Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy7G02343 Aquilegia oxysepala HOM05D004748 ORTHO05D005825 7.2e-270 933.3 471 100.0
TAR625G1093 Trochodendron aralioides HOM05D004748 ORTHO05D005825 2.1e-181 639.4 403 80.4
COL.COLO4_31191 Corchorus olitorius HOM05D004748 ORTHO05D005825 8.1e-181 637.5 395 81.5
Prupe.3G019200 Prunus persica HOM05D004748 ORTHO05D005825 2.4e-180 636.0 400 80.0
QL05p082110 Quercus lobata HOM05D004748 ORTHO05D005825 6.9e-180 634.4 363 86.2
Thecc.06G061000 Theobroma cacao HOM05D004748 ORTHO05D005825 1.5e-179 633.3 402 79.9
MD17G1146400 Malus domestica HOM05D004748 ORTHO05D005825 9.9e-179 630.6 360 86.1
Potri.010G251300 Populus trichocarpa HOM05D004748 ORTHO05D005825 9.9e-179 630.6 365 85.5
Manes.03G081362 Manihot esculenta HOM05D004748 ORTHO05D005825 3.8e-178 628.6 365 85.2
Gorai.010G141000 Gossypium raimondii HOM05D004748 ORTHO05D005825 6.4e-178 627.9 371 84.1
MD09G1160600 Malus domestica HOM05D004748 ORTHO05D005825 6.4e-178 627.9 400 79.8
AUR62025643 Chenopodium quinoa HOM05D004748 ORTHO05D005825 8.4e-178 627.5 407 77.1
Gohir.A06G115900 Gossypium hirsutum HOM05D004748 ORTHO05D005825 1.4e-177 626.7 371 84.1
Gohir.D06G120700 Gossypium hirsutum HOM05D004748 ORTHO05D005825 1.4e-177 626.7 371 83.8
TWI12G1435 Tripterygium wilfordii HOM05D004748 ORTHO05D005825 1.4e-177 626.7 379 82.8
Cfa002138 Carpinus fangiana HOM05D004748 ORTHO05D005825 2.4e-177 625.9 364 85.4
MBI14_g10723_MAGBIO Magnolia biondii HOM05D004748 ORTHO05D005825 4.2e-177 625.2 369 85.1
GSVIVG01029626001 Vitis vinifera HOM05D004748 ORTHO05D005825 9.3e-177 624.0 367 85.0
AUR62001358 Chenopodium quinoa HOM05D004748 ORTHO05D005825 1.2e-176 623.6 407 76.7
CiPaw.01G089000 Carya illinoinensis HOM05D004748 ORTHO05D005825 6.0e-176 621.3 452 73.5
RcHm_v2.0_Chr2g0149771 Rosa chinensis HOM05D004748 ORTHO05D005825 7.9e-176 620.9 399 79.2
CANSAT01G3164 Cannabis sativa HOM05D004748 ORTHO05D005825 2.3e-175 619.4 363 84.0
Sabra10G0195200 Salix brachista HOM05D004748 ORTHO05D005825 3.9e-175 618.6 365 84.1
PSO017G2012 Papaver somniferum HOM05D004748 ORTHO05D005825 5.1e-175 618.2 364 83.5
PGR102G1746 Punica granatum HOM05D004748 ORTHO05D005825 8.7e-175 617.5 404 78.7
Actinidia31132 Actinidia chinensis HOM05D004748 ORTHO05D005825 1.5e-174 616.7 367 83.9
CSS0006652 Camellia sinensis var. sinensis HOM05D004748 ORTHO05D005825 1.9e-174 616.3 356 84.8
CsaV3_7G033760 Cucumis sativus L. HOM05D004748 ORTHO05D005825 2.5e-174 615.9 364 83.2
HanXRQChr10g0311461 Helianthus annuus HOM05D004748 ORTHO05D005825 9.6e-174 614.0 364 82.7
Eucgr.F04020 Eucalyptus grandis HOM05D004748 ORTHO05D005825 2.8e-173 612.5 404 77.7
Lj3g0017034 Lotus japonicus HOM05D004748 ORTHO05D005825 2.8e-173 612.5 358 84.1
Peaxi162Scf00207g01631 Petunia axillaris HOM05D004748 ORTHO05D005825 2.8e-173 612.5 361 82.8
DCAR_022622 Daucus carota HOM05D004748 ORTHO05D005825 4.8e-173 611.7 362 82.9
PSO170G5564 Papaver somniferum HOM05D004748 ORTHO05D005825 6.2e-173 611.3 395 78.5
Migut.I01182 Erythranthe guttata HOM05D004748 ORTHO05D005825 8.2e-173 610.9 478 69.2
Nn8g40686 Nelumbo nucifera HOM05D004748 ORTHO05D005825 1.4e-172 610.1 338 89.3
Sed0019048 Sechium edule HOM05D004748 ORTHO05D005825 1.4e-172 610.1 410 76.1
Duzib192G0179 Durio zibethinus HOM05D004748 ORTHO05D005825 2.4e-172 609.4 367 83.7
FvH4_6g37160 Fragaria vesca HOM05D004748 ORTHO05D005825 2.4e-172 609.4 384 79.9
FAN14G2305 Fragaria x ananassa HOM05D004748 ORTHO05D005825 2.4e-172 609.4 384 79.9
THA.LOC104816897 Tarenaya hassleriana HOM05D004748 ORTHO05D005825 2.4e-172 609.4 361 83.4
Glyma.08G222000 Glycine max HOM05D004748 ORTHO05D005825 3.1e-172 609.0 373 81.8
Ca_20497_v3 Cicer arietinum L. HOM05D004748 ORTHO05D005825 4.0e-172 608.6 366 82.2
ATR0580G210 Amborella trichopoda HOM05D004748 ORTHO05D005825 1.2e-171 607.1 338 89.3
FAN09G1322 Fragaria x ananassa HOM05D004748 ORTHO05D005825 1.5e-171 606.7 384 79.4
FAN05G0392 Fragaria x ananassa HOM05D004748 ORTHO05D005825 2.0e-171 606.3 402 77.4
FAN05G2438 Fragaria x ananassa HOM05D004748 ORTHO05D005825 2.0e-171 606.3 402 77.4
Sp1g38250 Schrenkiella parvula HOM05D004748 ORTHO05D005825 2.0e-171 606.3 400 78.0
Lalb_Chr04g0264641 Lupinus albus HOM05D004748 ORTHO05D005825 3.4e-171 605.5 385 80.3
Hma1.2p1_0517F.1_g170670 Hydrangea macrophylla HOM05D004748 ORTHO05D005825 4.5e-171 605.1 338 88.5
Medtr4g008150 Medicago truncatula HOM05D004748 ORTHO05D005825 4.5e-171 605.1 365 83.3
TPR.G15725 Trifolium pratense HOM05D004748 ORTHO05D005825 4.5e-171 605.1 363 81.8
VMungo0647G1450 Vigna mungo HOM05D004748 ORTHO05D005825 4.5e-171 605.1 363 81.8
Os04g0298200 Oryza sativa ssp. japonica HOM05D004748 ORTHO05D005825 5.8e-171 604.7 360 83.6
Cc04_g00320 Coffea canephora HOM05D004748 ORTHO05D005825 1.0e-170 604.0 398 77.1
Solyc06g063250.3 Solanum lycopersicum HOM05D004748 ORTHO05D005825 1.0e-170 604.0 436 72.2
AL1G59520 Arabidopsis lyrata HOM05D004748 ORTHO05D005825 1.3e-170 603.6 411 75.7
Phvul.008G254900 Phaseolus vulgaris HOM05D004748 ORTHO05D005825 1.7e-170 603.2 358 82.7
Zm00001eb086340 Zea mays HOM05D004748 ORTHO05D005825 1.7e-170 603.2 360 83.3
BcaC08g43322 Brassica carinata HOM05D004748 ORTHO05D005825 2.9e-170 602.4 401 76.8
BolC6t35782H Brassica oleracea HOM05D004748 ORTHO05D005825 2.9e-170 602.4 401 76.8
CARHR041760 Cardamine hirsuta HOM05D004748 ORTHO05D005825 2.9e-170 602.4 433 72.3
BcaB07g33612 Brassica carinata HOM05D004748 ORTHO05D005825 4.9e-170 601.7 358 83.2
Sopen06g022700 Solanum pennellii HOM05D004748 ORTHO05D005825 4.9e-170 601.7 436 72.2
Rhsim12G0214600 Rhododendron simsii HOM05D004748 ORTHO05D005825 6.5e-170 601.3 340 87.6
Carub.0001s4046 Capsella rubella HOM05D004748 ORTHO05D005825 8.4e-170 600.9 423 73.3
A06p02380 Brassica napus HOM05D004748 ORTHO05D005825 1.4e-169 600.1 356 83.4
C06p06730 Brassica napus HOM05D004748 ORTHO05D005825 1.9e-169 599.7 361 82.3
EL10Ac7g18182 Beta vulgaris HOM05D004748 ORTHO05D005825 2.5e-169 599.4 395 75.9
BraA06t23445Z Brassica rapa HOM05D004748 ORTHO05D005825 2.5e-169 599.4 358 83.0
PGSC0003DMG400026506 Solanum tuberosum HOM05D004748 ORTHO05D005825 9.3e-169 597.4 436 71.8
CDE07G1729 Ceratophyllum demersum HOM05D004748 ORTHO05D005825 1.2e-168 597.0 378 79.1
AT1G51610 Arabidopsis thaliana HOM05D004748 ORTHO05D005825 2.1e-168 596.3 399 76.4
Aa31LG10G3160 Aethionema arabicum HOM05D004748 ORTHO05D005825 2.7e-168 595.9 420 74.5
CDE04G0266 Ceratophyllum demersum HOM05D004748 ORTHO05D005825 4.6e-168 595.1 358 81.0
MSTRG.10889 Avicennia marina HOM05D004748 ORTHO05D005825 1.3e-167 593.6 483 67.7
ECA234G0898 Erigeron canadensis HOM05D004748 ORTHO05D005825 5.1e-167 591.7 356 81.5
unitig_748.g7080 Utricularia gibba HOM05D006371 ORTHO05D005825 6.7e-167 591.3 349 82.8
Lsat_1_v5_gn_5_137380 Lactuca sativa HOM05D004748 ORTHO05D005825 8.7e-167 590.9 359 81.6
HPP92_026143 Vanilla planifolia HOM05D004748 ORTHO05D005825 1.1e-166 590.5 352 83.0
BolC6t36471H Brassica oleracea HOM05D004748 ORTHO05D005825 5.7e-166 588.2 406 74.6
BcaC08g43922 Brassica carinata HOM05D004748 ORTHO05D005825 1.3e-165 587.0 406 74.4
BraA05t20854Z Brassica rapa HOM05D004748 ORTHO05D005825 2.8e-165 585.9 397 75.3
MELO3C024289.2 Cucumis melo HOM05D004748 ORTHO05D005825 2.8e-165 585.9 335 86.6
Ah.15g094390 Amaranthus hybridus HOM05D004748 ORTHO05D005825 8.2e-165 584.3 364 78.6
BcaB02g11258 Brassica carinata HOM05D004748 ORTHO05D005825 1.4e-164 583.6 376 77.7
A05p19500 Brassica napus HOM05D004748 ORTHO05D005825 2.5e-161 572.8 338 83.7
SHI31092 Sapria himalayana HOM05D004748 ORTHO05D005825 7.2e-161 571.2 337 83.7
Hund18602 Selenicereus undatus HOM05D004748 ORTHO05D005825 9.4e-161 570.9 520 59.6
arahy.Tifrunner.gnm1.ann1.660VQ8 Arachis hypogaea HOM05D004748 ORTHO05D005825 4.6e-160 568.5 370 77.6
Atru.chr1.2705 Acer truncatum HOM05D004748 ORTHO05D005825 2.5e-158 562.8 365 75.9
SGA_v2.0_scaffold71G24004 Striga asiatica HOM05D004748 ORTHO05D005825 4.3e-158 562.0 338 83.7
arahy.Tifrunner.gnm1.ann1.2A2X48 Arachis hypogaea HOM05D004748 ORTHO05D005825 1.2e-155 553.9 365 77.3
Ciclev10025586m.g Citrus clementina HOM05D004748 ORTHO05D005825 4.5e-155 552.0 370 77.0
Nitab4.5_0003757g0030 Nicotiana tabacum HOM05D004748 ORTHO05D005825 7.2e-153 544.7 393 72.3
CAN.G308.5 Capsicum annuum HOM05D004748 ORTHO05D005825 2.7e-152 542.7 308 87.0
Duzib235G0633 Durio zibethinus HOM05D004748 ORTHO05D005825 4.4e-150 535.4 371 73.0
Oeu001810.2 Olea europaea HOM05D004748 ORTHO05D005825 4.8e-149 531.9 293 88.7
Lj5A24T50 Lonicera japonica HOM05D004748 ORTHO05D005825 4.1e-148 528.9 327 81.7
ClCG09G001570 Citrullus lanatus HOM05D004748 ORTHO05D005825 2.0e-147 526.6 394 70.6
Nitab4.5_0001691g0140 Nicotiana tabacum HOM05D004748 ORTHO05D005825 3.4e-147 525.8 363 71.9
Lj9C541G21 Lonicera japonica HOM05D004748 ORTHO05D001811 2.2e-146 523.1 430 64.9
Mapoly0185s0006 Marchantia polymorpha HOM05D004748 ORTHO05D005825 1.6e-144 516.9 340 74.4
Psat7g261000 Pisum sativum HOM05D004748 ORTHO05D005825 2.1e-144 516.5 307 83.1
SMO228G0169 Selaginella moellendorffii HOM05D004748 ORTHO05D005825 2.3e-143 513.1 338 74.3
AagrBONN_evm.TU.Sc2ySwM_344.1578 Anthoceros agrestis HOM05D004748 ORTHO05D005825 1.5e-142 510.4 339 73.2
Peaxi162Scf00038g02524 Petunia axillaris HOM05D004748 ORTHO05D005825 3.7e-141 505.8 307 78.2
Hund05683 Selenicereus undatus HOM05D004748 ORTHO05D005825 4.8e-141 505.4 353 70.8
Hma1.2p1_0517F.1_g170660 Hydrangea macrophylla HOM05D004748 ORTHO05D005825 4.5e-139 498.8 328 79.6
Pp3c20_1650 Physcomitrium patens HOM05D004748 ORTHO05D005825 2.2e-133 479.9 395 62.3
Nitab4.5_0012506g0020 Nicotiana tabacum HOM05D004748 ORTHO05D005825 2.5e-129 466.5 335 69.3
Glyma.07G020100 Glycine max HOM05D004748 ORTHO05D005825 1.0e-127 461.1 287 80.1
Nitab4.5_0002661g0120 Nicotiana tabacum HOM05D004748 ORTHO05D005825 1.2e-126 457.6 456 58.8
Dinv20350 Davidia involucrata HOM05D004748 ORTHO05D005825 2.6e-126 456.4 384 67.4
Zm00001eb420390 Zea mays HOM05D004748 ORTHO05D005825 4.5e-123 445.7 269 82.9
Thhalv10011469m.g Eutrema salsugineum HOM05D004748 ORTHO05D005825 1.5e-118 430.6 275 78.9
Sc12g0011080 Simmondsia chinensis HOM05D004748 ORTHO05D005825 4.4e-118 429.1 300 73.3
SEGI_05538 Sequoiadendron giganteum HOM05D004748 ORTHO05D005825 3.7e-117 426.0 251 84.1
vmacro17059 Vaccinium macrocarpon HOM05D004748 ORTHO05D005825 1.1e-97 361.3 206 87.9
Haze_16292 Corylus avellana HOM05D004748 ORTHO05D005825 1.5e-86 324.3 188 84.0
Cpa.g.sc67.6 Carica papaya HOM05D004748 ORTHO05D005825 1.3e-85 321.2 187 84.5
Cre06.g289150 Chlamydomonas reinhardtii HOM05D004748 ORTHO05D005825 9.9e-78 295.0 330 47.3
MCO14G368 Micromonas commoda HOM05D004748 ORTHO05D005825 4.9e-77 292.7 335 46.6
C06p13150 Brassica napus HOM05D004748 ORTHO05D005825 8.4e-77 292.0 180 80.6
FAN02G4052 Fragaria x ananassa HOM05D004748 ORTHO05D005825 1.0e-61 241.9 143 82.5
BcaB04g17188 Brassica carinata HOM05D001232 ORTHO05D001073 2.9e-61 240.4 356 45.8
FAN02G0724 Fragaria x ananassa HOM05D004748 ORTHO05D005825 4.9e-61 239.6 132 86.4
Haze_26513 Corylus avellana HOM05D004748 ORTHO05D005825 6.0e-59 232.6 334 37.1
Cpa.g.sc67.3 Carica papaya HOM05D004748 ORTHO05D005825 3.8e-53 213.4 120 82.5
PRCOL_00004355 Prasinoderma coloniale HOM05D004748 ORTHO05D005825 1.8e-50 204.5 374 36.4
Actinidia00640 Actinidia chinensis HOM05D004748 ORTHO05D005825 7.4e-41 172.6 103 79.6
Actinidia00641 Actinidia chinensis HOM05D004748 ORTHO05D005825 1.2e-38 165.2 109 78.0
GSVIVG01029613001 Vitis vinifera HOM05D004748 ORTHO05D005825 2.6e-30 137.5 181 50.8
CARHR041770 Cardamine hirsuta HOM05D004748 ORTHO05D005825 1.3e-29 135.2 128 56.2
Haze_16294 Corylus avellana HOM05D004748 ORTHO05D005825 3.8e-29 133.7 79 84.8
SEGI_05879 Sequoiadendron giganteum HOM05D004748 ORTHO05D002681 1.5e-28 131.7 101 64.4
FAN05G1723 Fragaria x ananassa HOM05D000043 ORTHO05D001551 1.6e-27 128.3 79 78.5
SEGI_34839 Sequoiadendron giganteum HOM05D004748 ORTHO05D005825 3.9e-26 123.6 78 73.1
BcaC03g16763 Brassica carinata HOM05D004748 ORTHO05D005825 4.4e-25 120.2 75 77.3
C02p46400 Brassica napus HOM05D004748 ORTHO05D005825 4.4e-25 120.2 75 77.3
BolC2t10691H Brassica oleracea HOM05D004748 ORTHO05D005825 4.4e-25 120.2 75 77.3
CAN.G126.34 Capsicum annuum HOM05D004748 ORTHO05D005825 2.2e-24 117.9 187 35.3
GSVIVG01029603001 Vitis vinifera HOM05D004748 ORTHO05D005825 4.8e-24 116.7 64 87.5
A04p28800 Brassica napus HOM05D004748 ORTHO05D005825 6.3e-24 116.3 75 74.7
BraA08t33859Z Brassica rapa HOM05D004748 ORTHO05D005825 6.3e-24 116.3 75 74.7
Haze_16297 Corylus avellana HOM05D004748 ORTHO05D005825 6.3e-24 116.3 103 60.2
BraA04t18357Z Brassica rapa HOM05D004748 ORTHO05D005825 2.4e-23 114.4 75 73.3
RcHm_v2.0_Chr1g0341791 Rosa chinensis HOM05D004748 ORTHO05D005825 9.4e-20 102.4 64 79.7
RcHm_v2.0_Chr7g0197681 Rosa chinensis HOM05D004748 ORTHO05D005825 1.2e-14 85.5 54 83.3
arahy.Tifrunner.gnm1.ann1.W4KKVA Arachis hypogaea HOM05D005785 ORTHO05D007962 1.0e-13 82.4 44 90.9
A10p03860 Brassica napus HOM05D004748 ORTHO05D005825 3.8e-13 80.5 82 53.7
HanXRQChr10g0284771 Helianthus annuus HOM05D004748 ORTHO05D005825 1.2e-09 68.9 35 91.4
BraA10t42660Z Brassica rapa HOM05D004748 ORTHO05D005825 2.6e-09 67.8 67 55.2
GSVIVG01029622001 Vitis vinifera HOM05D004748 ORTHO05D005825 7.5e-09 66.2 36 86.1
FAN03G2435 Fragaria x ananassa HOM05D000153 ORTHO05D000118 3.1e-07 60.8 35 77.1
SEGI_11704 Sequoiadendron giganteum HOM05D004748 ORTHO05D006250 3.1e-07 60.8 37 73.0
HanXRQChr12g0383231 Helianthus annuus HOM05D002835 ORTHO05D003008 9.1e-07 59.3 59 47.5


User provided reference genes

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