Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy7G02147 Aquilegia oxysepala HOM05D003702 ORTHO05D004653 6.7e-132 474.2 263 100.0
Aqoxy5G03879 Aquilegia oxysepala HOM05D003702 ORTHO05D004653 2.3e-71 273.1 126 96.8
Eucgr.B02865 Eucalyptus grandis HOM05D003702 ORTHO05D004653 1.0e-68 264.2 126 92.9
MBI10_g06746_MAGBIO Magnolia biondii HOM05D003702 ORTHO05D004653 5.2e-68 261.9 126 91.3
Nn4g24020 Nelumbo nucifera HOM05D003702 ORTHO05D004653 6.8e-68 261.5 126 91.3
DCAR_030184 Daucus carota HOM05D003702 ORTHO05D004653 8.9e-68 261.2 126 90.5
Dinv16161 Davidia involucrata HOM05D003702 ORTHO05D004653 1.2e-67 260.8 126 90.5
PSO478G4444 Papaver somniferum HOM05D003702 ORTHO05D004653 1.2e-67 260.8 126 90.5
TAR371G0966 Trochodendron aralioides HOM05D003702 ORTHO05D004653 1.2e-67 260.8 126 90.5
Dinv04909 Davidia involucrata HOM05D003702 ORTHO05D004653 1.5e-67 260.4 126 90.5
Cc11_g09310 Coffea canephora HOM05D003702 ORTHO05D004653 2.0e-67 260.0 126 89.7
GSVIVG01011808001 Vitis vinifera HOM05D003702 ORTHO05D004653 2.0e-67 260.0 126 89.7
SalBow8G2252 Salvia bowleyana HOM05D003702 ORTHO05D004653 2.6e-67 259.6 126 90.5
Solyc05g008580.3 Solanum lycopersicum HOM05D003702 ORTHO05D004653 2.6e-67 259.6 126 88.9
Sopen05g004420 Solanum pennellii HOM05D003702 ORTHO05D004653 2.6e-67 259.6 126 88.9
PSO017G5274 Papaver somniferum HOM05D003702 ORTHO05D004653 3.4e-67 259.2 126 89.7
PGSC0003DMG400030564 Solanum tuberosum HOM05D003702 ORTHO05D004653 3.4e-67 259.2 126 88.1
ATR0691G123 Amborella trichopoda HOM05D003702 ORTHO05D004653 4.4e-67 258.8 126 91.3
Lj6A750T93 Lonicera japonica HOM05D003702 ORTHO05D004653 4.4e-67 258.8 126 90.5
MSTRG.2203 Avicennia marina HOM05D003702 ORTHO05D004653 7.5e-67 258.1 126 89.7
Cfa015818 Carpinus fangiana HOM05D003702 ORTHO05D004653 7.5e-67 258.1 126 89.7
Duzib268G1865 Durio zibethinus HOM05D003702 ORTHO05D004653 7.5e-67 258.1 126 88.9
Sabra08G0095000 Salix brachista HOM05D003702 ORTHO05D004653 7.5e-67 258.1 126 88.9
GSVIVG01008367001 Vitis vinifera HOM05D003702 ORTHO05D004653 9.8e-67 257.7 126 88.1
CSS0038999 Camellia sinensis var. sinensis HOM05D003702 ORTHO05D004653 1.3e-66 257.3 125 90.4
CAN.G139.1 Capsicum annuum HOM05D003702 ORTHO05D004653 1.3e-66 257.3 126 88.1
CAN.G1489.18 Capsicum annuum HOM05D003702 ORTHO05D004653 1.3e-66 257.3 126 88.1
COL.COLO4_38548 Corchorus olitorius HOM05D003702 ORTHO05D004653 1.3e-66 257.3 126 88.9
RcHm_v2.0_Chr4g0434061 Rosa chinensis HOM05D003702 ORTHO05D004653 1.3e-66 257.3 126 89.7
TAR629G3334 Trochodendron aralioides HOM05D003702 ORTHO05D004653 1.3e-66 257.3 126 88.9
Ciclev10015341m.g Citrus clementina HOM05D003702 ORTHO05D004653 1.7e-66 256.9 126 89.7
FvH4_4g26430 Fragaria vesca HOM05D003702 ORTHO05D004653 1.7e-66 256.9 126 88.9
Nitab4.5_0000350g0060 Nicotiana tabacum HOM05D003702 ORTHO05D004653 1.7e-66 256.9 126 88.1
Sed0021449 Sechium edule HOM05D003702 ORTHO05D004653 1.7e-66 256.9 126 88.1
TPR.G4874 Trifolium pratense HOM05D003702 ORTHO05D004653 1.7e-66 256.9 126 88.1
TWI75G1265 Tripterygium wilfordii HOM05D003702 ORTHO05D004653 1.7e-66 256.9 126 88.1
CDE07G1100 Ceratophyllum demersum HOM05D003702 ORTHO05D004653 2.2e-66 256.5 125 88.8
Duzib248G1136 Durio zibethinus HOM05D003702 ORTHO05D004653 2.2e-66 256.5 126 88.1
Lalb_Chr21g0308661 Lupinus albus HOM05D003702 ORTHO05D004653 2.2e-66 256.5 126 89.7
Psat6g222840 Pisum sativum HOM05D003702 ORTHO05D004653 2.2e-66 256.5 126 88.1
Potri.008G126100 Populus trichocarpa HOM05D003702 ORTHO05D004653 2.2e-66 256.5 126 88.1
Ca_30213_v3 Cicer arietinum L. HOM05D003702 ORTHO05D004653 2.8e-66 256.1 126 88.9
Gohir.A12G141400 Gossypium hirsutum HOM05D003702 ORTHO05D004653 2.8e-66 256.1 126 88.1
Gohir.D12G146300 Gossypium hirsutum HOM05D003702 ORTHO05D004653 2.8e-66 256.1 126 88.1
Gorai.008G157600 Gossypium raimondii HOM05D003702 ORTHO05D004653 2.8e-66 256.1 126 88.1
Peaxi162Scf00897g00114 Petunia axillaris HOM05D003702 ORTHO05D004653 2.8e-66 256.1 126 87.3
Atru.chr11.329 Acer truncatum HOM05D003702 ORTHO05D004653 3.7e-66 255.8 126 88.9
FAN07G0957 Fragaria x ananassa HOM05D003702 ORTHO05D004653 3.7e-66 255.8 126 88.9
FAN12G0213 Fragaria x ananassa HOM05D003702 ORTHO05D004653 3.7e-66 255.8 126 88.9
FAN12G3413 Fragaria x ananassa HOM05D003702 ORTHO05D004653 3.7e-66 255.8 126 88.9
FAN17G2320 Fragaria x ananassa HOM05D003702 ORTHO05D004653 3.7e-66 255.8 126 88.9
FAN22G0804 Fragaria x ananassa HOM05D003702 ORTHO05D004653 3.7e-66 255.8 126 88.1
Thecc.02G215000 Theobroma cacao HOM05D003702 ORTHO05D004653 3.7e-66 255.8 126 88.1
Lj5g0010985 Lotus japonicus HOM05D003702 ORTHO05D004653 4.9e-66 255.4 126 89.7
Prupe.1G319700 Prunus persica HOM05D003702 ORTHO05D004653 4.9e-66 255.4 126 88.9
PGR102G2387 Punica granatum HOM05D003702 ORTHO05D004653 4.9e-66 255.4 126 88.9
CiPaw.05G244900 Carya illinoinensis HOM05D003702 ORTHO05D004653 6.3e-66 255.0 126 88.1
MD16G1035000 Malus domestica HOM05D003702 ORTHO05D004653 6.3e-66 255.0 126 88.1
Nitab4.5_0004597g0050 Nicotiana tabacum HOM05D003702 ORTHO05D004653 6.3e-66 255.0 126 87.3
Oeu031392.1 Olea europaea HOM05D003702 ORTHO05D004653 6.3e-66 255.0 126 88.9
Manes.14G109300 Manihot esculenta HOM05D003702 ORTHO05D004653 8.3e-66 254.6 126 88.9
A09p61570 Brassica napus HOM05D003702 ORTHO05D004653 1.1e-65 254.2 126 85.7
BraA09t41530Z Brassica rapa HOM05D003702 ORTHO05D004653 1.1e-65 254.2 126 85.7
Migut.E00388 Erythranthe guttata HOM05D003702 ORTHO05D004653 1.1e-65 254.2 126 87.3
Oeu036128.1 Olea europaea HOM05D003702 ORTHO05D004653 1.1e-65 254.2 126 86.5
CARHR015630 Cardamine hirsuta HOM05D003702 ORTHO05D004653 1.8e-65 253.4 126 85.7
CiPaw.06G015200 Carya illinoinensis HOM05D003702 ORTHO05D004653 1.8e-65 253.4 126 86.5
Thhalv10007726m.g Eutrema salsugineum HOM05D003702 ORTHO05D004653 1.8e-65 253.4 126 85.7
Glyma.10G268300 Glycine max HOM05D003702 ORTHO05D004653 1.8e-65 253.4 126 87.3
Glyma.20G122800 Glycine max HOM05D003702 ORTHO05D004653 1.8e-65 253.4 126 87.3
Nitab4.5_0003886g0040 Nicotiana tabacum HOM05D003702 ORTHO05D004653 1.8e-65 253.4 126 88.1
AL1G27170 Arabidopsis lyrata HOM05D003702 ORTHO05D004653 2.4e-65 253.1 126 84.9
BcaC05g25442 Brassica carinata HOM05D003702 ORTHO05D004653 2.4e-65 253.1 126 84.9
A06p11110 Brassica napus HOM05D003702 ORTHO05D004653 2.4e-65 253.1 126 84.9
C05p13230 Brassica napus HOM05D003702 ORTHO05D004653 2.4e-65 253.1 126 84.9
BolC5t30060H Brassica oleracea HOM05D003702 ORTHO05D004653 2.4e-65 253.1 126 84.9
BraA06t24290Z Brassica rapa HOM05D003702 ORTHO05D004653 2.4e-65 253.1 126 84.9
Potri.010G117500 Populus trichocarpa HOM05D003702 ORTHO05D004653 2.4e-65 253.1 126 87.3
Sed0018132 Sechium edule HOM05D003702 ORTHO05D004653 2.4e-65 253.1 126 87.3
Sc14g0007250 Simmondsia chinensis HOM05D003702 ORTHO05D004653 2.4e-65 253.1 126 87.3
VMungo0720G1815 Vigna mungo HOM05D003702 ORTHO05D004653 2.4e-65 253.1 126 87.3
BcaB02g06576 Brassica carinata HOM05D003702 ORTHO05D004653 3.1e-65 252.7 126 84.9
Carub.0001s1487 Capsella rubella HOM05D003702 ORTHO05D004653 3.1e-65 252.7 126 84.9
MELO3C012286.2 Cucumis melo HOM05D003702 ORTHO05D004653 3.1e-65 252.7 126 88.1
Gohir.A09G005100 Gossypium hirsutum HOM05D003702 ORTHO05D004653 3.1e-65 252.7 125 88.0
Gohir.D09G004400 Gossypium hirsutum HOM05D003702 ORTHO05D004653 3.1e-65 252.7 125 88.0
MD13G1033100 Malus domestica HOM05D003702 ORTHO05D004653 3.1e-65 252.7 126 87.3
Medtr1g109120 Medicago truncatula HOM05D003702 ORTHO05D004653 3.1e-65 252.7 126 85.7
Solyc04g007520.3 Solanum lycopersicum HOM05D003702 ORTHO05D004653 3.1e-65 252.7 126 86.5
Sopen04g002600 Solanum pennellii HOM05D003702 ORTHO05D004653 3.1e-65 252.7 126 86.5
EL10Ac1g01504 Beta vulgaris HOM05D003702 ORTHO05D004653 4.1e-65 252.3 126 85.7
Manes.06G063400 Manihot esculenta HOM05D003702 ORTHO05D004653 4.1e-65 252.3 126 87.3
Phvul.007G034000 Phaseolus vulgaris HOM05D003702 ORTHO05D004653 4.1e-65 252.3 126 86.5
Sp1g13450 Schrenkiella parvula HOM05D003702 ORTHO05D004653 4.1e-65 252.3 126 84.9
THA.LOC104805051 Tarenaya hassleriana HOM05D003702 ORTHO05D004653 4.1e-65 252.3 126 85.7
Aa31LG1G40 Aethionema arabicum HOM05D003702 ORTHO05D004653 7.0e-65 251.5 126 84.1
BcaNung05515 Brassica carinata HOM05D003702 ORTHO05D004653 7.0e-65 251.5 126 84.9
C08p45160 Brassica napus HOM05D003702 ORTHO05D004653 7.0e-65 251.5 126 84.9
BolC8t52064H Brassica oleracea HOM05D003702 ORTHO05D004653 7.0e-65 251.5 126 84.9
CsaV3_5G034740 Cucumis sativus L. HOM05D003702 ORTHO05D004653 7.0e-65 251.5 126 88.1
Lalb_Chr02g0145651 Lupinus albus HOM05D003702 ORTHO05D004653 7.0e-65 251.5 126 87.3
AT1G15110 Arabidopsis thaliana HOM05D003702 ORTHO05D004653 9.2e-65 251.1 126 84.1
BcaB03g14561 Brassica carinata HOM05D003702 ORTHO05D004653 9.2e-65 251.1 126 84.9
Gorai.006G006000 Gossypium raimondii HOM05D003702 ORTHO05D004653 9.2e-65 251.1 125 87.2
MSTRG.7632 Avicennia marina HOM05D003702 ORTHO05D004653 2.0e-64 250.0 126 86.5
ECA233G3005 Erigeron canadensis HOM05D003702 ORTHO05D004653 2.0e-64 250.0 125 87.2
HanXRQChr17g0553131 Helianthus annuus HOM05D003702 ORTHO05D004653 2.0e-64 250.0 125 86.4
Sc04g0005900 Simmondsia chinensis HOM05D003702 ORTHO05D004653 2.0e-64 250.0 126 85.7
HanXRQChr14g0459241 Helianthus annuus HOM05D003702 ORTHO05D004653 2.7e-64 249.6 125 86.4
HPP92_008281 Vanilla planifolia HOM05D003702 ORTHO05D004653 2.7e-64 249.6 125 87.2
HPP92_026069 Vanilla planifolia HOM05D003702 ORTHO05D004653 2.7e-64 249.6 125 87.2
Zm00001eb334750 Zea mays HOM05D003702 ORTHO05D004653 2.7e-64 249.6 125 85.6
Lsat_1_v5_gn_8_41841 Lactuca sativa HOM05D003702 ORTHO05D004653 4.5e-64 248.8 125 87.2
arahy.Tifrunner.gnm1.ann1.8F881C Arachis hypogaea HOM05D003702 ORTHO05D004653 7.8e-64 248.1 125 84.8
arahy.Tifrunner.gnm1.ann1.A779NY Arachis hypogaea HOM05D003702 ORTHO05D004653 7.8e-64 248.1 125 84.8
MELO3C005332.2 Cucumis melo HOM05D003702 ORTHO05D004653 7.8e-64 248.1 125 87.2
CsaV3_5G028680 Cucumis sativus L. HOM05D003702 ORTHO05D004653 7.8e-64 248.1 125 87.2
ClCG01G006000 Citrullus lanatus HOM05D003702 ORTHO05D004653 1.0e-63 247.7 125 86.4
Hund20721 Selenicereus undatus HOM05D003702 ORTHO05D004653 1.0e-63 247.7 126 84.9
AUR62037259 Chenopodium quinoa HOM05D003702 ORTHO05D004653 1.3e-63 247.3 126 84.1
Lalb_Chr06g0165751 Lupinus albus HOM05D003702 ORTHO05D004653 1.3e-63 247.3 136 82.4
MSTRG.874 Avicennia marina HOM05D003702 ORTHO05D004653 1.7e-63 246.9 126 86.5
Rhsim09G0102000 Rhododendron simsii HOM05D003702 ORTHO05D004653 1.7e-63 246.9 137 81.0
Ah.05g167700 Amaranthus hybridus HOM05D003702 ORTHO05D004653 2.3e-63 246.5 125 84.0
Zm00001eb125990 Zea mays HOM05D003702 ORTHO05D004653 5.0e-63 245.4 125 86.4
Haze_00678 Corylus avellana HOM05D003702 ORTHO05D004653 8.6e-63 244.6 150 75.3
QL01p003075 Quercus lobata HOM05D003702 ORTHO05D004653 1.1e-62 244.2 135 80.0
Sed0016261 Sechium edule HOM05D003702 ORTHO05D004653 1.1e-62 244.2 125 85.6
Sed0022429 Sechium edule HOM05D003702 ORTHO05D004653 1.9e-62 243.4 125 84.8
Nitab4.5_0000881g0100 Nicotiana tabacum HOM05D003702 ORTHO05D004653 3.6e-61 239.2 149 73.8
Zm00001eb295120 Zea mays HOM05D003702 ORTHO05D004653 6.1e-61 238.4 125 81.6
ECA246G4421 Erigeron canadensis HOM05D003702 ORTHO05D004653 1.4e-60 237.3 125 83.2
Zm00001eb103650 Zea mays HOM05D003702 ORTHO05D004653 1.8e-60 236.9 125 81.6
Zm00001eb343120 Zea mays HOM05D003702 ORTHO05D004653 2.3e-60 236.5 125 81.6
unitig_746.g26864 Utricularia gibba HOM05D003702 ORTHO05D004653 5.2e-60 235.3 147 74.1
Peaxi162Scf00205g01127 Petunia axillaris HOM05D003702 ORTHO05D004653 1.2e-59 234.2 166 65.7
vmacro12220 Vaccinium macrocarpon HOM05D003702 ORTHO05D004653 1.5e-59 233.8 161 68.3
Os05g0554400 Oryza sativa ssp. japonica HOM05D003702 ORTHO05D004653 3.4e-59 232.6 125 81.6
AagrBONN_evm.TU.Sc2ySwM_117.3898 Anthoceros agrestis HOM05D003702 ORTHO05D004653 1.7e-58 230.3 126 77.0
Sabra10G0086900 Salix brachista HOM05D003702 ORTHO05D004653 2.2e-58 229.9 167 65.3
Sabra10G0088500 Salix brachista HOM05D003702 ORTHO05D004653 2.2e-58 229.9 167 65.3
Oeu048389.1 Olea europaea HOM05D003702 ORTHO05D004653 1.8e-57 226.9 113 85.8
Pp3c4_15740 Physcomitrium patens HOM05D003702 ORTHO05D004653 2.7e-56 223.0 126 73.8
CSS0004358 Camellia sinensis var. sinensis HOM05D003702 ORTHO05D004653 6.0e-56 221.9 114 86.8
Mapoly0057s0110 Marchantia polymorpha HOM05D003702 ORTHO05D004653 1.0e-55 221.1 125 75.2
Pp3c26_4170 Physcomitrium patens HOM05D003702 ORTHO05D004653 1.5e-54 217.2 125 73.6
Lsat_1_v5_gn_3_56601 Lactuca sativa HOM05D003702 ORTHO05D004653 4.0e-52 209.1 134 73.1
SalBow8G5575 Salvia bowleyana HOM05D003702 ORTHO05D004653 1.1e-44 184.5 126 70.6
Migut.L01016 Erythranthe guttata HOM05D003702 ORTHO05D004653 1.4e-44 184.1 126 69.0
vmacro10616 Vaccinium macrocarpon HOM05D003702 ORTHO05D004653 7.5e-43 178.3 95 82.1
CDE06G0787 Ceratophyllum demersum HOM05D003702 ORTHO05D004653 3.2e-41 172.9 81 90.1
MCO02G069 Micromonas commoda HOM05D003702 ORTHO05D004653 9.2e-41 171.4 126 60.3
HPP92_021847 Vanilla planifolia HOM05D003702 ORTHO05D004653 2.7e-40 169.9 130 66.9
SGA_v2.0_scaffold14G06919 Striga asiatica HOM05D003702 ORTHO05D004653 8.6e-39 164.9 85 85.9
SGA_v2.0_scaffold170G38819 Striga asiatica HOM05D003702 ORTHO05D004653 1.5e-38 164.1 100 76.0
Duzib251G0696 Durio zibethinus HOM05D003702 ORTHO05D004653 4.3e-38 162.5 81 84.0
ClCG05G022350 Citrullus lanatus HOM05D003702 ORTHO05D004653 2.9e-34 149.8 126 59.5
Aqoxy6G00508 Aquilegia oxysepala HOM05D003702 ORTHO05D004653 3.0e-31 139.8 61 100.0
Zm00001eb335270 Zea mays HOM05D003702 ORTHO05D004653 5.1e-31 139.0 84 70.2
Lsat_1_v5_gn_0_25341 Lactuca sativa HOM05D006132 ORTHO05D007305 1.1e-30 137.9 84 71.4
AUR62002771 Chenopodium quinoa HOM05D003702 ORTHO05D004653 9.6e-30 134.8 61 93.4
Os01g0683550 Oryza sativa ssp. japonica HOM05D003702 ORTHO05D004653 6.0e-24 115.5 67 71.6
Aqoxy7G02189 Aquilegia oxysepala HOM05D003702 ORTHO05D004653 2.5e-22 110.2 219 45.7
Zm00001eb371470 Zea mays HOM05D003702 ORTHO05D004653 2.5e-22 110.2 62 71.0
Aqoxy6G00509 Aquilegia oxysepala HOM05D003702 ORTHO05D004653 1.3e-18 97.8 45 97.8
Actinidia16697 Actinidia chinensis HOM05D003702 ORTHO05D004653 1.3e-15 87.8 111 49.5
SMO116G0260 Selaginella moellendorffii HOM05D003702 ORTHO05D004653 1.8e-15 87.4 37 91.9
Os01g0118300 Oryza sativa ssp. japonica HOM05D003702 ORTHO05D004653 1.1e-12 78.2 40 85.0
Cpa.g.sc65.87 Carica papaya HOM05D003702 ORTHO05D004653 1.8e-12 77.4 52 67.3
PRCOL_00004560 Prasinoderma coloniale HOM05D003702 ORTHO05D004653 4.5e-11 72.8 69 43.5
C03p53560 Brassica napus HOM05D003547 ORTHO05D042659 2.3e-07 60.5 80 46.2
BolC3t17616H Brassica oleracea HOM05D003547 ORTHO05D042659 2.3e-07 60.5 80 46.2
Zm00001eb294100 Zea mays HOM05D003702 ORTHO05D004653 4.3e-06 56.2 29 82.8


User provided reference genes

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