Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy7G02400 Aquilegia oxysepala HOM05D006038 ORTHO05D007547 1.0e-204 716.5 353 100.0
TAR625G0922 Trochodendron aralioides HOM05D006038 ORTHO05D007547 1.3e-151 540.0 346 74.0
Dinv42816 Davidia involucrata HOM05D006038 ORTHO05D007547 3.7e-146 521.9 344 71.2
Dinv43284 Davidia involucrata HOM05D006038 ORTHO05D007547 3.7e-146 521.9 344 71.2
Nn8g40105 Nelumbo nucifera HOM05D006038 ORTHO05D007547 6.0e-144 514.6 346 69.7
CSS0049632 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 5.4e-137 491.5 348 68.1
CSS0006550 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 3.5e-136 488.8 346 68.2
CSS0019709 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 7.8e-136 487.6 348 67.0
PSO170G4900 Papaver somniferum HOM05D006038 ORTHO05D007547 1.0e-135 487.3 347 67.7
PSO017G0013 Papaver somniferum HOM05D006038 ORTHO05D007547 2.3e-135 486.1 347 67.7
CANSAT11G1787 Cannabis sativa HOM05D006038 ORTHO05D007547 8.6e-135 484.2 351 64.4
MD10G1281400 Malus domestica HOM05D006038 ORTHO05D007547 3.1e-132 475.7 352 65.6
GSVIVG01023690001 Vitis vinifera HOM05D006038 ORTHO05D007547 3.2e-129 465.7 345 66.1
CSS0009428 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 9.2e-129 464.2 336 67.0
QL02p094222 Quercus lobata HOM05D006038 ORTHO05D007547 1.6e-128 463.4 346 64.5
Lalb_Chr13g0300671 Lupinus albus HOM05D006038 ORTHO05D007547 4.3e-126 455.3 347 65.1
Prupe.1G102000 Prunus persica HOM05D006038 ORTHO05D007547 2.1e-125 453.0 347 62.5
DCAR_020091 Daucus carota HOM05D006038 ORTHO05D007547 2.8e-125 452.6 349 64.8
Glyma.02G206900 Glycine max HOM05D006038 ORTHO05D007547 1.4e-124 450.3 346 65.3
Lj4g0023904 Lotus japonicus HOM05D006038 ORTHO05D007547 2.4e-124 449.5 359 64.1
RcHm_v2.0_Chr4g0405491 Rosa chinensis HOM05D006038 ORTHO05D007547 3.1e-124 449.1 345 63.5
Psat4g010160 Pisum sativum HOM05D006038 ORTHO05D007547 4.0e-124 448.7 351 64.7
Ca_21155_v3 Cicer arietinum L. HOM05D006038 ORTHO05D007547 5.2e-124 448.4 349 65.0
TWI63G0196 Tripterygium wilfordii HOM05D006038 ORTHO05D007547 6.9e-124 448.0 357 58.8
Glyma.17G071100 Glycine max HOM05D006038 ORTHO05D007547 5.8e-123 444.9 349 64.8
FAN17G0258 Fragaria x ananassa HOM05D006038 ORTHO05D007547 7.6e-123 444.5 345 62.0
Thecc.09G154200 Theobroma cacao HOM05D006038 ORTHO05D007547 1.7e-122 443.4 357 60.5
FAN07G2585 Fragaria x ananassa HOM05D006038 ORTHO05D007547 6.4e-122 441.4 345 61.7
MBI15_g26068_MAGBIO Magnolia biondii HOM05D006038 ORTHO05D007547 1.1e-121 440.7 328 65.2
Hund08960 Selenicereus undatus HOM05D006038 ORTHO05D007547 1.1e-121 440.7 353 62.9
FvH4_4g09770 Fragaria vesca HOM05D006038 ORTHO05D007547 1.9e-121 439.9 345 61.7
CiPaw.15G164200 Carya illinoinensis HOM05D006038 ORTHO05D007547 2.4e-121 439.5 351 62.1
Cfa020781 Carpinus fangiana HOM05D006038 ORTHO05D007547 3.2e-121 439.1 349 61.9
CsaV3_2G007740 Cucumis sativus L. HOM05D006038 ORTHO05D007547 4.2e-121 438.7 344 61.0
FAN22G1283 Fragaria x ananassa HOM05D006038 ORTHO05D007547 4.2e-121 438.7 345 61.2
MELO3C004111.2 Cucumis melo HOM05D006038 ORTHO05D007547 5.4e-121 438.3 346 61.0
TPR.G22112 Trifolium pratense HOM05D006038 ORTHO05D007547 5.4e-121 438.3 351 63.0
CSS0029746 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 7.1e-121 438.0 348 62.6
Medtr4g130280 Medicago truncatula HOM05D006038 ORTHO05D007547 1.6e-120 436.8 358 62.6
Phvul.003G153400 Phaseolus vulgaris HOM05D006038 ORTHO05D007547 2.1e-120 436.4 350 63.1
PGSC0003DMG400011212 Solanum tuberosum HOM05D006038 ORTHO05D007547 2.7e-120 436.0 350 60.3
Sopen07g002150 Solanum pennellii HOM05D006038 ORTHO05D007547 3.0e-119 432.6 350 60.0
CDE04G0171 Ceratophyllum demersum HOM05D006038 ORTHO05D007547 5.1e-119 431.8 346 59.8
Haze_19138 Corylus avellana HOM05D006038 ORTHO05D007547 5.1e-119 431.8 375 58.4
Actinidia38659 Actinidia chinensis HOM05D006038 ORTHO05D007547 6.6e-119 431.4 354 58.2
VMungo1215G1375 Vigna mungo HOM05D006038 ORTHO05D007547 6.6e-119 431.4 350 62.3
Sed0013580 Sechium edule HOM05D006038 ORTHO05D007547 1.9e-118 429.9 346 60.1
Solyc07g006010.3 Solanum lycopersicum HOM05D006038 ORTHO05D007547 1.9e-118 429.9 350 59.7
Cc06_g14480 Coffea canephora HOM05D006038 ORTHO05D007547 4.3e-118 428.7 351 59.8
Lsat_1_v5_gn_8_64821 Lactuca sativa HOM05D006038 ORTHO05D007547 5.6e-118 428.3 333 62.5
Gohir.D05G008700 Gossypium hirsutum HOM05D006038 ORTHO05D007547 2.1e-117 426.4 351 59.5
Gorai.009G008900 Gossypium raimondii HOM05D006038 ORTHO05D007547 2.1e-117 426.4 351 59.5
EL10Ac8g18905 Beta vulgaris HOM05D006038 ORTHO05D007547 6.2e-117 424.9 356 61.2
Gohir.A05G007900 Gossypium hirsutum HOM05D006038 ORTHO05D007547 1.4e-116 423.7 351 59.0
Rhsim03G0259500 Rhododendron simsii HOM05D006038 ORTHO05D007547 2.4e-116 422.9 344 62.2
Manes.14G113700 Manihot esculenta HOM05D006038 ORTHO05D007547 4.0e-116 422.2 358 58.4
ECA236G4218 Erigeron canadensis HOM05D006038 ORTHO05D007547 5.3e-116 421.8 352 59.4
ClCG02G014260 Citrullus lanatus HOM05D006038 ORTHO05D007547 5.8e-115 418.3 363 56.7
Cpa.g.sc199.14 Carica papaya HOM05D006038 ORTHO05D007547 7.6e-115 417.9 361 59.3
Nitab4.5_0002809g0020 Nicotiana tabacum HOM05D006038 ORTHO05D007547 8.4e-114 414.5 366 56.6
CSS0047764 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 1.4e-113 413.7 345 60.3
Peaxi162Scf00563g00418 Petunia axillaris HOM05D006038 ORTHO05D007547 7.1e-113 411.4 347 57.3
PGR114G0005 Punica granatum HOM05D006038 ORTHO05D007547 1.8e-111 406.8 357 57.1
PGR142G2424 Punica granatum HOM05D006038 ORTHO05D007547 1.8e-111 406.8 357 57.1
HPP92_020613 Vanilla planifolia HOM05D006038 ORTHO05D007547 2.3e-111 406.4 356 55.6
SGA_v2.0_scaffold265G46074 Striga asiatica HOM05D006038 ORTHO05D007547 1.9e-110 403.3 370 55.1
Migut.J01393 Erythranthe guttata HOM05D006038 ORTHO05D007547 4.3e-110 402.1 350 56.9
MSTRG.6162 Avicennia marina HOM05D006038 ORTHO05D007547 5.6e-110 401.7 346 57.2
CAN.G1190.21 Capsicum annuum HOM05D006038 ORTHO05D007547 9.6e-110 401.0 350 56.6
Ciclev10008825m.g Citrus clementina HOM05D006038 ORTHO05D007547 1.4e-108 397.1 348 58.3
Sabra06G0137300 Salix brachista HOM05D006038 ORTHO05D007547 2.4e-108 396.4 365 55.6
THA.LOC104803556 Tarenaya hassleriana HOM05D006038 ORTHO05D007547 9.0e-108 394.4 360 54.4
ATR0580G061 Amborella trichopoda HOM05D006038 ORTHO05D007547 1.5e-107 393.7 348 55.5
BcaNung02736 Brassica carinata HOM05D006038 ORTHO05D007547 1.5e-107 393.7 357 56.9
Sp7g28720 Schrenkiella parvula HOM05D006038 ORTHO05D007547 2.6e-107 392.9 362 55.2
Atru.chr7.352 Acer truncatum HOM05D006038 ORTHO05D007547 9.9e-107 391.0 356 55.9
AL7G21280 Arabidopsis lyrata HOM05D006038 ORTHO05D007547 1.3e-106 390.6 357 56.0
AT4G30840 Arabidopsis thaliana HOM05D006038 ORTHO05D007547 1.7e-106 390.2 357 56.0
BraA03t15077Z Brassica rapa HOM05D006038 ORTHO05D007547 1.7e-106 390.2 357 55.7
CARHR238700 Cardamine hirsuta HOM05D006038 ORTHO05D007547 4.9e-106 388.7 364 54.9
Carub.0007s0972 Capsella rubella HOM05D006038 ORTHO05D007547 4.2e-105 385.6 364 53.8
Ah.14g084370 Amaranthus hybridus HOM05D001135 ORTHO05D001005 1.6e-104 383.6 336 58.9
Potri.006G180300 Populus trichocarpa HOM05D006038 ORTHO05D007547 2.7e-104 382.9 359 55.4
Aa31LG2G19530 Aethionema arabicum HOM05D006038 ORTHO05D007547 6.7e-103 378.3 356 55.9
Nitab4.5_0001036g0170 Nicotiana tabacum HOM05D006038 ORTHO05D007547 5.6e-102 375.2 353 54.4
HanXRQChr06g0179781 Helianthus annuus HOM05D006038 ORTHO05D007547 9.6e-102 374.4 348 53.2
Sc14g0000990 Simmondsia chinensis HOM05D006038 ORTHO05D007547 3.7e-101 372.5 364 54.7
A03p60370 Brassica napus HOM05D006038 ORTHO05D007547 2.9e-98 362.8 340 55.0
C07p58240 Brassica napus HOM05D006038 ORTHO05D007547 2.9e-98 362.8 340 55.3
BolC7t46282H Brassica oleracea HOM05D006038 ORTHO05D007547 3.8e-98 362.5 340 55.3
vmacro06051 Vaccinium macrocarpon HOM05D006038 ORTHO05D007547 1.9e-97 360.1 361 54.3
BcaNung01557 Brassica carinata HOM05D006038 ORTHO05D007547 2.3e-95 353.2 332 54.8
AUR62028377 Chenopodium quinoa HOM05D006038 ORTHO05D007547 6.9e-92 341.7 250 65.6
Eucgr.K03188 Eucalyptus grandis HOM05D006038 ORTHO05D007547 1.1e-89 334.3 333 51.7
AUR62025374 Chenopodium quinoa HOM05D006038 ORTHO05D007547 3.6e-88 329.3 239 66.5
Os08g0266600 Oryza sativa ssp. japonica HOM05D006038 ORTHO05D007547 2.0e-83 313.5 345 48.4
Zm00001eb177980 Zea mays HOM05D006038 ORTHO05D007547 2.0e-83 313.5 347 49.0
Dinv41342 Davidia involucrata HOM05D006038 ORTHO05D007547 2.9e-82 309.7 224 66.5
Thhalv10025548m.g Eutrema salsugineum HOM05D006038 ORTHO05D007547 1.3e-74 284.3 284 51.8
arahy.Tifrunner.gnm1.ann1.3R6I6F Arachis hypogaea HOM05D006038 ORTHO05D007547 4.7e-72 275.8 225 62.2
SMO367G0193 Selaginella moellendorffii HOM05D006038 ORTHO05D007547 4.4e-70 269.2 354 41.0
CSS0027410 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 1.6e-67 260.8 205 63.4
AagrBONN_evm.TU.Sc2ySwM_117.2538 Anthoceros agrestis HOM05D006038 ORTHO05D007547 1.5e-65 254.2 371 37.7
CSS0013086 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 9.4e-65 251.5 201 62.7
CSS0009266 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 4.7e-64 249.2 205 61.5
Oeu027617.1 Olea europaea HOM05D006038 ORTHO05D007547 5.2e-63 245.7 163 66.3
COL.COLO4_05400 Corchorus olitorius HOM05D006038 ORTHO05D007547 1.7e-58 230.7 205 54.6
Cfa020780 Carpinus fangiana HOM05D006038 ORTHO05D007547 2.9e-58 229.9 206 56.8
SHI18668 Sapria himalayana HOM05D006038 ORTHO05D007547 5.0e-58 229.2 303 43.6
Lj7A464T42 Lonicera japonica HOM05D006038 ORTHO05D007547 3.0e-55 219.9 201 56.7
Lj7A464G38 Lonicera japonica HOM05D006038 ORTHO05D007547 1.0e-47 194.9 144 66.0
A01p07320 Brassica napus HOM05D006038 ORTHO05D007547 3.4e-46 189.9 235 44.3
CBR_g22430 Chara braunii HOM05D006038 ORTHO05D007547 4.9e-45 186.0 395 31.1
SEGI_08614 Sequoiadendron giganteum HOM05D006038 ORTHO05D007547 4.5e-43 179.5 146 56.2
CSS0022095 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 1.3e-42 177.9 120 70.0
CSS0024276 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 3.0e-39 166.8 140 60.7
Pp3c6_28770 Physcomitrium patens HOM05D006038 ORTHO05D007547 1.9e-33 147.5 166 42.8
CSS0047172 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 5.4e-20 102.8 63 73.0
CSS0031036 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 6.6e-18 95.9 63 66.7
CSS0034156 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 7.6e-14 82.4 63 60.3
Cre02.g090600 Chlamydomonas reinhardtii HOM05D006038 ORTHO05D007547 3.8e-13 80.1 157 34.4
BcaNung03435 Brassica carinata HOM05D001147 ORTHO05D000823 5.4e-12 76.3 124 40.3
Zm00001eb124580 Zea mays HOM05D006038 ORTHO05D007547 1.0e-10 72.0 52 59.6
Zm00001eb038770 Zea mays HOM05D006038 ORTHO05D007547 4.3e-09 66.6 53 54.7
Zm00001eb046820 Zea mays HOM05D006038 ORTHO05D007547 4.3e-09 66.6 53 54.7
Zm00001eb051760 Zea mays HOM05D006038 ORTHO05D007547 4.3e-09 66.6 53 54.7
Zm00001eb253640 Zea mays HOM05D006038 ORTHO05D007547 5.6e-09 66.2 50 58.0
Zm00001eb369920 Zea mays HOM05D006038 ORTHO05D007547 7.3e-09 65.9 55 50.9
QL93p0107_0059 Quercus lobata HOM05D006038 ORTHO05D007547 4.4e-06 56.6 54 48.1


User provided reference genes

Program Settings