Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy7G02403 Aquilegia oxysepala HOM05D005191 ORTHO05D006725 0.0e+00 1432.5 727 100.0
TAR625G1134 Trochodendron aralioides HOM05D005191 ORTHO05D006725 0.0e+00 1174.5 720 81.5
Nn2g12129 Nelumbo nucifera HOM05D005191 ORTHO05D006725 0.0e+00 1123.6 706 79.3
PSO170G6846 Papaver somniferum HOM05D005191 ORTHO05D006725 0.0e+00 1112.8 703 78.0
PSO017G2350 Papaver somniferum HOM05D005191 ORTHO05D006725 0.0e+00 1111.7 703 77.8
QL02p090053 Quercus lobata HOM05D005191 ORTHO05D006725 0.0e+00 1083.9 705 75.6
CiPaw.03G249200 Carya illinoinensis HOM05D005191 ORTHO05D006725 9.9e-311 1069.7 706 75.1
Cfa002299 Carpinus fangiana HOM05D005191 ORTHO05D006725 1.6e-305 1052.4 706 74.5
Thecc.09G133700 Theobroma cacao HOM05D005191 ORTHO05D006725 5.3e-304 1047.3 706 72.8
CSS0021683 Camellia sinensis var. sinensis HOM05D005191 ORTHO05D006725 3.4e-303 1044.6 726 72.0
Ciclev10007583m.g Citrus clementina HOM05D005191 ORTHO05D006725 1.9e-301 1038.9 706 72.2
Prupe.7G249300 Prunus persica HOM05D005191 ORTHO05D006725 2.4e-301 1038.5 706 72.8
Gorai.004G107900 Gossypium raimondii HOM05D005191 ORTHO05D006725 5.4e-301 1037.3 706 72.1
Potri.006G065000 Populus trichocarpa HOM05D005191 ORTHO05D006725 9.3e-301 1036.6 704 72.6
Gohir.A08G088900 Gossypium hirsutum HOM05D005191 ORTHO05D006725 2.1e-300 1035.4 706 72.0
MD15G1165500 Malus domestica HOM05D005191 ORTHO05D006725 5.6e-298 1027.3 719 70.9
MD02G1022800 Malus domestica HOM05D005191 ORTHO05D006725 1.8e-296 1022.3 706 70.8
RcHm_v2.0_Chr2g0087561 Rosa chinensis HOM05D005191 ORTHO05D006725 2.0e-295 1018.8 706 71.1
Sc18g0000280 Simmondsia chinensis HOM05D005191 ORTHO05D006725 7.6e-295 1016.9 706 71.0
CANSAT11G2540 Cannabis sativa HOM05D005191 ORTHO05D006725 1.9e-293 1012.3 716 69.3
COL.COLO4_15579 Corchorus olitorius HOM05D005191 ORTHO05D006725 2.4e-293 1011.9 706 71.4
Lj7A435G51 Lonicera japonica HOM05D005191 ORTHO05D006725 3.0e-291 1005.0 725 69.7
TWI63G0111 Tripterygium wilfordii HOM05D005191 ORTHO05D006725 6.7e-291 1003.8 706 70.1
Potri.018G125171 Populus trichocarpa HOM05D005191 ORTHO05D006725 8.7e-291 1003.4 706 71.0
FvH4_1g02530 Fragaria vesca HOM05D005191 ORTHO05D006725 1.9e-290 1002.3 706 70.0
Potri.T124807 Populus trichocarpa HOM05D005191 ORTHO05D006725 4.3e-290 1001.1 706 70.8
FAN19G1407 Fragaria x ananassa HOM05D005191 ORTHO05D006725 7.4e-290 1000.3 706 69.8
FAN26G1428 Fragaria x ananassa HOM05D005191 ORTHO05D006725 5.3e-288 994.2 706 69.4
Rhsim03G0251800 Rhododendron simsii HOM05D005191 ORTHO05D006725 5.3e-288 994.2 713 70.1
FAN23G0864 Fragaria x ananassa HOM05D005191 ORTHO05D006725 1.2e-287 993.0 706 69.4
FAN28G1162 Fragaria x ananassa HOM05D005191 ORTHO05D006725 7.6e-287 990.3 701 69.5
AUR62013300 Chenopodium quinoa HOM05D005191 ORTHO05D006725 1.1e-285 986.5 711 68.6
Glyma.17G110600 Glycine max HOM05D005191 ORTHO05D006725 3.5e-284 981.5 706 68.7
TWI32G0152 Tripterygium wilfordii HOM05D005191 ORTHO05D006725 6.0e-284 980.7 706 68.4
Gohir.D08G100100 Gossypium hirsutum HOM05D005191 ORTHO05D006725 1.0e-283 979.9 663 72.4
Sopen07g001100 Solanum pennellii HOM05D005191 ORTHO05D006725 1.0e-283 979.9 707 67.3
CAN.G1663.1 Capsicum annuum HOM05D005191 ORTHO05D006725 1.8e-283 979.2 706 67.6
Eucgr.E03534 Eucalyptus grandis HOM05D005191 ORTHO05D006725 2.3e-283 978.8 717 68.2
ECA236G3625 Erigeron canadensis HOM05D005191 ORTHO05D006725 3.7e-281 971.5 707 67.9
Glyma.13G160800 Glycine max HOM05D005191 ORTHO05D006725 3.7e-281 971.5 707 68.3
MSTRG.26350 Avicennia marina HOM05D005191 ORTHO05D006725 1.8e-280 969.1 705 67.4
Cc06_g08000 Coffea canephora HOM05D005191 ORTHO05D006725 7.6e-279 963.8 707 67.3
Cc06_g08010 Coffea canephora HOM05D005191 ORTHO05D006725 7.6e-279 963.8 707 67.3
Sed0022210 Sechium edule HOM05D005191 ORTHO05D006725 7.6e-279 963.8 706 68.0
Lsat_1_v5_gn_8_61061 Lactuca sativa HOM05D005191 ORTHO05D006725 1.0e-278 963.4 689 67.9
Phvul.003G169500 Phaseolus vulgaris HOM05D005191 ORTHO05D006725 2.9e-278 961.8 727 66.0
Sabra18G0106500 Salix brachista HOM05D005191 ORTHO05D006725 2.5e-277 958.7 730 66.7
Lalb_Chr12g0198261 Lupinus albus HOM05D005191 ORTHO05D006725 3.2e-277 958.4 719 66.8
Nitab4.5_0000374g0090 Nicotiana tabacum HOM05D005191 ORTHO05D006725 3.6e-276 954.9 690 66.8
HanXRQChr05g0143851 Helianthus annuus HOM05D005191 ORTHO05D006725 7.9e-276 953.7 726 66.5
Solyc07g007810.3 Solanum lycopersicum HOM05D005191 ORTHO05D006725 3.0e-275 951.8 707 66.1
CsaV3_1G027890 Cucumis sativus L. HOM05D005191 ORTHO05D006725 5.1e-275 951.0 706 67.4
SGA_v2.0_scaffold63G21813 Striga asiatica HOM05D005191 ORTHO05D006725 6.7e-275 950.7 705 67.0
VMungo1215G2132 Vigna mungo HOM05D005191 ORTHO05D006725 8.8e-275 950.3 727 65.5
THA.LOC104826555 Tarenaya hassleriana HOM05D005191 ORTHO05D006725 2.5e-274 948.7 707 65.1
Cpa.g.sc46.51 Carica papaya HOM05D005191 ORTHO05D006725 7.4e-274 947.2 706 67.4
Migut.K00420 Erythranthe guttata HOM05D005191 ORTHO05D006725 2.2e-273 945.7 708 65.3
arahy.Tifrunner.gnm1.ann1.0L2UMW Arachis hypogaea HOM05D005191 ORTHO05D006725 2.8e-273 945.3 706 65.7
Manes.06G046300 Manihot esculenta HOM05D005191 ORTHO05D006725 2.8e-273 945.3 706 66.3
arahy.Tifrunner.gnm1.ann1.W0WM15 Arachis hypogaea HOM05D005191 ORTHO05D006725 6.9e-272 940.6 706 65.6
Peaxi162Scf00088g01225 Petunia axillaris HOM05D005191 ORTHO05D006725 1.0e-270 936.8 707 65.2
EL10Ac8g18733 Beta vulgaris HOM05D005191 ORTHO05D006725 5.5e-269 931.0 818 59.8
ATR0800G098 Amborella trichopoda HOM05D005191 ORTHO05D006725 9.4e-269 930.2 661 69.4
Duzib150G0407 Durio zibethinus HOM05D005191 ORTHO05D006725 2.1e-268 929.1 712 67.0
ClCG06G011590 Citrullus lanatus HOM05D005191 ORTHO05D006725 2.3e-267 925.6 757 63.0
Lj4g0015768 Lotus japonicus HOM05D005191 ORTHO05D006725 2.0e-266 922.5 711 64.7
Dinv41468 Davidia involucrata HOM05D005191 ORTHO05D006725 6.3e-265 917.5 580 77.4
Psat4g036440 Pisum sativum HOM05D005191 ORTHO05D006725 4.1e-264 914.8 706 64.4
Hund26552 Selenicereus undatus HOM05D005191 ORTHO05D006725 7.7e-263 910.6 706 65.2
AUR62011184 Chenopodium quinoa HOM05D005191 ORTHO05D006725 1.1e-261 906.7 723 63.5
TPR.G7618 Trifolium pratense HOM05D005191 ORTHO05D006725 1.4e-256 889.8 695 63.9
Aa31LG8G12200 Aethionema arabicum HOM05D005191 ORTHO05D006725 3.6e-252 875.2 707 61.5
PGR142G3543 Punica granatum HOM05D005191 ORTHO05D006725 5.7e-250 867.8 709 63.6
Sp3g26260 Schrenkiella parvula HOM05D005191 ORTHO05D006725 1.8e-248 862.8 707 60.4
A06p26710 Brassica napus HOM05D005191 ORTHO05D006725 1.2e-244 850.1 708 60.2
DCAR_009327 Daucus carota HOM05D005191 ORTHO05D006725 2.3e-243 845.9 718 61.4
Nitab4.5_0005159g0010 Nicotiana tabacum HOM05D005191 ORTHO05D006725 2.0e-242 842.8 615 65.7
BcaB02g10775 Brassica carinata HOM05D005191 ORTHO05D006725 3.4e-242 842.0 708 59.9
BcaC01g02222 Brassica carinata HOM05D005191 ORTHO05D006725 1.3e-241 840.1 708 60.0
C03p67700 Brassica napus HOM05D005191 ORTHO05D006725 1.3e-241 840.1 708 60.0
Actinidia26371 Actinidia chinensis HOM05D005191 ORTHO05D006725 8.3e-241 837.4 706 62.9
AL3G44790 Arabidopsis lyrata HOM05D005191 ORTHO05D006725 2.4e-240 835.9 721 59.2
AT2G11000 Arabidopsis thaliana HOM05D005191 ORTHO05D006725 2.4e-240 835.9 709 59.8
BolSC21t60229H Brassica oleracea HOM05D005191 ORTHO05D006725 3.1e-240 835.5 712 59.4
Carub.0003s2755 Capsella rubella HOM05D005191 ORTHO05D006725 2.9e-238 828.9 709 59.4
Atru.chr7.1956 Acer truncatum HOM05D005191 ORTHO05D006725 1.8e-235 819.7 532 74.2
Medtr4g115450 Medicago truncatula HOM05D005191 ORTHO05D006725 8.9e-227 790.8 601 65.4
BraA06t25606Z Brassica rapa HOM05D005191 ORTHO05D006725 2.2e-225 786.2 723 56.4
SEGI_14008 Sequoiadendron giganteum HOM05D005191 ORTHO05D006725 3.0e-214 749.2 717 56.3
MELO3C010304.2 Cucumis melo HOM05D005191 ORTHO05D006725 3.1e-211 739.2 721 55.9
Thhalv10022576m.g Eutrema salsugineum HOM05D005191 ORTHO05D006725 3.9e-206 722.2 609 59.8
SalBow1G1849 Salvia bowleyana HOM05D005191 ORTHO05D006725 2.4e-200 703.0 622 57.2
GSVIVG01015604001 Vitis vinifera HOM05D005191 ORTHO05D006725 5.1e-198 695.3 474 74.3
vmacro06157 Vaccinium macrocarpon HOM05D005191 ORTHO05D006725 1.9e-189 666.8 455 71.9
HPP92_010843 Vanilla planifolia HOM05D005191 ORTHO05D006725 2.4e-187 659.8 451 70.5
Mapoly0005s0239 Marchantia polymorpha HOM05D005191 ORTHO05D006725 9.0e-187 657.9 737 48.2
Ah.14g079340 Amaranthus hybridus HOM05D005191 ORTHO05D006725 7.6e-186 654.8 458 69.2
Pp3c26_8550 Physcomitrium patens HOM05D005191 ORTHO05D006725 4.0e-179 632.5 730 47.7
CARHR104890 Cardamine hirsuta HOM05D005191 ORTHO05D006725 7.9e-175 618.2 447 67.8
Zm00001eb192130 Zea mays HOM05D005191 ORTHO05D006725 1.5e-170 604.0 409 70.4
Oeu052176.1 Olea europaea HOM05D005191 ORTHO05D006725 3.8e-169 599.4 473 62.4
AagrBONN_evm.TU.Sc2ySwM_344.2372 Anthoceros agrestis HOM05D005191 ORTHO05D006725 2.9e-161 573.2 690 46.4
Haze_25489 Corylus avellana HOM05D005191 ORTHO05D006725 2.7e-159 566.6 428 68.5
Hund26401 Selenicereus undatus HOM05D005191 ORTHO05D006725 1.8e-155 553.9 480 59.0
Os02g0803250 Oryza sativa ssp. japonica HOM05D005191 ORTHO05D006725 3.0e-150 536.6 682 45.3
Ca_21665_v3 Cicer arietinum L. HOM05D005191 ORTHO05D006725 6.7e-150 535.4 387 67.2
unitig_0.g2715 Utricularia gibba HOM05D005191 ORTHO05D006725 4.5e-138 496.1 403 63.0
SMO174G0034 Selaginella moellendorffii HOM05D005191 ORTHO05D006725 3.2e-128 463.4 736 39.3
CBR_g29413 Chara braunii HOM05D005191 ORTHO05D006725 6.1e-127 459.1 748 39.0
CDE05G1862 Ceratophyllum demersum HOM05D005191 ORTHO05D006725 1.2e-125 454.9 366 62.6
Haze_25491 Corylus avellana HOM05D005191 ORTHO05D006725 1.5e-125 454.5 381 63.3
Actinidia38723 Actinidia chinensis HOM05D005191 ORTHO05D006725 3.9e-113 413.3 294 71.1
Sabra06G0047500 Salix brachista HOM05D005191 ORTHO05D006725 9.5e-104 382.1 308 62.7
Ca_06948_v3 Cicer arietinum L. HOM05D005191 ORTHO05D006725 6.4e-100 369.4 324 58.6
GSVIVG01002648001 Vitis vinifera HOM05D005191 ORTHO05D006725 1.5e-88 331.6 194 83.5
Psat6g224720 Pisum sativum HOM05D005191 ORTHO05D006725 1.4e-70 271.9 192 66.1
vmacro06156 Vaccinium macrocarpon HOM05D005191 ORTHO05D006725 7.6e-69 266.2 245 58.0
FAN06G0842 Fragaria x ananassa HOM05D005191 ORTHO05D006725 1.6e-50 205.3 315 41.6
CDE05G1976 Ceratophyllum demersum HOM05D005191 ORTHO05D006725 1.3e-49 202.2 159 63.5
Rhsim13G0106800 Rhododendron simsii HOM05D005191 ORTHO05D006725 1.6e-42 178.7 152 63.2
Nitab4.5_0005159g0020 Nicotiana tabacum HOM05D005191 ORTHO05D006725 4.7e-34 150.6 113 67.3
TPR.G8947 Trifolium pratense HOM05D005191 ORTHO05D006725 1.4e-33 149.1 106 66.0
unitig_0.g2716 Utricularia gibba HOM05D005191 ORTHO05D006725 1.8e-33 148.7 150 53.3
Actinidia38722 Actinidia chinensis HOM05D005191 ORTHO05D006725 4.8e-31 140.6 162 49.4
PRCOL_00001705 Prasinoderma coloniale HOM05D005191 ORTHO05D006725 7.0e-30 136.7 569 25.5
Cre06.g300650 Chlamydomonas reinhardtii HOM05D005191 ORTHO05D006725 2.0e-29 135.2 592 25.8
FAN06G5005 Fragaria x ananassa HOM05D005191 ORTHO05D006725 2.5e-27 128.3 267 34.5
FvH4_7g23890 Fragaria vesca HOM05D005191 ORTHO05D006725 2.1e-26 125.2 150 44.7
FAN10G4062 Fragaria x ananassa HOM05D005191 ORTHO05D006725 5.2e-25 120.6 125 55.2
MBI13_g29624_MAGBIO Magnolia biondii HOM05D005191 ORTHO05D006725 3.7e-23 114.4 64 81.2
RcHm_v2.0_Chr5g0051701 Rosa chinensis HOM05D005191 ORTHO05D006725 1.1e-22 112.8 131 47.3
FAN10G2766 Fragaria x ananassa HOM05D005191 ORTHO05D006725 4.1e-22 110.9 82 68.3
FAN26G2291 Fragaria x ananassa HOM05D005191 ORTHO05D006725 3.2e-19 101.3 85 61.2
FAN15G1193 Fragaria x ananassa HOM05D002169 ORTHO05D006927 8.8e-17 93.2 91 52.7
Rhsim05G0138400 Rhododendron simsii HOM05D005191 ORTHO05D006725 1.7e-15 89.0 116 50.9
COL.COLO4_23752 Corchorus olitorius HOM05D005191 ORTHO05D016248 1.0e-12 79.7 60 68.3
COL.COLO4_21409 Corchorus olitorius HOM05D005191 ORTHO05D016248 2.9e-12 78.2 71 59.2
FvH4_1g29180 Fragaria vesca HOM05D005191 ORTHO05D025363 8.5e-12 76.6 51 68.6
Rhsim10G0150400 Rhododendron simsii HOM05D005191 ORTHO05D030537 2.1e-10 72.0 52 71.2
GSVIVG01012804001 Vitis vinifera HOM05D005191 ORTHO05D006725 6.8e-09 67.0 42 71.4
Sp3g26280 Schrenkiella parvula HOM05D005191 ORTHO05D012938 4.4e-08 64.3 72 47.2
Thhalv10022959m.g Eutrema salsugineum HOM05D005191 ORTHO05D006725 3.7e-07 61.2 91 38.5


User provided reference genes

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