Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy7G02401 Aquilegia oxysepala HOM05D003293 ORTHO05D013446 3.7e-45 184.5 92 100.0
Aqoxy2G00246 Aquilegia oxysepala HOM05D003293 ORTHO05D005060 1.7e-18 95.9 50 90.0
Actinidia12755 Actinidia chinensis HOM05D003293 ORTHO05D005060 2.9e-18 95.1 50 88.0
AUR62011946 Chenopodium quinoa HOM05D003293 ORTHO05D005060 1.1e-17 93.2 50 86.0
SalBow8G4723 Salvia bowleyana HOM05D003293 ORTHO05D005060 1.5e-17 92.8 50 86.0
Lsat_1_v5_gn_6_47480 Lactuca sativa HOM05D003293 ORTHO05D005060 1.9e-17 92.4 50 86.0
MBI02_g32629_MAGBIO Magnolia biondii HOM05D003293 ORTHO05D005060 1.9e-17 92.4 50 86.0
Ah.01g017820 Amaranthus hybridus HOM05D003293 ORTHO05D005060 3.2e-17 91.7 50 84.0
AT1G79470 Arabidopsis thaliana HOM05D003293 ORTHO05D005060 3.2e-17 91.7 50 86.0
Carub.0002s2633 Capsella rubella HOM05D003293 ORTHO05D005060 3.2e-17 91.7 50 86.0
AUR62032176 Chenopodium quinoa HOM05D003293 ORTHO05D005060 4.2e-17 91.3 50 84.0
COL.COLO4_15126 Corchorus olitorius HOM05D003293 ORTHO05D005060 4.2e-17 91.3 50 84.0
Hund00106 Selenicereus undatus HOM05D003293 ORTHO05D005060 4.2e-17 91.3 50 84.0
vmacro05416 Vaccinium macrocarpon HOM05D003293 ORTHO05D005060 4.2e-17 91.3 50 86.0
BcaC08g47510 Brassica carinata HOM05D003293 ORTHO05D005060 5.5e-17 90.9 50 84.0
A07p44530 Brassica napus HOM05D003293 ORTHO05D005060 5.5e-17 90.9 50 84.0
C06p53360 Brassica napus HOM05D003293 ORTHO05D005060 5.5e-17 90.9 50 84.0
BolC6t40353H Brassica oleracea HOM05D003293 ORTHO05D005060 5.5e-17 90.9 50 84.0
BraA07t31963Z Brassica rapa HOM05D003293 ORTHO05D005060 5.5e-17 90.9 50 84.0
Thhalv10018438m.g Eutrema salsugineum HOM05D003293 ORTHO05D005060 5.5e-17 90.9 50 84.0
Atru.chr1.64 Acer truncatum HOM05D003293 ORTHO05D005060 7.2e-17 90.5 50 84.0
Cpa.g.c31787.1 Carica papaya HOM05D003293 ORTHO05D005060 7.2e-17 90.5 50 84.0
CSS0006105 Camellia sinensis var. sinensis HOM05D003293 ORTHO05D005060 9.5e-17 90.1 50 84.0
CSS0010168 Camellia sinensis var. sinensis HOM05D003293 ORTHO05D005060 9.5e-17 90.1 50 84.0
CSS0025898 Camellia sinensis var. sinensis HOM05D003293 ORTHO05D005060 9.5e-17 90.1 50 84.0
CSS0030196 Camellia sinensis var. sinensis HOM05D003293 ORTHO05D005060 9.5e-17 90.1 50 84.0
Nn2g15373 Nelumbo nucifera HOM05D003293 ORTHO05D005060 9.5e-17 90.1 50 84.0
SGA_v2.0_scaffold239G44013 Striga asiatica HOM05D003293 ORTHO05D005060 9.5e-17 90.1 50 84.0
AL2G40080 Arabidopsis lyrata HOM05D003293 ORTHO05D005060 1.2e-16 89.7 50 84.0
BcaC08g47508 Brassica carinata HOM05D003293 ORTHO05D005060 1.2e-16 89.7 50 82.0
CARHR073130 Cardamine hirsuta HOM05D003293 ORTHO05D005060 1.2e-16 89.7 50 84.0
Eucgr.E02909 Eucalyptus grandis HOM05D003293 ORTHO05D005060 1.2e-16 89.7 50 84.0
Eucgr.I02089 Eucalyptus grandis HOM05D003293 ORTHO05D005060 1.2e-16 89.7 50 84.0
Eucgr.L02511 Eucalyptus grandis HOM05D003293 ORTHO05D005060 1.2e-16 89.7 50 84.0
Lj3g0010257 Lotus japonicus HOM05D003293 ORTHO05D005060 1.2e-16 89.7 50 84.0
Medtr7g085560 Medicago truncatula HOM05D003293 ORTHO05D005060 1.2e-16 89.7 50 84.0
Psat3g088880 Pisum sativum HOM05D003293 ORTHO05D005060 1.2e-16 89.7 50 84.0
SalBow8G3872 Salvia bowleyana HOM05D003293 ORTHO05D005060 1.2e-16 89.7 50 84.0
Thecc.09G018800 Theobroma cacao HOM05D003293 ORTHO05D005060 1.2e-16 89.7 50 82.0
TAR627G0458 Trochodendron aralioides HOM05D003293 ORTHO05D005060 1.2e-16 89.7 50 82.0
Aa31LG7G870 Aethionema arabicum HOM05D003293 ORTHO05D005060 1.6e-16 89.4 50 82.0
arahy.Tifrunner.gnm1.ann1.12ZBK0 Arachis hypogaea HOM05D003293 ORTHO05D005060 1.6e-16 89.4 50 82.0
arahy.Tifrunner.gnm1.ann1.GYGU5R Arachis hypogaea HOM05D003293 ORTHO05D005060 1.6e-16 89.4 50 82.0
arahy.Tifrunner.gnm1.ann1.WB9EUJ Arachis hypogaea HOM05D003293 ORTHO05D005060 1.6e-16 89.4 50 82.0
arahy.Tifrunner.gnm1.ann1.Z9YTJW Arachis hypogaea HOM05D003293 ORTHO05D005060 1.6e-16 89.4 50 82.0
EL10Ac2g03658 Beta vulgaris HOM05D003293 ORTHO05D005060 1.6e-16 89.4 50 82.0
AUR62005030 Chenopodium quinoa HOM05D003293 ORTHO05D005060 1.6e-16 89.4 50 80.0
Ca_08263_v3 Cicer arietinum L. HOM05D003293 ORTHO05D005060 1.6e-16 89.4 50 84.0
Cc04_g12410 Coffea canephora HOM05D003293 ORTHO05D005060 1.6e-16 89.4 50 82.0
Dinv42465 Davidia involucrata HOM05D003293 ORTHO05D005060 1.6e-16 89.4 50 84.0
Hma1.2p1_0210F.1_g089470 Hydrangea macrophylla HOM05D003293 ORTHO05D005060 1.6e-16 89.4 50 84.0
Hma1.2p1_2875F.1_g329750 Hydrangea macrophylla HOM05D003293 ORTHO05D005060 1.6e-16 89.4 50 84.0
Sc08g0001770 Simmondsia chinensis HOM05D003293 ORTHO05D005060 1.6e-16 89.4 50 82.0
arahy.Tifrunner.gnm1.ann1.K3F60Q Arachis hypogaea HOM05D003293 ORTHO05D005060 2.1e-16 89.0 59 72.9
Ciclev10004800m.g Citrus clementina HOM05D003293 ORTHO05D005060 2.1e-16 89.0 50 82.0
Lalb_Chr01g0015541 Lupinus albus HOM05D003293 ORTHO05D005060 2.1e-16 89.0 50 82.0
TAR629G2219 Trochodendron aralioides HOM05D003293 ORTHO05D005060 2.8e-16 88.6 50 80.0
Carub.0001s1609 Capsella rubella HOM05D003293 ORTHO05D005060 3.6e-16 88.2 50 82.0
Glyma.08G164100 Glycine max HOM05D003293 ORTHO05D005060 3.6e-16 88.2 50 80.0
Glyma.15G263100 Glycine max HOM05D003293 ORTHO05D005060 3.6e-16 88.2 50 80.0
Lalb_Chr25g0284391 Lupinus albus HOM05D003293 ORTHO05D005060 3.6e-16 88.2 50 82.0
THA.LOC104812383 Tarenaya hassleriana HOM05D003293 ORTHO05D005060 3.6e-16 88.2 50 84.0
AL1G28470 Arabidopsis lyrata HOM05D003293 ORTHO05D005060 4.7e-16 87.8 50 80.0
AT1G16350 Arabidopsis thaliana HOM05D003293 ORTHO05D005060 4.7e-16 87.8 50 80.0
Oeu033076.1 Olea europaea HOM05D003293 ORTHO05D005060 4.7e-16 87.8 50 80.0
TPR.G5871 Trifolium pratense HOM05D003293 ORTHO05D005060 4.7e-16 87.8 50 82.0
ClCG09G022840 Citrullus lanatus HOM05D003293 ORTHO05D005060 6.1e-16 87.4 50 82.0
MELO3C012593.2 Cucumis melo HOM05D003293 ORTHO05D005060 6.1e-16 87.4 50 82.0
CsaV3_7G023050 Cucumis sativus L. HOM05D003293 ORTHO05D005060 6.1e-16 87.4 50 82.0
Thhalv10007432m.g Eutrema salsugineum HOM05D003293 ORTHO05D005060 6.1e-16 87.4 50 82.0
Phvul.005G048700 Phaseolus vulgaris HOM05D003293 ORTHO05D005060 6.1e-16 87.4 50 80.0
Prupe.4G129200 Prunus persica HOM05D003293 ORTHO05D005060 6.1e-16 87.4 50 82.0
VMungo1080G1291 Vigna mungo HOM05D003293 ORTHO05D005060 6.1e-16 87.4 50 80.0
Rhsim10G0161300 Rhododendron simsii HOM05D003293 ORTHO05D005060 8.0e-16 87.0 50 84.0
Sed0007161 Sechium edule HOM05D003293 ORTHO05D005060 8.0e-16 87.0 50 82.0
unitig_748.g7610 Utricularia gibba HOM05D003293 ORTHO05D005060 8.0e-16 87.0 50 82.0
Migut.M01507 Erythranthe guttata HOM05D003293 ORTHO05D005060 1.0e-15 86.7 50 80.0
Sp1g14530 Schrenkiella parvula HOM05D003293 ORTHO05D005060 1.0e-15 86.7 50 80.0
Haze_07768 Corylus avellana HOM05D003293 ORTHO05D005060 1.4e-15 86.3 50 78.0
Duzib268G1306 Durio zibethinus HOM05D003293 ORTHO05D005060 1.4e-15 86.3 50 80.0
Gohir.A13G206500 Gossypium hirsutum HOM05D003293 ORTHO05D005060 1.4e-15 86.3 50 80.0
Gohir.D13G211100 Gossypium hirsutum HOM05D003293 ORTHO05D005060 1.4e-15 86.3 50 80.0
Gorai.013G241200 Gossypium raimondii HOM05D003293 ORTHO05D005060 1.4e-15 86.3 50 80.0
Rhsim03G0000200 Rhododendron simsii HOM05D003293 ORTHO05D005060 1.4e-15 86.3 50 82.0
Aa31LG4G1560 Aethionema arabicum HOM05D003293 ORTHO05D005060 1.8e-15 85.9 50 82.0
CAN.G641.45 Capsicum annuum HOM05D003293 ORTHO05D005060 1.8e-15 85.9 50 80.0
Cfa019380 Carpinus fangiana HOM05D003293 ORTHO05D005060 1.8e-15 85.9 50 78.0
HanXRQChr14g0433351 Helianthus annuus HOM05D003293 ORTHO05D005060 1.8e-15 85.9 50 78.0
RcHm_v2.0_Chr3g0493461 Rosa chinensis HOM05D003293 ORTHO05D013446 1.8e-15 85.9 50 78.0
RcHm_v2.0_Chr4g0402021 Rosa chinensis HOM05D003293 ORTHO05D013446 1.8e-15 85.9 50 78.0
RcHm_v2.0_Chr7g0238791 Rosa chinensis HOM05D003293 ORTHO05D013446 1.8e-15 85.9 50 78.0
TWI38G1632 Tripterygium wilfordii HOM05D003293 ORTHO05D005060 1.8e-15 85.9 50 80.0
TWI59G0396 Tripterygium wilfordii HOM05D003293 ORTHO05D005060 1.8e-15 85.9 50 80.0
BcaB02g06613 Brassica carinata HOM05D003293 ORTHO05D005060 2.3e-15 85.5 50 78.0
BcaC05g25581 Brassica carinata HOM05D003293 ORTHO05D005060 2.3e-15 85.5 50 78.0
A06p12260 Brassica napus HOM05D003293 ORTHO05D005060 2.3e-15 85.5 50 78.0
C05p14510 Brassica napus HOM05D003293 ORTHO05D005060 2.3e-15 85.5 50 78.0
BolC5t30176H Brassica oleracea HOM05D003293 ORTHO05D005060 2.3e-15 85.5 50 78.0
COL.COLO4_18926 Corchorus olitorius HOM05D003293 ORTHO05D005060 2.3e-15 85.5 50 80.0
HanXRQChr13g0420911 Helianthus annuus HOM05D003293 ORTHO05D005060 2.3e-15 85.5 50 78.0
Oeu019711.2 Olea europaea HOM05D003293 ORTHO05D005060 2.3e-15 85.5 50 78.0
QL04p093622 Quercus lobata HOM05D003293 ORTHO05D005060 2.3e-15 85.5 50 80.0
Sabra08G0061300 Salix brachista HOM05D003293 ORTHO05D005060 2.3e-15 85.5 50 80.0
CARHR016820 Cardamine hirsuta HOM05D003293 ORTHO05D005060 3.0e-15 85.1 50 78.0
Lj3C543G2 Lonicera japonica HOM05D003293 ORTHO05D005060 3.0e-15 85.1 50 80.0
MD05G1237000 Malus domestica HOM05D003293 ORTHO05D005060 3.0e-15 85.1 50 80.0
MD05G1237500 Malus domestica HOM05D003293 ORTHO05D005060 3.0e-15 85.1 50 80.0
Potri.008G082800 Populus trichocarpa HOM05D003293 ORTHO05D005060 3.0e-15 85.1 50 80.0
Potri.010G173600 Populus trichocarpa HOM05D003293 ORTHO05D005060 3.0e-15 85.1 50 80.0
Sabra10G0133500 Salix brachista HOM05D003293 ORTHO05D005060 3.0e-15 85.1 50 80.0
FvH4_3g14430 Fragaria vesca HOM05D003293 ORTHO05D005060 4.0e-15 84.7 50 78.0
FAN11G0148 Fragaria x ananassa HOM05D003293 ORTHO05D005060 4.0e-15 84.7 50 78.0
FAN21G2700 Fragaria x ananassa HOM05D003293 ORTHO05D005060 4.0e-15 84.7 50 78.0
FAN25G2457 Fragaria x ananassa HOM05D003293 ORTHO05D005060 4.0e-15 84.7 50 78.0
PSO017G3619 Papaver somniferum HOM05D003293 ORTHO05D005060 4.0e-15 84.7 50 80.0
PSO063G6375 Papaver somniferum HOM05D003293 ORTHO05D005060 4.0e-15 84.7 50 80.0
Pp3c1_34070 Physcomitrium patens HOM05D003293 ORTHO05D005060 4.0e-15 84.7 50 76.0
Pp3c1_34170 Physcomitrium patens HOM05D003293 ORTHO05D005060 4.0e-15 84.7 50 76.0
ECA240G2653 Erigeron canadensis HOM05D003293 ORTHO05D005060 6.8e-15 84.0 50 76.0
Nitab4.5_0000515g0130 Nicotiana tabacum HOM05D003293 ORTHO05D005060 6.8e-15 84.0 50 78.0
Nitab4.5_0005442g0040 Nicotiana tabacum HOM05D003293 ORTHO05D005060 6.8e-15 84.0 50 78.0
Sopen10g030150 Solanum pennellii HOM05D003293 ORTHO05D005060 6.8e-15 84.0 50 80.0
PGSC0003DMG400008158 Solanum tuberosum HOM05D003293 ORTHO05D005060 6.8e-15 84.0 50 80.0
arahy.Tifrunner.gnm1.ann1.59CN8W Arachis hypogaea HOM05D003293 ORTHO05D005060 8.8e-15 83.6 50 78.0
DCAR_016845 Daucus carota HOM05D003293 ORTHO05D005060 8.8e-15 83.6 50 78.0
Pp3c14_26610 Physcomitrium patens HOM05D003293 ORTHO05D005060 8.8e-15 83.6 50 76.0
PGR142G2665 Punica granatum HOM05D003293 ORTHO05D005060 8.8e-15 83.6 50 76.0
Solyc10g079500.2 Solanum lycopersicum HOM05D003293 ORTHO05D005060 8.8e-15 83.6 50 80.0
Lsat_1_v5_gn_3_115940 Lactuca sativa HOM05D003293 ORTHO05D005060 1.2e-14 83.2 50 78.0
MD10G1213800 Malus domestica HOM05D003293 ORTHO05D005060 1.2e-14 83.2 50 78.0
Manes.03G079800 Manihot esculenta HOM05D003293 ORTHO05D005060 1.2e-14 83.2 50 76.0
RcHm_v2.0_Chr5g0023561 Rosa chinensis HOM05D003293 ORTHO05D005060 1.2e-14 83.2 50 76.0
CDE09G0953 Ceratophyllum demersum HOM05D003293 ORTHO05D005060 1.5e-14 82.8 50 76.0
RcHm_v2.0_Chr1g0350061 Rosa chinensis HOM05D003293 ORTHO05D013446 1.5e-14 82.8 50 76.0
RcHm_v2.0_Chr2g0101951 Rosa chinensis HOM05D003293 ORTHO05D013446 1.5e-14 82.8 50 76.0
RcHm_v2.0_Chr5g0023741 Rosa chinensis HOM05D003293 ORTHO05D005060 1.5e-14 82.8 50 76.0
RcHm_v2.0_Chr7g0234111 Rosa chinensis HOM05D003293 ORTHO05D013446 1.5e-14 82.8 50 76.0
RcHm_v2.0_Chr7g0239601 Rosa chinensis HOM05D003293 ORTHO05D013446 1.5e-14 82.8 50 76.0
ATR0665G286 Amborella trichopoda HOM05D003293 ORTHO05D005060 2.0e-14 82.4 50 76.0
BraA06t24394Z Brassica rapa HOM05D003293 ORTHO05D005060 2.0e-14 82.4 50 76.0
FAN16G3527 Fragaria x ananassa HOM05D003293 ORTHO05D005060 2.6e-14 82.0 50 76.0
CiPaw.11G057700 Carya illinoinensis HOM05D003293 ORTHO05D005060 3.4e-14 81.6 50 76.0
Lalb_Chr20g0108441 Lupinus albus HOM05D003293 ORTHO05D005060 3.4e-14 81.6 50 76.0
SEGI_05687 Sequoiadendron giganteum HOM05D003293 ORTHO05D005060 3.4e-14 81.6 50 76.0
AagrBONN_evm.TU.Sc2ySwM_362.951 Anthoceros agrestis HOM05D003293 ORTHO05D005060 4.4e-14 81.3 50 76.0
Zm00001eb057300 Zea mays HOM05D003293 ORTHO05D005060 7.5e-14 80.5 50 74.0
Zm00001eb059650 Zea mays HOM05D003293 ORTHO05D005060 7.5e-14 80.5 50 74.0
Peaxi162Scf00012g02522 Petunia axillaris HOM05D003293 ORTHO05D005060 9.8e-14 80.1 50 74.0
GSVIVG01036725001 Vitis vinifera HOM05D003293 ORTHO05D005060 1.3e-13 79.7 50 74.0
Mapoly0102s0045 Marchantia polymorpha HOM05D003293 ORTHO05D005060 1.7e-13 79.3 78 48.7
Nitab4.5_0003468g0030 Nicotiana tabacum HOM05D003293 ORTHO05D005060 2.8e-13 78.6 47 76.6
HPP92_020646 Vanilla planifolia HOM05D003293 ORTHO05D005060 2.8e-13 78.6 50 74.0
Os03g0780500 Oryza sativa ssp. japonica HOM05D003293 ORTHO05D005060 3.7e-13 78.2 50 70.0
Zm00001eb213620 Zea mays HOM05D003293 ORTHO05D005060 3.7e-13 78.2 50 74.0
ATR0810G033 Amborella trichopoda HOM05D003293 ORTHO05D005060 4.9e-13 77.8 50 74.0
CBR_g30467 Chara braunii HOM05D003293 ORTHO05D005060 4.9e-13 77.8 78 51.3
PRCOL_00001751 Prasinoderma coloniale HOM05D003293 ORTHO05D005060 6.3e-13 77.4 50 72.0
RcHm_v2.0_Chr2g0155871 Rosa chinensis HOM05D003293 ORTHO05D013446 8.3e-13 77.0 50 70.0
RcHm_v2.0_Chr3g0468611 Rosa chinensis HOM05D003293 ORTHO05D013446 8.3e-13 77.0 50 70.0
Cre14.g614300 Chlamydomonas reinhardtii HOM05D003293 ORTHO05D005060 1.4e-12 76.3 50 70.0
PSO675G5548 Papaver somniferum HOM05D003293 ORTHO05D005060 5.4e-12 74.3 50 72.0
RcHm_v2.0_Chr7g0231801 Rosa chinensis HOM05D003293 ORTHO05D013446 5.4e-12 74.3 50 68.0
RcHm_v2.0_Chr4g0401281 Rosa chinensis HOM05D003293 ORTHO05D013446 7.0e-12 73.9 50 68.0
MCO03G303 Micromonas commoda HOM05D003293 ORTHO05D005060 9.2e-12 73.6 50 68.0
SMO361G0668 Selaginella moellendorffii HOM05D003293 ORTHO05D005060 2.0e-11 72.4 50 66.0
Cfa025892 Carpinus fangiana HOM05D003293 ORTHO05D005060 2.7e-11 72.0 50 68.0
RcHm_v2.0_Chr2g0110561 Rosa chinensis HOM05D003293 ORTHO05D013446 1.3e-10 69.7 48 66.7
RcHm_v2.0_Chr5g0022661 Rosa chinensis HOM05D003293 ORTHO05D013446 1.3e-10 69.7 48 66.7
RcHm_v2.0_Chr6g0267731 Rosa chinensis HOM05D003293 ORTHO05D013446 1.3e-10 69.7 48 66.7
RcHm_v2.0_Chr4g0408151 Rosa chinensis HOM05D003293 ORTHO05D013446 6.6e-10 67.4 48 64.6
AUR62036933 Chenopodium quinoa HOM05D003293 ORTHO05D005060 3.3e-09 65.1 37 78.4
Haze_26254 Corylus avellana HOM05D003293 ORTHO05D005060 5.7e-06 54.3 37 70.3


User provided reference genes

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