Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy7G02340 Aquilegia oxysepala HOM05D004228 ORTHO05D005137 0.0e+00 1564.3 778 100.0
TAR626G1406 Trochodendron aralioides HOM05D004228 ORTHO05D005137 0.0e+00 1292.7 777 81.0
CSS0026873 Camellia sinensis var. sinensis HOM05D004228 ORTHO05D005137 0.0e+00 1234.9 777 76.6
Dinv21435 Davidia involucrata HOM05D004228 ORTHO05D005137 0.0e+00 1233.0 778 77.1
Prupe.3G104700 Prunus persica HOM05D004228 ORTHO05D005137 0.0e+00 1233.0 775 76.4
RcHm_v2.0_Chr2g0132121 Rosa chinensis HOM05D004228 ORTHO05D005137 0.0e+00 1223.4 770 75.8
GSVIVG01016092001 Vitis vinifera HOM05D004228 ORTHO05D005137 0.0e+00 1222.2 770 76.5
Nn8g40122 Nelumbo nucifera HOM05D004228 ORTHO05D005137 0.0e+00 1221.1 756 77.5
FvH4_6g28160 Fragaria vesca HOM05D004228 ORTHO05D005137 0.0e+00 1220.3 770 75.7
PSO170G5168 Papaver somniferum HOM05D004228 ORTHO05D005137 0.0e+00 1218.0 773 77.6
CiPaw.02G164000 Carya illinoinensis HOM05D004228 ORTHO05D005137 0.0e+00 1206.8 768 75.3
Actinidia25487 Actinidia chinensis HOM05D004228 ORTHO05D005137 0.0e+00 1202.6 768 74.6
FAN14G1073 Fragaria x ananassa HOM05D004228 ORTHO05D005137 0.0e+00 1199.9 807 72.1
Rhsim08G0202500 Rhododendron simsii HOM05D004228 ORTHO05D005137 0.0e+00 1194.9 810 70.9
FAN09G0969 Fragaria x ananassa HOM05D004228 ORTHO05D005137 0.0e+00 1194.1 811 71.8
Lj6g0018144 Lotus japonicus HOM05D004228 ORTHO05D005137 0.0e+00 1193.3 765 75.9
Potri.003G185600 Populus trichocarpa HOM05D004228 ORTHO05D005137 0.0e+00 1191.4 771 75.1
Solyc08g075390.4 Solanum lycopersicum HOM05D004228 ORTHO05D005137 0.0e+00 1191.4 774 74.7
Ca_13679_v3 Cicer arietinum L. HOM05D004228 ORTHO05D005137 0.0e+00 1188.7 770 74.5
CANSAT64G2586 Cannabis sativa HOM05D004228 ORTHO05D005137 0.0e+00 1187.9 776 73.7
Potri.003G185776 Populus trichocarpa HOM05D004228 ORTHO05D005137 0.0e+00 1187.6 771 74.8
Potri.003G185951 Populus trichocarpa HOM05D004228 ORTHO05D005137 0.0e+00 1187.6 771 74.7
Sopen08g024020 Solanum pennellii HOM05D004228 ORTHO05D005137 0.0e+00 1187.2 774 74.4
Ciclev10024933m.g Citrus clementina HOM05D004228 ORTHO05D005137 0.0e+00 1185.6 766 74.7
Thecc.06G048200 Theobroma cacao HOM05D004228 ORTHO05D005137 0.0e+00 1185.6 773 73.2
MSTRG.13911 Avicennia marina HOM05D004228 ORTHO05D005137 0.0e+00 1183.7 770 73.8
ATR0789G048 Amborella trichopoda HOM05D004228 ORTHO05D005137 0.0e+00 1182.5 780 74.0
Duzib160G0712 Durio zibethinus HOM05D004228 ORTHO05D005137 0.0e+00 1182.2 773 73.4
Cc08_g05800 Coffea canephora HOM05D004228 ORTHO05D005137 0.0e+00 1181.0 776 74.0
CAN.G930.1 Capsicum annuum HOM05D004228 ORTHO05D005137 0.0e+00 1179.9 767 73.9
Glyma.13G072500 Glycine max HOM05D004228 ORTHO05D005137 0.0e+00 1175.2 771 73.7
TWI12G1267 Tripterygium wilfordii HOM05D004228 ORTHO05D005137 0.0e+00 1171.4 775 73.4
Psat4g022640 Pisum sativum HOM05D004228 ORTHO05D005137 0.0e+00 1170.6 765 73.2
arahy.Tifrunner.gnm1.ann1.1BZV33 Arachis hypogaea HOM05D004228 ORTHO05D005137 0.0e+00 1169.8 757 75.0
Sed0017026 Sechium edule HOM05D004228 ORTHO05D005137 0.0e+00 1166.0 769 73.7
Lalb_Chr18g0048351 Lupinus albus HOM05D004228 ORTHO05D005137 0.0e+00 1165.2 770 73.5
Gorai.011G001100 Gossypium raimondii HOM05D004228 ORTHO05D005137 0.0e+00 1164.4 772 73.3
Phvul.006G018900 Phaseolus vulgaris HOM05D004228 ORTHO05D005137 0.0e+00 1163.3 765 73.2
Gohir.D10G000700 Gossypium hirsutum HOM05D004228 ORTHO05D005137 0.0e+00 1161.4 771 73.0
Gohir.A10G000600 Gossypium hirsutum HOM05D004228 ORTHO05D005137 0.0e+00 1160.2 773 73.0
VMungo0540G0565 Vigna mungo HOM05D004228 ORTHO05D005137 0.0e+00 1154.8 765 72.5
Atru.chr1.2817 Acer truncatum HOM05D004228 ORTHO05D005137 0.0e+00 1154.4 754 74.9
Ah.09g231750 Amaranthus hybridus HOM05D004228 ORTHO05D005137 0.0e+00 1152.1 770 73.1
CsaV3_7G031770 Cucumis sativus L. HOM05D004228 ORTHO05D005137 0.0e+00 1147.9 758 73.9
Migut.E01375 Erythranthe guttata HOM05D004228 ORTHO05D005137 0.0e+00 1147.1 777 71.3
EL10Ac8g19421 Beta vulgaris HOM05D004228 ORTHO05D005137 0.0e+00 1144.4 769 72.6
DCAR_030908 Daucus carota HOM05D004228 ORTHO05D005137 0.0e+00 1143.6 769 71.1
HPP92_017167 Vanilla planifolia HOM05D004228 ORTHO05D005137 0.0e+00 1143.6 769 71.3
ECA233G3708 Erigeron canadensis HOM05D004228 ORTHO05D005137 0.0e+00 1143.3 770 72.2
MELO3C023479.2 Cucumis melo HOM05D004228 ORTHO05D005137 0.0e+00 1142.1 760 73.6
HanXRQChr13g0411161 Helianthus annuus HOM05D004228 ORTHO05D005137 0.0e+00 1141.3 766 72.6
MELO3C023478.2 Cucumis melo HOM05D004228 ORTHO05D005137 0.0e+00 1140.9 770 71.7
THA.LOC104813593 Tarenaya hassleriana HOM05D004228 ORTHO05D005137 0.0e+00 1136.7 772 71.1
CsaV3_7G031780 Cucumis sativus L. HOM05D004228 ORTHO05D005137 0.0e+00 1133.6 769 72.2
Sabra03G0135800 Salix brachista HOM05D004228 ORTHO05D005137 0.0e+00 1132.1 781 71.1
Lsat_1_v5_gn_3_53241 Lactuca sativa HOM05D004228 ORTHO05D005137 0.0e+00 1127.1 770 72.2
Haze_16698 Corylus avellana HOM05D004228 ORTHO05D005137 0.0e+00 1117.4 883 63.8
Thhalv10018131m.g Eutrema salsugineum HOM05D004228 ORTHO05D005137 0.0e+00 1117.4 773 70.0
HanXRQChr17g0558091 Helianthus annuus HOM05D004228 ORTHO05D005137 0.0e+00 1116.7 775 70.5
AUR62002649 Chenopodium quinoa HOM05D004228 ORTHO05D005137 0.0e+00 1116.3 788 69.5
BraA07t30343Z Brassica rapa HOM05D004228 ORTHO05D005137 0.0e+00 1114.8 772 69.9
ClCG09G003440 Citrullus lanatus HOM05D004228 ORTHO05D005137 0.0e+00 1114.4 781 70.2
Sp5g34750 Schrenkiella parvula HOM05D004228 ORTHO05D005137 0.0e+00 1113.6 770 69.2
BcaNung04171 Brassica carinata HOM05D004228 ORTHO05D005137 0.0e+00 1112.1 770 69.1
CARHR073460 Cardamine hirsuta HOM05D004228 ORTHO05D005137 0.0e+00 1111.7 770 69.4
BolC6t38132H Brassica oleracea HOM05D004228 ORTHO05D005137 0.0e+00 1108.6 772 69.2
A07p26990 Brassica napus HOM05D004228 ORTHO05D005137 0.0e+00 1107.8 772 69.3
C06p29710 Brassica napus HOM05D004228 ORTHO05D005137 0.0e+00 1106.7 772 69.2
BcaB02g07234 Brassica carinata HOM05D004228 ORTHO05D005137 0.0e+00 1105.1 770 69.2
Os02g0793300 Oryza sativa ssp. japonica HOM05D004228 ORTHO05D005137 0.0e+00 1105.1 778 69.4
DCAR_002193 Daucus carota HOM05D004228 ORTHO05D005137 0.0e+00 1104.7 770 69.4
Lsat_1_v5_gn_6_17241 Lactuca sativa HOM05D004228 ORTHO05D005137 0.0e+00 1104.4 771 70.6
Zm00001eb192570 Zea mays HOM05D004228 ORTHO05D005137 0.0e+00 1104.4 773 69.2
AT1G79690 Arabidopsis thaliana HOM05D004228 ORTHO05D005137 0.0e+00 1102.0 770 69.4
AL2G40390 Arabidopsis lyrata HOM05D004228 ORTHO05D005137 0.0e+00 1094.0 770 69.1
BcaB02g08706 Brassica carinata HOM05D004228 ORTHO05D005137 0.0e+00 1092.4 770 68.7
Carub.0002s2655 Capsella rubella HOM05D004228 ORTHO05D005137 0.0e+00 1091.3 770 68.7
ECA240G4106 Erigeron canadensis HOM05D004228 ORTHO05D005137 0.0e+00 1083.2 774 69.0
BcaC08g47528 Brassica carinata HOM05D004228 ORTHO05D005137 0.0e+00 1082.0 770 68.6
Actinidia18265 Actinidia chinensis HOM05D004228 ORTHO05D005137 0.0e+00 1080.1 676 75.3
ECA240G2553 Erigeron canadensis HOM05D004228 ORTHO05D005137 0.0e+00 1077.8 744 69.9
Aa31LG4G1300 Aethionema arabicum HOM05D004228 ORTHO05D005137 0.0e+00 1075.1 771 68.0
C06p53520 Brassica napus HOM05D004228 ORTHO05D005137 5.3e-310 1067.4 780 67.4
BraA07t31978Z Brassica rapa HOM05D004228 ORTHO05D005137 4.0e-302 1041.2 778 66.1
BolC6t40368H Brassica oleracea HOM05D004228 ORTHO05D005137 5.3e-302 1040.8 780 66.0
Medtr3g437740 Medicago truncatula HOM05D004228 ORTHO05D005137 7.1e-299 1030.4 695 71.9
MELO3C023481.2 Cucumis melo HOM05D004228 ORTHO05D005137 9.3e-299 1030.0 763 66.6
A07p44700 Brassica napus HOM05D004228 ORTHO05D005137 1.6e-298 1029.2 783 65.4
Peaxi162Scf00193g00726 Petunia axillaris HOM05D004228 ORTHO05D005137 1.1e-296 1023.1 739 68.7
THA.LOC104808168 Tarenaya hassleriana HOM05D004228 ORTHO05D005137 2.5e-296 1021.9 780 64.6
vmacro19079 Vaccinium macrocarpon HOM05D004228 ORTHO05D005137 8.1e-295 1016.9 762 66.7
MD17G1227300 Malus domestica HOM05D004228 ORTHO05D005137 2.0e-293 1012.3 764 67.0
ATR0580G052 Amborella trichopoda HOM05D004228 ORTHO05D005137 7.6e-293 1010.4 742 66.7
FAN02G0630 Fragaria x ananassa HOM05D004228 ORTHO05D005137 6.5e-292 1007.3 688 71.4
Eucgr.J03134 Eucalyptus grandis HOM05D004228 ORTHO05D005137 8.4e-292 1006.9 668 74.0
SGA_v2.0_scaffold121G33058 Striga asiatica HOM05D004228 ORTHO05D005137 3.2e-291 1005.0 790 64.6
unitig_37.g12907 Utricularia gibba HOM05D004228 ORTHO05D005137 1.8e-289 999.2 770 64.3
SMO337G0028 Selaginella moellendorffii HOM05D004228 ORTHO05D005137 2.4e-286 988.8 770 62.5
VMungo1080G1878 Vigna mungo HOM05D004228 ORTHO05D005137 5.0e-284 981.1 738 66.7
Mapoly0059s0059 Marchantia polymorpha HOM05D004228 ORTHO05D005137 2.3e-281 972.2 764 63.2
Pp3c5_190 Physcomitrium patens HOM05D004228 ORTHO05D005137 6.9e-278 960.7 766 63.2
arahy.Tifrunner.gnm1.ann1.GHRN5T Arachis hypogaea HOM05D004228 ORTHO05D005137 6.7e-273 944.1 748 65.0
arahy.Tifrunner.gnm1.ann1.XEX8KQ Arachis hypogaea HOM05D004228 ORTHO05D005137 5.7e-264 914.4 774 62.1
Nitab4.5_0000030g0500 Nicotiana tabacum HOM05D004228 ORTHO05D005137 1.9e-259 899.4 662 67.4
Nitab4.5_0002244g0120 Nicotiana tabacum HOM05D004228 ORTHO05D005137 1.6e-258 896.3 635 69.8
AagrBONN_evm.TU.Sc2ySwM_117.2286 Anthoceros agrestis HOM05D004228 ORTHO05D005137 9.7e-256 887.1 706 62.7
Lsat_1_v5_gn_0_21180 Lactuca sativa HOM05D004228 ORTHO05D005137 2.4e-238 829.3 647 64.0
Lsat_1_v5_gn_0_21260 Lactuca sativa HOM05D004228 ORTHO05D005137 2.0e-237 826.2 663 62.9
Manes.11G069700 Manihot esculenta HOM05D004228 ORTHO05D005137 3.6e-234 815.5 529 74.5
CsaV3_7G031760 Cucumis sativus L. HOM05D004228 ORTHO05D003934 1.4e-230 803.5 579 67.5
Hma1.2p1_0338F.1_g129690 Hydrangea macrophylla HOM05D004228 ORTHO05D005137 5.2e-225 785.0 511 73.2
AUR62034058 Chenopodium quinoa HOM05D004228 ORTHO05D005137 1.3e-223 780.4 758 55.3
arahy.Tifrunner.gnm1.ann1.W5V7W0 Arachis hypogaea HOM05D004228 ORTHO05D005137 4.3e-187 659.1 445 71.7
Oeu057157.1 Olea europaea HOM05D004228 ORTHO05D005137 1.6e-186 657.1 440 71.6
PSO017G2203 Papaver somniferum HOM05D004228 ORTHO05D005137 2.3e-156 557.0 354 76.3
PSO017G5477 Papaver somniferum HOM05D004228 ORTHO05D005137 7.4e-155 552.0 369 74.5
MBI14_g16439_MAGBIO Magnolia biondii HOM05D004228 ORTHO05D005137 2.7e-149 533.5 610 50.0
SEGI_32687 Sequoiadendron giganteum HOM05D004228 ORTHO05D005137 7.0e-121 439.1 342 62.0
COL.COLO4_26790 Corchorus olitorius HOM05D004228 ORTHO05D005137 6.8e-116 422.5 272 75.4
Cpa.g.sc167.19 Carica papaya HOM05D004228 ORTHO05D005137 1.9e-94 351.3 249 66.3
Lsat_1_v5_gn_3_49001 Lactuca sativa HOM05D004228 ORTHO05D005137 6.2e-93 346.3 250 66.4
MBI14_g16438_MAGBIO Magnolia biondii HOM05D004228 ORTHO05D005137 7.1e-81 306.2 185 78.4
COL.COLO4_26791 Corchorus olitorius HOM05D004228 ORTHO05D005137 6.2e-77 293.1 356 46.1
MD09G1228800 Malus domestica HOM05D004228 ORTHO05D005137 9.3e-73 279.3 266 55.6
RcHm_v2.0_Chr2g0132171 Rosa chinensis HOM05D004228 ORTHO05D005137 7.4e-70 269.6 260 58.1
Gorai.007G245800 Gossypium raimondii HOM05D004228 ORTHO05D005137 2.1e-69 268.1 155 81.3
MD00G1188200 Malus domestica HOM05D004228 ORTHO05D005137 1.2e-67 262.3 252 56.0
Gorai.008G198300 Gossypium raimondii HOM05D004228 ORTHO05D005137 6.4e-66 256.5 137 86.9
Gohir.D12G184901 Gossypium hirsutum HOM05D004228 ORTHO05D005137 3.3e-62 244.2 137 83.2
CBR_g49119 Chara braunii HOM05D004228 ORTHO05D005137 9.6e-62 242.7 229 54.6
Lsat_1_v5_gn_6_87921 Lactuca sativa HOM05D004228 ORTHO05D005137 5.5e-57 226.9 210 59.0
Nitab4.5_0002244g0110 Nicotiana tabacum HOM05D004228 ORTHO05D005137 7.2e-49 199.9 109 87.2
Gorai.006G048700 Gossypium raimondii HOM05D004228 ORTHO05D005137 2.1e-48 198.4 105 85.7
Nitab4.5_0000030g0490 Nicotiana tabacum HOM05D004228 ORTHO05D005137 1.8e-47 195.3 106 87.7
Oeu057158.1 Olea europaea HOM05D004228 ORTHO05D005137 3.0e-47 194.5 107 84.1
Glyma.20G046501 Glycine max HOM05D004228 ORTHO05D005137 4.8e-45 187.2 150 61.3
CBR_g49132 Chara braunii HOM05D004228 ORTHO05D005137 9.1e-44 183.0 148 62.2
CBR_g49120 Chara braunii HOM05D000019 ORTHO05D000002 1.3e-42 179.1 212 47.2
SEGI_04747 Sequoiadendron giganteum HOM05D004228 ORTHO05D005137 5.5e-41 173.7 108 69.4
Cfa001845 Carpinus fangiana HOM05D004228 ORTHO05D005137 7.9e-40 169.9 118 69.5
FAN02G0140 Fragaria x ananassa HOM05D004228 ORTHO05D005137 2.3e-39 168.3 103 76.7
SEGI_17966 Sequoiadendron giganteum HOM05D004228 ORTHO05D005137 2.2e-37 161.8 110 69.1
MD09G1229100 Malus domestica HOM05D004228 ORTHO05D005137 1.8e-36 158.7 85 82.4
SEGI_21553 Sequoiadendron giganteum HOM05D004228 ORTHO05D005137 3.1e-36 157.9 101 70.3
Gorai.002G214900 Gossypium raimondii HOM05D004228 ORTHO05D005137 8.5e-34 149.8 79 83.5
Gohir.A06G076350 Gossypium hirsutum HOM05D004228 ORTHO05D005137 1.1e-33 149.4 97 75.3
Gohir.D02G099801 Gossypium hirsutum HOM05D004228 ORTHO05D005137 1.1e-33 149.4 97 75.3
Gohir.A07G034550 Gossypium hirsutum HOM05D004228 ORTHO05D005137 2.5e-33 148.3 97 74.2
Gohir.A05G304350 Gossypium hirsutum HOM05D004228 ORTHO05D005137 2.7e-32 144.8 83 80.7
Glyma.20G046401 Glycine max HOM05D004228 ORTHO05D005137 1.4e-31 142.5 95 75.8
CBR_g49131 Chara braunii HOM05D007088 ORTHO05D008477 6.7e-31 140.2 95 65.3
Gohir.D13G121066 Gossypium hirsutum HOM05D004228 ORTHO05D005137 1.1e-30 139.4 79 77.2
CDE02G2004 Ceratophyllum demersum HOM05D004228 ORTHO05D005137 2.0e-27 128.6 100 68.0
MD00G1188000 Malus domestica HOM05D004228 ORTHO05D005137 5.5e-25 120.6 72 76.4
SEGI_15998 Sequoiadendron giganteum HOM05D004228 ORTHO05D005137 2.3e-23 115.2 86 66.3
Gohir.D09G001001 Gossypium hirsutum HOM05D004228 ORTHO05D005137 9.7e-22 109.8 214 35.0
MCO12G087 Micromonas commoda HOM05D004228 ORTHO05D005137 1.3e-21 109.4 153 42.5
Gorai.009G406300 Gossypium raimondii HOM05D004228 ORTHO05D005137 7.0e-20 103.6 214 34.1
Lsat_1_v5_gn_5_149700 Lactuca sativa HOM05D004228 ORTHO05D016156 1.1e-17 96.3 86 59.3
Actinidia00024 Actinidia chinensis HOM05D000639 ORTHO05D019441 4.4e-14 84.3 79 54.4
Gohir.A11G044150 Gossypium hirsutum HOM05D004228 ORTHO05D005137 2.2e-13 82.0 51 76.5
MBI14_g16442_MAGBIO Magnolia biondii HOM05D004228 ORTHO05D005137 1.2e-11 76.3 45 75.6
Cre08.g381800 Chlamydomonas reinhardtii HOM05D004228 ORTHO05D005137 2.7e-11 75.1 182 33.0
Pp3c5_70 Physcomitrium patens HOM05D004228 ORTHO05D005137 1.5e-09 69.3 44 65.9
Cpa.g.sc167.21 Carica papaya HOM05D004228 ORTHO05D043558 3.3e-09 68.2 37 70.3
Lsat_1_v5_gn_4_114980 Lactuca sativa HOM05D004228 ORTHO05D005137 2.3e-07 62.0 58 56.9
MD00G1188100 Malus domestica HOM05D004228 ORTHO05D043558 3.4e-06 58.2 29 79.3


User provided reference genes

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