002137 9.2e-50 203.4 165 63.0
Sed0007713 Sechium edule HOM05D006008 ORTHO05D007334 9.2e-50 203.4 737 78.2
BraA03t15143Z Brassica rapa HOM05D006008 ORTHO05D007334 2.0e-49 202.2 236 50.0
arahy.Tifrunner.gnm1.ann1.6M8E1A Arachis hypogaea HOM05D006008 ORTHO05D007334 3.5e-49 201.4 186 57.0
Ca_15782_v3 Cicer arietinum L. HOM05D006008 ORTHO05D007334 1.7e-48 199.1 172 58.1
CDE02G3851 Ceratophyllum demersum HOM05D006008 ORTHO05D007334 2.3e-48 198.7 217 51.2
Nn7g36097 Nelumbo nucifera HOM05D006008 ORTHO05D007334 3.0e-48 198.4 207 55.6
Lj1g0008194 Lotus japonicus HOM05D006008 ORTHO05D007334 1.1e-47 196.4 168 59.5
CSS0030467 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 5.6e-47 194.1 146 67.1
arahy.Tifrunner.gnm1.ann1.83E5X5 Arachis hypogaea HOM05D006008 ORTHO05D007334 9.5e-47 193.4 185 56.2
CANSAT80G0905 Cannabis sativa HOM05D006008 ORTHO05D007334 9.5e-47 193.4 241 46.9
THA.LOC104803618 Tarenaya hassleriana HOM05D006008 ORTHO05D007334 1.2e-46 193.0 199 50.8
CSS0018849 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 2.1e-46 192.2 194 56.7
CSS0002096 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 4.7e-46 191.0 209 54.1
CSS0046362 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 1.4e-45 189.5 202 55.0
Prupe.1G394600 Prunus persica HOM05D006008 ORTHO05D007334 2.0e-44 185.7 769 76.1
Nn7g36096 Nelumbo nucifera HOM05D006008 ORTHO05D007334 4.4e-44 184.5 151 57.6
MBI15_g18236_MAGBIO Magnolia biondii HOM05D006008 ORTHO05D007334 7.5e-44 183.7 203 54.2
CiPaw.08G005700 Carya illinoinensis HOM05D006008 ORTHO05D007334 1.3e-43 183.0 120 77.5
HanXRQChr09g0270581 Helianthus annuus HOM05D006008 ORTHO05D007334 2.2e-43 182.2 139 63.3
Aa31LG2G18380 Aethionema arabicum HOM05D006008 ORTHO05D007334 6.4e-43 180.6 163 58.3
Nitab4.5_0001663g0180 Nicotiana tabacum HOM05D006008 ORTHO05D007334 4.1e-42 177.9 122 72.1
A03p61020 Brassica napus HOM05D006008 ORTHO05D007334 7.0e-42 177.2 217 48.4
C07p58920 Brassica napus HOM05D006008 ORTHO05D007334 1.6e-41 176.0 208 50.5
BolC7t46339H Brassica oleracea HOM05D006008 ORTHO05D007334 1.6e-41 176.0 208 50.5
COL.COLO4_18956 Corchorus olitorius HOM05D006008 ORTHO05D007334 1.6e-41 176.0 159 51.6
Oeu001622.3 Olea europaea HOM05D006008 ORTHO05D007334 2.7e-41 175.3 122 72.1
AL7G20130 Arabidopsis lyrata HOM05D006008 ORTHO05D007334 3.9e-40 171.4 144 60.4
Carub.0007s0870 Capsella rubella HOM05D006008 ORTHO05D007334 3.3e-39 168.3 151 55.6
CsaV3_4G036480 Cucumis sativus L. HOM05D006008 ORTHO05D007334 4.3e-39 167.9 152 50.0
Eucgr.C01897 Eucalyptus grandis HOM05D006008 ORTHO05D007334 7.3e-39 167.2 678 82.9
Lalb_Chr23g0268191 Lupinus albus HOM05D006008 ORTHO05D007334 9.5e-39 166.8 156 51.3
Glyma.04G060500 Glycine max HOM05D006008 ORTHO05D007334 1.2e-38 166.4 164 48.8
BcaNung01494 Brassica carinata HOM05D006008 ORTHO05D007334 2.1e-38 165.6 220 45.9
FAN20G1003 Fragaria x ananassa HOM05D006008 ORTHO05D007334 3.6e-38 164.9 154 48.7
GSVIVG01035975001 Vitis vinifera HOM05D006008 ORTHO05D007334 3.6e-38 164.9 195 52.3
Thhalv10024264m.g Eutrema salsugineum HOM05D006008 ORTHO05D007334 2.3e-37 162.2 174 51.1
Cc08_g07210 Coffea canephora HOM05D006008 ORTHO05D007334 4.0e-37 161.4 218 45.4
CARHR239780 Cardamine hirsuta HOM05D006008 ORTHO05D007334 3.4e-36 158.3 216 47.7
CSS0013958 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 4.4e-36 157.9 130 64.6
Nn7g37618 Nelumbo nucifera HOM05D006008 ORTHO05D007334 5.8e-36 157.5 185 51.4
HPP92_017173 Vanilla planifolia HOM05D006008 ORTHO05D007334 1.7e-35 156.0 150 48.0
MSTRG.11782 Avicennia marina HOM05D006008 ORTHO05D007334 2.9e-35 155.2 148 46.6
Sp7g29660 Schrenkiella parvula HOM05D006008 ORTHO05D007334 1.1e-34 153.3 142 54.2
Ciclev10007356m.g Citrus clementina HOM05D006008 ORTHO05D007334 9.2e-34 150.2 109 67.9
CSS0039067 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 3.5e-33 148.3 164 54.3
ATR0180G020 Amborella trichopoda HOM05D006008 ORTHO05D007334 7.8e-33 147.1 165 48.5
BraA01t00604Z Brassica rapa HOM05D006008 ORTHO05D007334 7.8e-33 147.1 213 42.3
A01p06430 Brassica napus HOM05D006008 ORTHO05D007334 1.0e-32 146.7 219 42.9
AT4G31850 Arabidopsis thaliana HOM05D006008 ORTHO05D007334 1.7e-32 146.0 131 57.3
EL10Ac4g08536 Beta vulgaris HOM05D006008 ORTHO05D007334 8.6e-32 143.7 159 52.8
Zm00001eb393290 Zea mays HOM05D006008 ORTHO05D007334 1.5e-31 142.9 133 51.9
Os10g0421800 Oryza sativa ssp. japonica HOM05D006008 ORTHO05D007334 3.3e-31 141.7 152 47.4
BcaC09g51977 Brassica carinata HOM05D006008 ORTHO05D007334 5.6e-31 141.0 217 41.5
BcaNung03118 Brassica carinata HOM05D006008 ORTHO05D007334 5.6e-31 141.0 150 49.3
C01p07070 Brassica napus HOM05D006008 ORTHO05D007334 5.6e-31 141.0 216 42.6
SEGI_41266 Sequoiadendron giganteum HOM05D006008 ORTHO05D007334 8.1e-30 137.1 164 49.4
AUR62041257 Chenopodium quinoa HOM05D006008 ORTHO05D007334 7.6e-28 130.6 152 43.4
CSS0031354 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 1.3e-27 129.8 112 50.9
SEGI_02316 Sequoiadendron giganteum HOM05D006008 ORTHO05D007334 5.6e-23 114.4 130 48.5
CANSAT21G2219 Cannabis sativa HOM05D006008 ORTHO05D007334 1.2e-22 113.2 115 56.5
BolC1t00699H Brassica oleracea HOM05D006008 ORTHO05D007334 6.2e-22 110.9 215 36.7
BcaNung03117 Brassica carinata HOM05D006008 ORTHO05D007334 7.6e-12 77.4 152 38.2
PGR083G0367 Punica granatum HOM05D002453 ORTHO05D002107 1.9e-07 62.8 164 25.6
Prupe.5G192300 Prunus persica HOM05D002453 ORTHO05D002107 3.3e-07 62.0 156 26.9
HPP92_026434 Vanilla planifolia HOM05D002453 ORTHO05D002107 3.3e-07 62.0 164 26.2
CsaV3_1G005400 Cucumis sativus L. HOM05D002453 ORTHO05D002107 5.6e-07 61.2 149 26.8
HanXRQChr16g0518411 Helianthus annuus HOM05D002453 ORTHO05D002107 5.6e-07 61.2 146 28.8
Atru.chr9.2259 Acer truncatum HOM05D002453 ORTHO05D002107 7.4e-07 60.8 164 24.4
QL04p089735 Quercus lobata HOM05D022192 ORTHO05D009908 7.4e-07 60.8 40 75.0
BcaC07g37716 Brassica carinata HOM05D000001 ORTHO05D009689 9.6e-07 60.5 131 29.0
BcaC08g46987 Brassica carinata HOM05D002453 ORTHO05D002107 9.6e-07 60.5 164 23.8
AL7G42380 Arabidopsis lyrata HOM05D000001 ORTHO05D009689 1.3e-06 60.1 131 28.2
Ah.11g048530 Amaranthus hybridus HOM05D002453 ORTHO05D002107 1.6e-06 59.7 164 23.8
AT4G14050 Arabidopsis thaliana HOM05D000001 ORTHO05D009689 1.6e-06 59.7 131 28.2
BcaB04g18109 Brassica carinata HOM05D000001 ORTHO05D009689 2.1e-06 59.3 131 27.5
Lsat_1_v5_gn_1_13300 Lactuca sativa HOM05D002453 ORTHO05D002107 2.1e-06 59.3 167 24.6
VMungo0647G1609 Vigna mungo HOM05D002453 ORTHO05D002107 2.1e-06 59.3 164 23.8
FAN08G1232 Fragaria x ananassa HOM05D002453 ORTHO05D002107 2.8e-06 58.9 132 28.0
Lj5C111T12 Lonicera japonica HOM05D002453 ORTHO05D002107 2.8e-06 58.9 164 26.8
Aa31LG9G3310 Aethionema arabicum HOM05D000001 ORTHO05D009689 3.7e-06 58.5 131 28.2
CAN.G1456.8 Capsicum annuum HOM05D002453 ORTHO05D002107 3.7e-06 58.5 141 25.5
Nitab4.5_0000026g0050 Nicotiana tabacum HOM05D002453 ORTHO05D002107 3.7e-06 58.5 141 25.5
Nitab4.5_0005983g0010 Nicotiana tabacum HOM05D002453 ORTHO05D002107 3.7e-06 58.5 141 24.8
Thecc.04G193300 Theobroma cacao HOM05D000001 ORTHO05D009689 3.7e-06 58.5 131 25.2
MSTRG.23026 Avicennia marina HOM05D002453 ORTHO05D002107 4.8e-06 58.2 141 26.2
AUR62021699 Chenopodium quinoa HOM05D002453 ORTHO05D002107 4.8e-06 58.2 146 27.4
FAN18G2707 Fragaria x ananassa HOM05D002453 ORTHO05D002107 6.2e-06 57.8 132 28.0
Psat6g067680 Pisum sativum HOM05D000855 ORTHO05D008530 6.2e-06 57.8 148 26.4
THA.LOC104807228 Tarenaya hassleriana HOM05D003056 ORTHO05D003422 6.2e-06 57.8 112 29.5
Glyma.06G057900 Glycine max HOM05D000001 ORTHO05D000003 8.1e-06 57.4 178 25.3


User provided reference genes

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