Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy7G02288 Aquilegia oxysepala HOM05D004002 ORTHO05D004668 0.0e+00 2587.8 1356 100.0
TAR636G2372 Trochodendron aralioides HOM05D004002 ORTHO05D004668 0.0e+00 2006.1 1371 76.4
PSO170G6007 Papaver somniferum HOM05D004002 ORTHO05D004668 0.0e+00 1931.8 1369 73.7
PSO017G4586 Papaver somniferum HOM05D004002 ORTHO05D004668 0.0e+00 1927.9 1370 73.5
MBI04_g29332_MAGBIO Magnolia biondii HOM05D004002 ORTHO05D004668 0.0e+00 1875.9 1365 72.7
Nn2g12080 Nelumbo nucifera HOM05D004002 ORTHO05D004668 0.0e+00 1862.0 1366 72.2
CANSAT11G1469 Cannabis sativa HOM05D004002 ORTHO05D004668 0.0e+00 1818.5 1366 69.3
Cfa003405 Carpinus fangiana HOM05D004002 ORTHO05D004668 0.0e+00 1812.3 1362 70.8
Atru.chr7.1118 Acer truncatum HOM05D004002 ORTHO05D004668 0.0e+00 1810.0 1359 70.1
Actinidia21966 Actinidia chinensis HOM05D004002 ORTHO05D004668 0.0e+00 1809.3 1366 70.6
Thecc.09G129800 Theobroma cacao HOM05D004002 ORTHO05D004668 0.0e+00 1803.5 1363 70.2
Manes.14G114600 Manihot esculenta HOM05D004002 ORTHO05D004668 0.0e+00 1801.9 1365 69.7
Prupe.7G246700 Prunus persica HOM05D004002 ORTHO05D004668 0.0e+00 1800.0 1356 70.1
CiPaw.03G246900 Carya illinoinensis HOM05D004002 ORTHO05D004668 0.0e+00 1796.2 1362 68.9
TWI32G0682 Tripterygium wilfordii HOM05D004002 ORTHO05D004668 0.0e+00 1795.8 1358 69.1
MD02G1028100 Malus domestica HOM05D004002 ORTHO05D004668 0.0e+00 1792.7 1359 69.5
RcHm_v2.0_Chr2g0087941 Rosa chinensis HOM05D004002 ORTHO05D004668 0.0e+00 1792.7 1358 70.3
Duzib168G0398 Durio zibethinus HOM05D004002 ORTHO05D004668 0.0e+00 1789.6 1359 69.2
COL.COLO4_35123 Corchorus olitorius HOM05D004002 ORTHO05D004668 0.0e+00 1773.1 1377 69.4
FvH4_1g02820 Fragaria vesca HOM05D004002 ORTHO05D004668 0.0e+00 1773.1 1366 67.7
FAN28G1420 Fragaria x ananassa HOM05D004002 ORTHO05D004668 0.0e+00 1773.1 1366 67.9
Glyma.13G158400 Glycine max HOM05D004002 ORTHO05D004668 0.0e+00 1761.5 1368 67.5
Duzib187G1937 Durio zibethinus HOM05D004002 ORTHO05D004668 0.0e+00 1760.0 1360 68.4
FAN19G2815 Fragaria x ananassa HOM05D004002 ORTHO05D004668 0.0e+00 1758.8 1396 66.6
Gorai.001G043400 Gossypium raimondii HOM05D004002 ORTHO05D004668 0.0e+00 1755.7 1368 67.2
ClCG06G011370 Citrullus lanatus HOM05D004002 ORTHO05D004668 0.0e+00 1755.3 1366 68.6
MD15G1169800 Malus domestica HOM05D004002 ORTHO05D004668 0.0e+00 1753.8 1356 68.9
Gohir.D07G040800 Gossypium hirsutum HOM05D004002 ORTHO05D004668 0.0e+00 1752.6 1368 67.1
MELO3C010320.2 Cucumis melo HOM05D004002 ORTHO05D004668 0.0e+00 1748.4 1367 68.2
Gohir.A07G036800 Gossypium hirsutum HOM05D004002 ORTHO05D004668 0.0e+00 1748.4 1368 67.0
Potri.018G128400 Populus trichocarpa HOM05D004002 ORTHO05D004668 0.0e+00 1748.4 1365 68.1
Cc06_g08210 Coffea canephora HOM05D004002 ORTHO05D004668 0.0e+00 1745.3 1371 67.2
Ca_30460_v3 Cicer arietinum L. HOM05D004002 ORTHO05D004668 0.0e+00 1736.5 1360 66.5
Nitab4.5_0001776g0030 Nicotiana tabacum HOM05D004002 ORTHO05D004668 0.0e+00 1733.0 1380 66.8
DCAR_014896 Daucus carota HOM05D004002 ORTHO05D004668 0.0e+00 1732.6 1366 67.2
Ciclev10007259m.g Citrus clementina HOM05D004002 ORTHO05D004668 0.0e+00 1729.9 1361 67.5
Lj4g0004437 Lotus japonicus HOM05D004002 ORTHO05D004668 0.0e+00 1727.2 1359 66.6
Lalb_Chr13g0301701 Lupinus albus HOM05D004002 ORTHO05D004668 0.0e+00 1727.2 1359 67.0
Medtr4g114930 Medicago truncatula HOM05D004002 ORTHO05D004668 0.0e+00 1727.2 1352 67.0
Sopen07g003960 Solanum pennellii HOM05D004002 ORTHO05D004668 0.0e+00 1716.8 1355 67.0
Sc18g0000460 Simmondsia chinensis HOM05D004002 ORTHO05D004668 0.0e+00 1716.4 1377 67.2
CAN.G138.14 Capsicum annuum HOM05D004002 ORTHO05D004668 0.0e+00 1712.2 1357 66.8
Gohir.A08G238400 Gossypium hirsutum HOM05D004002 ORTHO05D004668 0.0e+00 1712.2 1367 65.8
vmacro20578 Vaccinium macrocarpon HOM05D004002 ORTHO05D004668 0.0e+00 1706.8 1430 64.1
Gorai.004G276600 Gossypium raimondii HOM05D004002 ORTHO05D004668 0.0e+00 1705.3 1367 65.8
GSVIVG01015557001 Vitis vinifera HOM05D004002 ORTHO05D004668 0.0e+00 1704.5 1281 70.9
FAN23G1361 Fragaria x ananassa HOM05D004002 ORTHO05D004668 0.0e+00 1701.8 1366 65.9
QL02p089511 Quercus lobata HOM05D004002 ORTHO05D004668 0.0e+00 1698.7 1573 59.7
Gohir.D08G259100 Gossypium hirsutum HOM05D004002 ORTHO05D004668 0.0e+00 1694.9 1376 65.3
Lsat_1_v5_gn_7_43900 Lactuca sativa HOM05D004002 ORTHO05D004668 0.0e+00 1694.9 1374 65.6
THA.LOC104811026 Tarenaya hassleriana HOM05D004002 ORTHO05D004668 0.0e+00 1691.4 1358 66.1
Rhsim01G0066800 Rhododendron simsii HOM05D004002 ORTHO05D004668 0.0e+00 1691.0 1375 66.4
arahy.Tifrunner.gnm1.ann1.R22NLQ Arachis hypogaea HOM05D004002 ORTHO05D004668 0.0e+00 1687.5 1353 66.5
arahy.Tifrunner.gnm1.ann1.S50ZLM Arachis hypogaea HOM05D004002 ORTHO05D004668 0.0e+00 1682.9 1371 66.2
CDE03G0124 Ceratophyllum demersum HOM05D004002 ORTHO05D004668 0.0e+00 1682.9 1378 64.2
Lalb_Chr12g0198051 Lupinus albus HOM05D004002 ORTHO05D004668 0.0e+00 1679.5 1367 64.8
Sed0021658 Sechium edule HOM05D004002 ORTHO05D004668 0.0e+00 1664.8 1362 66.1
AUR62013328 Chenopodium quinoa HOM05D004002 ORTHO05D004668 0.0e+00 1660.2 1374 64.8
Sp1g41730 Schrenkiella parvula HOM05D004002 ORTHO05D004668 0.0e+00 1657.9 1361 64.0
HanXRQChr09g0241521 Helianthus annuus HOM05D004002 ORTHO05D004668 0.0e+00 1655.6 1371 64.6
Eucgr.C04259 Eucalyptus grandis HOM05D004002 ORTHO05D004668 0.0e+00 1655.2 1231 71.0
BcaC08g43677 Brassica carinata HOM05D004002 ORTHO05D004668 0.0e+00 1653.6 1361 64.6
SalBow1G7082 Salvia bowleyana HOM05D004002 ORTHO05D004668 0.0e+00 1650.6 1364 64.6
AT3G33530 Arabidopsis thaliana HOM05D004002 ORTHO05D004668 0.0e+00 1648.6 1362 64.1
Carub.0016s0010 Capsella rubella HOM05D004002 ORTHO05D004668 0.0e+00 1647.9 1361 64.5
FAN26G1964 Fragaria x ananassa HOM05D004002 ORTHO05D004668 0.0e+00 1647.9 1397 63.4
Dinv36495 Davidia involucrata HOM05D004002 ORTHO05D004668 0.0e+00 1647.5 1358 65.0
BcaB07g33169 Brassica carinata HOM05D004002 ORTHO05D004668 0.0e+00 1645.9 1374 63.8
AL5G20770 Arabidopsis lyrata HOM05D004002 ORTHO05D004668 0.0e+00 1644.4 1366 63.9
C06p10960 Brassica napus HOM05D004002 ORTHO05D004668 0.0e+00 1643.6 1362 64.3
BraSC56t46385Z Brassica rapa HOM05D004002 ORTHO05D004668 0.0e+00 1639.8 1381 63.6
HPP92_024596 Vanilla planifolia HOM05D004002 ORTHO05D004668 0.0e+00 1638.6 1371 64.0
BolC6t36178H Brassica oleracea HOM05D004002 ORTHO05D004668 0.0e+00 1634.0 1383 63.6
Ah.09g225140 Amaranthus hybridus HOM05D004002 ORTHO05D004668 0.0e+00 1620.5 1373 63.6
ECA236G2336 Erigeron canadensis HOM05D004002 ORTHO05D004668 0.0e+00 1615.5 1366 62.9
CsaV3_1G030400 Cucumis sativus L. HOM05D004002 ORTHO05D004668 0.0e+00 1613.6 1371 64.6
HanXRQChr05g0143441 Helianthus annuus HOM05D004002 ORTHO05D004668 0.0e+00 1610.5 1382 62.4
Lsat_1_v5_gn_8_62220 Lactuca sativa HOM05D004002 ORTHO05D004668 0.0e+00 1608.6 1378 62.8
Hund26527 Selenicereus undatus HOM05D004002 ORTHO05D004668 0.0e+00 1608.2 1367 62.8
MSTRG.26413 Avicennia marina HOM05D004002 ORTHO05D004668 0.0e+00 1604.3 1294 65.1
TPR.G26484 Trifolium pratense HOM05D004002 ORTHO05D004668 0.0e+00 1604.3 1353 63.2
ATR1120G180 Amborella trichopoda HOM05D004002 ORTHO05D004668 0.0e+00 1598.9 1357 63.9
Aa31LG4G12760 Aethionema arabicum HOM05D004002 ORTHO05D004668 0.0e+00 1577.8 1434 59.9
THA.LOC104808973 Tarenaya hassleriana HOM05D004002 ORTHO05D004668 0.0e+00 1569.3 1363 61.6
DCAR_010315 Daucus carota HOM05D004002 ORTHO05D004668 0.0e+00 1567.0 1371 60.8
Thhalv10011188m.g Eutrema salsugineum HOM05D004002 ORTHO05D004668 0.0e+00 1557.7 1261 64.5
EL10Ac8g18695 Beta vulgaris HOM05D004002 ORTHO05D004668 0.0e+00 1534.6 1378 61.0
SGA_v2.0_scaffold109G31044 Striga asiatica HOM05D004002 ORTHO05D004668 0.0e+00 1528.1 1410 58.9
Zm00001eb231770 Zea mays HOM05D004002 ORTHO05D004668 0.0e+00 1518.4 1360 61.0
AUR62011160 Chenopodium quinoa HOM05D004002 ORTHO05D004668 0.0e+00 1495.7 1242 64.0
AL4G19600 Arabidopsis lyrata HOM05D004002 ORTHO05D004668 0.0e+00 1494.9 1353 59.4
AT2G26610 Arabidopsis thaliana HOM05D004002 ORTHO05D004668 0.0e+00 1494.2 1356 59.0
Carub.0004s0687 Capsella rubella HOM05D004002 ORTHO05D004668 0.0e+00 1491.9 1356 58.9
FAN23G2019 Fragaria x ananassa HOM05D004002 ORTHO05D004668 0.0e+00 1472.2 1187 66.5
Aa31LG5G9160 Aethionema arabicum HOM05D004002 ORTHO05D004668 0.0e+00 1454.1 1379 57.9
A03p26850 Brassica napus HOM05D004002 ORTHO05D004668 0.0e+00 1400.6 1344 56.1
BraA03t11897Z Brassica rapa HOM05D004002 ORTHO05D004668 0.0e+00 1400.6 1344 56.1
BcaC01g04911 Brassica carinata HOM05D004002 ORTHO05D004668 0.0e+00 1398.3 1346 56.0
Nitab4.5_0000028g0120 Nicotiana tabacum HOM05D004002 ORTHO05D004668 0.0e+00 1397.9 1134 65.3
Sp4g09400 Schrenkiella parvula HOM05D004002 ORTHO05D004668 0.0e+00 1392.1 1360 56.5
C03p32190 Brassica napus HOM05D004002 ORTHO05D004668 0.0e+00 1391.7 1345 55.9
BolC3t15561H Brassica oleracea HOM05D004002 ORTHO05D004668 0.0e+00 1387.9 1342 56.0
BcaB01g03030 Brassica carinata HOM05D004002 ORTHO05D004668 0.0e+00 1382.5 1356 55.8
SEGI_17541 Sequoiadendron giganteum HOM05D004002 ORTHO05D004668 0.0e+00 1352.0 1273 58.1
Sabra18G0109200 Salix brachista HOM05D004002 ORTHO05D004668 0.0e+00 1342.4 1051 70.1
Ca_06931_v3 Cicer arietinum L. HOM05D004002 ORTHO05D004668 0.0e+00 1332.8 1013 69.3
Dinv41488 Davidia involucrata HOM05D004002 ORTHO05D004668 0.0e+00 1325.8 943 74.1
Sed0028143 Sechium edule HOM05D004002 ORTHO05D004668 0.0e+00 1308.1 1027 69.3
Cpa.g.sc46.23 Carica papaya HOM05D004002 ORTHO05D004668 0.0e+00 1236.1 1481 51.7
VMungo1215G3423 Vigna mungo HOM05D004002 ORTHO05D004668 0.0e+00 1210.7 859 73.5
Phvul.003G167101 Phaseolus vulgaris HOM05D004002 ORTHO05D004668 0.0e+00 1206.0 861 73.6
ECA240G2868 Erigeron canadensis HOM05D004002 ORTHO05D004668 0.0e+00 1181.4 845 73.7
Pp3c11_23650 Physcomitrium patens HOM05D004002 ORTHO05D004668 0.0e+00 1181.4 1402 48.0
Peaxi162Scf00891g00220 Petunia axillaris HOM05D004002 ORTHO05D004668 0.0e+00 1177.2 1012 64.7
Lj7C426G10 Lonicera japonica HOM05D004002 ORTHO05D004668 0.0e+00 1171.8 1015 66.2
Pp3c7_2590 Physcomitrium patens HOM05D004002 ORTHO05D004668 0.0e+00 1171.4 1389 47.2
Mapoly0041s0113 Marchantia polymorpha HOM05D004002 ORTHO05D004668 0.0e+00 1163.3 1410 47.9
unitig_748.g7159 Utricularia gibba HOM05D004002 ORTHO05D004668 0.0e+00 1162.1 1412 50.4
Psat4g037880 Pisum sativum HOM05D004002 ORTHO05D004668 0.0e+00 1142.9 937 63.6
Migut.K00437 Erythranthe guttata HOM05D004002 ORTHO05D004668 4.6e-311 1071.6 902 62.4
Os02g0137000 Oryza sativa ssp. japonica HOM05D004002 ORTHO05D004668 1.4e-302 1043.5 771 72.2
Nn8g39500 Nelumbo nucifera HOM05D004002 ORTHO05D004668 6.8e-289 998.0 652 80.2
AagrBONN_evm.TU.Sc2ySwM_368.2316 Anthoceros agrestis HOM05D004002 ORTHO05D004668 1.7e-276 956.8 1070 52.3
SMO347G0439 Selaginella moellendorffii HOM05D004002 ORTHO05D004668 1.9e-275 953.4 1084 50.6
CBR_g41081 Chara braunii HOM05D004002 ORTHO05D004668 6.5e-247 858.6 1571 37.6
CARHR153610 Cardamine hirsuta HOM05D004002 ORTHO05D004668 2.5e-238 830.1 615 69.8
Haze_25541 Corylus avellana HOM05D004002 ORTHO05D004668 2.6e-216 756.9 928 51.9
Haze_25542 Corylus avellana HOM05D004002 ORTHO05D004668 1.2e-203 714.9 674 58.2
Aqoxy7G02287 Aquilegia oxysepala HOM05D004002 ORTHO05D004668 3.5e-200 703.4 421 88.8
CsaV3_UNG026150 Cucumis sativus L. HOM05D004002 ORTHO05D004668 1.4e-193 681.4 758 52.9
SHI03370 Sapria himalayana HOM05D004002 ORTHO05D000023 1.2e-176 625.2 582 59.1
CsaV3_UNG023150 Cucumis sativus L. HOM05D004002 ORTHO05D004668 8.3e-170 602.4 572 60.8
Haze_25536 Corylus avellana HOM05D004002 ORTHO05D004668 1.9e-166 591.3 421 75.1
Psat4g037920 Pisum sativum HOM05D004002 ORTHO05D004668 1.9e-161 574.7 425 71.8
Migut.K00436 Erythranthe guttata HOM05D004002 ORTHO05D004668 1.7e-154 551.6 420 70.7
Oeu040328.1 Olea europaea HOM05D004002 ORTHO05D004668 7.9e-144 516.2 364 72.3
VMungo1215G0854 Vigna mungo HOM05D004002 ORTHO05D004668 7.4e-142 509.6 441 56.7
Oeu012614.1 Olea europaea HOM05D004002 ORTHO05D004668 4.2e-113 414.1 534 44.9
Lj7A426T59 Lonicera japonica HOM05D004002 ORTHO05D004668 9.4e-113 412.9 340 60.0
ECA240G1422 Erigeron canadensis HOM05D004002 ORTHO05D004668 1.8e-111 408.7 422 54.0
Ca_06930_v3 Cicer arietinum L. HOM05D004002 ORTHO05D004668 5.7e-110 403.7 340 58.8
Solyc07g008090.4 Solanum lycopersicum HOM05D004002 ORTHO05D004668 4.5e-107 394.0 333 58.6
Sabra18G0109300 Salix brachista HOM05D004002 ORTHO05D004668 5.3e-100 370.5 345 53.9
SEGI_36835 Sequoiadendron giganteum HOM05D004002 ORTHO05D004668 4.2e-97 360.9 330 54.5
SHI03372 Sapria himalayana HOM05D004002 ORTHO05D004668 2.1e-96 358.6 331 55.0
Hund09270 Selenicereus undatus HOM05D004002 ORTHO05D004668 6.8e-95 353.6 260 71.9
Solyc07g008075.1 Solanum lycopersicum HOM05D004002 ORTHO05D004668 6.3e-85 320.5 221 78.3
Os02g0136933 Oryza sativa ssp. japonica HOM05D004002 ORTHO05D004668 1.4e-84 319.3 337 50.7
Haze_13487 Corylus avellana HOM05D004002 ORTHO05D004668 2.3e-74 285.4 239 56.5
Dinv41489 Davidia involucrata HOM05D004002 ORTHO05D004668 3.3e-73 281.6 272 58.8
CDE04G2506 Ceratophyllum demersum HOM05D004002 ORTHO05D004668 2.5e-65 255.4 277 55.2
SHI03368 Sapria himalayana HOM05D004002 ORTHO05D004668 1.5e-57 229.6 218 60.6
Haze_18451 Corylus avellana HOM05D004002 ORTHO05D004668 8.4e-45 187.2 132 62.1
Lsat_1_v5_gn_0_43201 Lactuca sativa HOM05D004002 ORTHO05D004668 1.3e-40 173.3 115 77.4
Lsat_1_v5_gn_8_63461 Lactuca sativa HOM05D004002 ORTHO05D004668 7.1e-36 157.5 203 48.3
Oeu040327.1 Olea europaea HOM05D004002 ORTHO05D004668 4.8e-32 144.8 117 64.1
BcaB07g33170 Brassica carinata HOM05D004002 ORTHO05D002109 9.9e-30 137.1 231 42.0
SHI03369 Sapria himalayana HOM05D004002 ORTHO05D004668 4.2e-28 131.7 112 59.8
Aqoxy7G02056 Aquilegia oxysepala HOM05D004002 ORTHO05D004668 1.5e-22 113.2 120 56.7
Hund09269 Selenicereus undatus HOM05D004002 ORTHO05D004668 2.0e-22 112.8 89 65.2
PSO541G4337 Papaver somniferum HOM05D004002 ORTHO05D004668 1.4e-20 106.7 81 66.7
Cre10.g449950 Chlamydomonas reinhardtii HOM05D004002 ORTHO05D004668 1.2e-19 103.6 384 22.9
C09p47760 Brassica napus HOM05D004002 ORTHO05D004668 6.0e-19 101.3 60 76.7
C04p60270 Brassica napus HOM05D004002 ORTHO05D004668 2.3e-18 99.4 60 75.0
BolC8t50699H Brassica oleracea HOM05D004002 ORTHO05D004668 2.3e-18 99.4 60 75.0
Medtr8g073750 Medicago truncatula HOM05D004002 ORTHO05D004668 3.9e-18 98.6 129 45.0
QL02p089531 Quercus lobata HOM05D004002 ORTHO05D004668 8.7e-18 97.4 72 72.2
BolC6t36594H Brassica oleracea HOM05D004002 ORTHO05D004668 1.1e-17 97.1 60 73.3
C06p14160 Brassica napus HOM05D004002 ORTHO05D004668 1.9e-17 96.3 58 74.1
ECA240G3712 Erigeron canadensis HOM05D004002 ORTHO05D004668 8.5e-13 80.9 92 47.8
TPR.G35745 Trifolium pratense HOM05D004002 ORTHO05D004668 1.1e-12 80.5 141 40.4
Sp1g38940 Schrenkiella parvula HOM05D004002 ORTHO05D004668 1.6e-11 76.6 85 52.9
RcHm_v2.0_Chr1g0384271 Rosa chinensis HOM05D004002 ORTHO05D004668 1.1e-09 70.5 58 60.3
HanXRQChr14g0456471 Helianthus annuus HOM05D000103 ORTHO05D000001 2.2e-08 66.2 59 64.4
HanXRQChr03g0064791 Helianthus annuus HOM05D004002 ORTHO05D004668 4.1e-07 62.0 67 55.2


User provided reference genes

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