Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy7G02289 Aquilegia oxysepala HOM05D004202 ORTHO05D005021 1.8e-148 529.3 271 100.0
TAR383G0028 Trochodendron aralioides HOM05D004202 ORTHO05D005021 4.1e-92 342.0 266 65.8
Aqoxy4G02272 Aquilegia oxysepala HOM05D004202 ORTHO05D005021 2.0e-91 339.7 260 67.3
LjContig00542g0021230 Lotus japonicus HOM05D004202 ORTHO05D005021 2.0e-91 339.7 218 74.3
VMungo0331G0004 Vigna mungo HOM05D004202 ORTHO05D005021 3.4e-91 339.0 232 70.3
Cfa001960 Carpinus fangiana HOM05D004202 ORTHO05D005021 4.5e-91 338.6 217 75.1
Nn8g39505 Nelumbo nucifera HOM05D004202 ORTHO05D005021 5.9e-91 338.2 236 70.8
Haze_16560 Corylus avellana HOM05D004202 ORTHO05D005021 7.7e-91 337.8 219 74.0
PSO017G2363 Papaver somniferum HOM05D004202 ORTHO05D005021 1.0e-90 337.4 260 69.2
MBI04_g19388_MAGBIO Magnolia biondii HOM05D004202 ORTHO05D005021 1.3e-90 337.0 232 70.7
PSO170G3116 Papaver somniferum HOM05D004202 ORTHO05D005021 1.3e-90 337.0 229 76.4
Glyma.07G029800 Glycine max HOM05D004202 ORTHO05D005021 1.4e-89 333.6 233 73.0
CiPaw.01G248300 Carya illinoinensis HOM05D004202 ORTHO05D005021 5.5e-89 331.6 219 73.1
CSS0029540 Camellia sinensis var. sinensis HOM05D004202 ORTHO05D005021 7.2e-89 331.3 214 75.2
CSS0043041 Camellia sinensis var. sinensis HOM05D004202 ORTHO05D005021 7.2e-89 331.3 214 75.2
Eucgr.F03877 Eucalyptus grandis HOM05D004202 ORTHO05D005021 1.2e-88 330.5 213 74.2
Glyma.08G213100 Glycine max HOM05D004202 ORTHO05D005021 1.2e-88 330.5 217 75.6
Dinv30605 Davidia involucrata HOM05D004202 ORTHO05D005021 2.7e-88 329.3 276 62.0
Prupe.3G087500 Prunus persica HOM05D004202 ORTHO05D005021 2.7e-88 329.3 244 67.2
RcHm_v2.0_Chr2g0135261 Rosa chinensis HOM05D004202 ORTHO05D005021 2.7e-88 329.3 239 69.9
Actinidia01745 Actinidia chinensis HOM05D004202 ORTHO05D005021 3.6e-88 328.9 219 74.0
Lsat_1_v5_gn_4_90081 Lactuca sativa HOM05D004202 ORTHO05D005021 3.6e-88 328.9 273 64.5
Rhsim08G0212900 Rhododendron simsii HOM05D004202 ORTHO05D005021 3.6e-88 328.9 222 73.4
Ciclev10026224m.g Citrus clementina HOM05D004202 ORTHO05D005021 1.0e-87 327.4 214 77.1
Manes.04G112600 Manihot esculenta HOM05D004202 ORTHO05D005021 1.0e-87 327.4 218 72.0
SalBow2G2770 Salvia bowleyana HOM05D004202 ORTHO05D005021 1.4e-87 327.0 268 62.3
Lj9A500T78 Lonicera japonica HOM05D004202 ORTHO05D005021 2.3e-87 326.2 216 73.1
ECA232G2164 Erigeron canadensis HOM05D004202 ORTHO05D005021 3.0e-87 325.9 250 68.0
FvH4_6g29670 Fragaria vesca HOM05D004202 ORTHO05D005021 3.9e-87 325.5 213 74.2
FAN05G3204 Fragaria x ananassa HOM05D004202 ORTHO05D005021 3.9e-87 325.5 213 74.2
Oeu042085.1 Olea europaea HOM05D004202 ORTHO05D005021 3.9e-87 325.5 215 70.7
Lj5A72T20 Lonicera japonica HOM05D004202 ORTHO05D005021 5.1e-87 325.1 214 74.8
FAN09G0069 Fragaria x ananassa HOM05D004202 ORTHO05D005021 8.8e-87 324.3 213 73.7
HanXRQChr02g0058561 Helianthus annuus HOM05D004202 ORTHO05D005021 1.1e-86 323.9 259 66.8
Oeu013862.1 Olea europaea HOM05D004202 ORTHO05D005021 1.5e-86 323.6 215 71.2
Duzib235G0370 Durio zibethinus HOM05D004202 ORTHO05D005021 2.6e-86 322.8 224 71.0
HanXRQChr16g0500411 Helianthus annuus HOM05D004202 ORTHO05D005021 2.6e-86 322.8 244 69.7
MD17G1212200 Malus domestica HOM05D004202 ORTHO05D005021 2.6e-86 322.8 264 63.3
Manes.11G056900 Manihot esculenta HOM05D004202 ORTHO05D005021 2.6e-86 322.8 222 70.3
Lalb_Chr01g0012351 Lupinus albus HOM05D004202 ORTHO05D005021 3.3e-86 322.4 239 65.7
COL.COLO4_11948 Corchorus olitorius HOM05D004202 ORTHO05D005021 4.4e-86 322.0 219 71.7
Phvul.010G156400 Phaseolus vulgaris HOM05D004202 ORTHO05D005021 4.4e-86 322.0 265 62.3
QL05p029813 Quercus lobata HOM05D004202 ORTHO05D005021 5.7e-86 321.6 213 74.2
Solyc06g068150.3 Solanum lycopersicum HOM05D004202 ORTHO05D005021 5.7e-86 321.6 212 72.6
Thecc.06G024900 Theobroma cacao HOM05D004202 ORTHO05D005021 5.7e-86 321.6 219 72.6
TPR.G38651 Trifolium pratense HOM05D004202 ORTHO05D005021 7.4e-86 321.2 226 67.7
Psat7g257200 Pisum sativum HOM05D004202 ORTHO05D005021 9.7e-86 320.9 224 68.8
SGA_v2.0_scaffold37G14766 Striga asiatica HOM05D004202 ORTHO05D005021 1.3e-85 320.5 211 73.0
Atru.chr1.2949 Acer truncatum HOM05D004202 ORTHO05D005021 1.7e-85 320.1 217 70.0
Peaxi162Scf00207g00630 Petunia axillaris HOM05D004202 ORTHO05D005021 1.7e-85 320.1 225 72.4
TWI18G0582 Tripterygium wilfordii HOM05D004202 ORTHO05D005021 1.7e-85 320.1 214 72.4
Cpa.g.sc10.268 Carica papaya HOM05D004202 ORTHO05D005021 2.8e-85 319.3 214 76.2
Potri.001G204100 Populus trichocarpa HOM05D004202 ORTHO05D005021 2.8e-85 319.3 245 66.1
MSTRG.11142 Avicennia marina HOM05D004202 ORTHO05D005021 3.7e-85 318.9 214 72.0
CANSAT56G4089 Cannabis sativa HOM05D004202 ORTHO05D005021 3.7e-85 318.9 226 71.7
Medtr4g010120 Medicago truncatula HOM05D004202 ORTHO05D005021 4.8e-85 318.5 216 70.4
Sopen06g025420 Solanum pennellii HOM05D004202 ORTHO05D005021 8.2e-85 317.8 218 70.2
Potri.003G032200 Populus trichocarpa HOM05D004202 ORTHO05D005021 1.4e-84 317.0 219 71.2
Sed0008120 Sechium edule HOM05D004202 ORTHO05D005021 1.4e-84 317.0 214 70.1
Ca_20447_v3 Cicer arietinum L. HOM05D004202 ORTHO05D005021 1.8e-84 316.6 228 67.5
CAN.G1503.7 Capsicum annuum HOM05D004202 ORTHO05D005021 5.3e-84 315.1 243 65.8
Hma1.2p1_0042F.1_g025610 Hydrangea macrophylla HOM05D004202 ORTHO05D005021 5.3e-84 315.1 223 68.2
Hma1.2p1_1144F.1_g261300 Hydrangea macrophylla HOM05D004202 ORTHO05D005021 5.3e-84 315.1 216 70.8
Ah.01g020590 Amaranthus hybridus HOM05D004202 ORTHO05D005021 9.1e-84 314.3 259 63.3
PGR102G1411 Punica granatum HOM05D004202 ORTHO05D005021 9.1e-84 314.3 218 69.7
arahy.Tifrunner.gnm1.ann1.KAJ2Z5 Arachis hypogaea HOM05D004202 ORTHO05D005021 1.2e-83 313.9 213 71.8
Prupe.3G087400 Prunus persica HOM05D004202 ORTHO05D005021 3.4e-83 312.4 223 69.1
PGSC0003DMG400028510 Solanum tuberosum HOM05D004202 ORTHO05D005021 3.4e-83 312.4 218 68.8
arahy.Tifrunner.gnm1.ann1.J5QNAH Arachis hypogaea HOM05D004202 ORTHO05D005021 5.9e-83 311.6 215 71.2
Sabra03G0018400 Salix brachista HOM05D004202 ORTHO05D005021 7.7e-83 311.2 247 66.4
arahy.Tifrunner.gnm1.ann1.42NKCZ Arachis hypogaea HOM05D004202 ORTHO05D005021 1.0e-82 310.8 213 71.4
FAN14G0864 Fragaria x ananassa HOM05D004202 ORTHO05D005021 1.0e-82 310.8 237 66.2
THA.LOC104810509 Tarenaya hassleriana HOM05D004202 ORTHO05D005021 1.3e-82 310.5 258 63.6
CAN.G407.80 Capsicum annuum HOM05D004202 ORTHO05D005021 2.2e-82 309.7 221 70.6
Duzib192G0312 Durio zibethinus HOM05D004202 ORTHO05D005021 2.9e-82 309.3 223 68.2
BraA05t22181Z Brassica rapa HOM05D004202 ORTHO05D005021 3.8e-82 308.9 214 70.1
CARHR090910 Cardamine hirsuta HOM05D004202 ORTHO05D005021 5.0e-82 308.5 218 69.3
Migut.I00763 Erythranthe guttata HOM05D004202 ORTHO05D005021 5.0e-82 308.5 214 74.3
Nitab4.5_0003463g0060 Nicotiana tabacum HOM05D004202 ORTHO05D005021 5.0e-82 308.5 217 70.5
Aa31LG8G3020 Aethionema arabicum HOM05D004202 ORTHO05D005021 8.5e-82 307.8 253 62.8
BcaC01g03855 Brassica carinata HOM05D004202 ORTHO05D005021 1.1e-81 307.4 214 69.2
A03p39480 Brassica napus HOM05D004202 ORTHO05D005021 1.1e-81 307.4 214 69.2
A05p33580 Brassica napus HOM05D004202 ORTHO05D005021 1.1e-81 307.4 262 60.7
C03p47880 Brassica napus HOM05D004202 ORTHO05D005021 1.1e-81 307.4 214 69.2
BolC3t17065H Brassica oleracea HOM05D004202 ORTHO05D005021 1.1e-81 307.4 214 69.2
BraA03t13098Z Brassica rapa HOM05D004202 ORTHO05D005021 1.1e-81 307.4 214 69.2
Gohir.A06G185500 Gossypium hirsutum HOM05D004202 ORTHO05D005021 1.1e-81 307.4 219 68.9
BcaB06g25690 Brassica carinata HOM05D004202 ORTHO05D005021 1.9e-81 306.6 214 70.1
Nitab4.5_0008575g0020 Nicotiana tabacum HOM05D004202 ORTHO05D005021 1.9e-81 306.6 271 60.1
Sopen03g035650 Solanum pennellii HOM05D004202 ORTHO05D005021 1.9e-81 306.6 215 69.8
BcaC05g28930 Brassica carinata HOM05D004202 ORTHO05D005021 2.5e-81 306.2 262 60.7
C05p50570 Brassica napus HOM05D004202 ORTHO05D005021 2.5e-81 306.2 262 60.7
PGSC0003DMG400000640 Solanum tuberosum HOM05D004202 ORTHO05D005021 3.2e-81 305.8 259 61.8
AL3G28480 Arabidopsis lyrata HOM05D004202 ORTHO05D005021 4.2e-81 305.4 214 70.6
BolC5t33802H Brassica oleracea HOM05D004202 ORTHO05D005021 4.2e-81 305.4 262 60.7
Carub.0003s1556 Capsella rubella HOM05D004202 ORTHO05D005021 4.2e-81 305.4 214 70.1
DCAR_025511 Daucus carota HOM05D004202 ORTHO05D005021 4.2e-81 305.4 257 61.1
AT3G15820 Arabidopsis thaliana HOM05D004202 ORTHO05D005021 5.5e-81 305.1 214 70.6
Sp3g14140 Schrenkiella parvula HOM05D004202 ORTHO05D005021 5.5e-81 305.1 214 68.7
Hund06558 Selenicereus undatus HOM05D004202 ORTHO05D005021 5.5e-81 305.1 219 69.4
Solyc03g116740.3 Solanum lycopersicum HOM05D004202 ORTHO05D005021 5.5e-81 305.1 258 62.0
CsaV3_4G001700 Cucumis sativus L. HOM05D004202 ORTHO05D005021 7.2e-81 304.7 209 69.4
Thhalv10021241m.g Eutrema salsugineum HOM05D004202 ORTHO05D005021 9.4e-81 304.3 214 69.2
ClCG07G012460 Citrullus lanatus HOM05D004202 ORTHO05D005021 1.6e-80 303.5 216 67.6
Gorai.010G225300 Gossypium raimondii HOM05D004202 ORTHO05D005021 1.6e-80 303.5 216 69.0
Sc10g0005940 Simmondsia chinensis HOM05D004202 ORTHO05D005021 2.1e-80 303.1 228 63.6
Peaxi162Scf00332g00619 Petunia axillaris HOM05D004202 ORTHO05D005021 2.7e-80 302.8 267 60.3
MELO3C017864.2 Cucumis melo HOM05D004202 ORTHO05D005021 3.6e-80 302.4 209 68.9
Gohir.D06G192100 Gossypium hirsutum HOM05D004202 ORTHO05D005021 8.0e-80 301.2 216 68.5
Lj3g0004144 Lotus japonicus HOM05D004202 ORTHO05D005021 8.0e-80 301.2 218 68.3
AUR62011519 Chenopodium quinoa HOM05D004202 ORTHO05D005021 3.9e-79 298.9 216 67.1
Carub.0003s1557 Capsella rubella HOM05D004202 ORTHO05D005021 5.2e-79 298.5 214 70.6
EL10Ac9g21900 Beta vulgaris HOM05D004202 ORTHO05D005021 4.4e-78 295.4 268 58.2
Sc10g0008080 Simmondsia chinensis HOM05D004202 ORTHO05D005021 5.7e-78 295.0 214 66.8
AL3G28490 Arabidopsis lyrata HOM05D004202 ORTHO05D005021 7.4e-78 294.7 214 70.6
AT3G15830 Arabidopsis thaliana HOM05D004202 ORTHO05D005021 9.7e-78 294.3 214 70.6
AUR62016337 Chenopodium quinoa HOM05D004202 ORTHO05D005021 1.3e-77 293.9 210 67.6
Gohir.D05G124300 Gossypium hirsutum HOM05D004202 ORTHO05D005021 3.7e-77 292.4 211 69.2
BcaC09g48559 Brassica carinata HOM05D004202 ORTHO05D005021 1.4e-76 290.4 215 67.9
C01p48640 Brassica napus HOM05D004202 ORTHO05D005021 1.4e-76 290.4 215 67.9
BcaB04g20901 Brassica carinata HOM05D004202 ORTHO05D005021 2.4e-76 289.7 214 67.3
Gorai.009G128300 Gossypium raimondii HOM05D004202 ORTHO05D005021 3.1e-76 289.3 211 68.7
BolC1t04818H Brassica oleracea HOM05D004202 ORTHO05D005021 4.1e-76 288.9 215 67.4
Gohir.A05G123350 Gossypium hirsutum HOM05D004202 ORTHO05D005021 3.5e-75 285.8 208 66.3
unitig_699.g19094 Utricularia gibba HOM05D004202 ORTHO05D005021 4.5e-75 285.4 207 64.7
BraA01t03881Z Brassica rapa HOM05D004202 ORTHO05D005021 1.3e-74 283.9 215 66.5
A01p38300 Brassica napus HOM05D004202 ORTHO05D005021 1.7e-74 283.5 214 66.8
CDE07G1814 Ceratophyllum demersum HOM05D004202 ORTHO05D005021 1.7e-74 283.5 211 70.1
GSVIVG01017341001 Vitis vinifera HOM05D004202 ORTHO05D005021 5.0e-74 282.0 175 76.6
HPP92_023144 Vanilla planifolia HOM05D004202 ORTHO05D005021 1.9e-73 280.0 196 70.4
Lj3g0021663 Lotus japonicus HOM05D004202 ORTHO05D005021 2.5e-73 279.6 233 63.5
Cc04_g04400 Coffea canephora HOM05D004202 ORTHO05D005021 3.2e-73 279.3 177 75.7
CARHR090920 Cardamine hirsuta HOM05D004202 ORTHO05D005021 4.7e-72 275.4 214 65.0
Thhalv10015624m.g Eutrema salsugineum HOM05D004202 ORTHO05D005021 1.0e-71 274.2 209 61.7
MBI04_g42944_MAGBIO Magnolia biondii HOM05D004202 ORTHO05D005021 6.7e-71 271.6 179 73.2
A02p09730 Brassica napus HOM05D004202 ORTHO05D005021 2.2e-69 266.5 213 59.6
BraA02t06038Z Brassica rapa HOM05D004202 ORTHO05D005021 2.2e-69 266.5 213 59.6
BcaC03g14245 Brassica carinata HOM05D004202 ORTHO05D005021 4.8e-69 265.4 213 59.6
C02p16260 Brassica napus HOM05D004202 ORTHO05D005021 4.8e-69 265.4 213 59.6
BolC2t07727H Brassica oleracea HOM05D004202 ORTHO05D005021 4.8e-69 265.4 213 59.6
BcaB05g22200 Brassica carinata HOM05D004202 ORTHO05D005021 1.1e-68 264.2 227 56.4
Lsat_1_v5_gn_1_34380 Lactuca sativa HOM05D004202 ORTHO05D005021 5.2e-63 245.4 222 62.6
Os06g0607100 Oryza sativa ssp. japonica HOM05D004202 ORTHO05D005021 5.2e-63 245.4 196 62.2
Oeu013866.1 Olea europaea HOM05D004202 ORTHO05D005021 2.3e-58 229.9 215 54.4
Sabra01G0157700 Salix brachista HOM05D004202 ORTHO05D005021 2.9e-58 229.6 250 52.0
Mapoly0019s0013 Marchantia polymorpha HOM05D004202 ORTHO05D005021 3.8e-58 229.2 208 54.3
Thecc.06G024300 Theobroma cacao HOM05D004202 ORTHO05D005021 3.3e-57 226.1 136 80.9
Thecc.06G024700 Theobroma cacao HOM05D004202 ORTHO05D005021 9.5e-57 224.6 136 80.1
Sp6g17250 Schrenkiella parvula HOM05D004202 ORTHO05D005021 2.6e-54 216.5 213 53.5
Oeu013867.1 Olea europaea HOM05D004202 ORTHO05D005021 1.7e-53 213.8 215 54.0
Lalb_Chr25g0279291 Lupinus albus HOM05D004202 ORTHO05D005021 3.7e-53 212.6 131 80.2
FAN02G2528 Fragaria x ananassa HOM05D004202 ORTHO05D005021 4.9e-53 212.2 277 45.5
Pp3c20_11410 Physcomitrium patens HOM05D004202 ORTHO05D005021 5.0e-50 202.2 248 43.5
BcaB01g04346 Brassica carinata HOM05D004202 ORTHO05D005021 1.7e-42 177.2 216 46.3
Oeu042081.1 Olea europaea HOM05D004202 ORTHO05D005021 1.5e-38 164.1 177 52.0
Pp3c8_10870 Physcomitrium patens HOM05D004202 ORTHO05D005021 1.5e-38 164.1 160 50.6
Actinidia15761 Actinidia chinensis HOM05D004202 ORTHO05D005021 1.7e-34 150.6 143 52.4
Nitab4.5_0000373g0050 Nicotiana tabacum HOM05D004202 ORTHO05D005021 7.1e-28 128.6 79 78.5
Lalb_Chr25g0279281 Lupinus albus HOM05D004202 ORTHO05D005021 7.3e-17 92.0 103 46.6
Nitab4.5_0000373g0060 Nicotiana tabacum HOM05D004202 ORTHO05D005021 4.4e-14 82.8 65 53.8
AagrBONN_evm.TU.Sc2ySwM_228.136 Anthoceros agrestis HOM05D004202 ORTHO05D005021 4.2e-12 76.3 89 42.7
Lj5P198T82 Lonicera japonica HOM05D004202 ORTHO05D005021 3.5e-11 73.2 65 50.8
Zm00001eb386530 Zea mays HOM05D004202 ORTHO05D005021 1.1e-09 68.2 63 49.2
BcaB08g35892 Brassica carinata HOM05D004202 ORTHO05D096023 1.6e-08 64.3 81 48.1
Nn5g27834 Nelumbo nucifera HOM05D004202 ORTHO05D005021 6.2e-08 62.4 40 70.0
Lj5P204T31 Lonicera japonica HOM05D004202 ORTHO05D005021 4.0e-07 59.7 63 46.0


User provided reference genes

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