Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy7G02134 Aquilegia oxysepala HOM05D004076 ORTHO05D004606 0.0e+00 1176.4 606 100.0
Aqoxy7G02132 Aquilegia oxysepala HOM05D004076 ORTHO05D004606 7.4e-94 349.0 432 47.9
Aqoxy7G03601 Aquilegia oxysepala HOM05D004076 ORTHO05D004606 1.7e-93 347.8 460 47.2
TAR633G1822 Trochodendron aralioides HOM05D004076 ORTHO05D004606 1.6e-91 341.3 359 52.4
MBI08_g23493_MAGBIO Magnolia biondii HOM05D004076 ORTHO05D004606 4.7e-80 303.1 309 51.1
Dinv44195 Davidia involucrata HOM05D004076 ORTHO05D004606 1.4e-79 301.6 345 49.9
Nn1g09697 Nelumbo nucifera HOM05D004076 ORTHO05D004606 3.7e-77 293.5 382 45.5
GSVIVG01010749001 Vitis vinifera HOM05D004076 ORTHO05D004606 4.8e-77 293.1 329 50.2
Hma1.2p1_0639F.1_g194000 Hydrangea macrophylla HOM05D004076 ORTHO05D004606 6.3e-77 292.7 368 47.3
Cfa015154 Carpinus fangiana HOM05D004076 ORTHO05D004606 1.6e-75 288.1 334 47.3
Prupe.1G191700 Prunus persica HOM05D004076 ORTHO05D004606 3.8e-74 283.5 337 47.8
Oeu032957.2 Olea europaea HOM05D004076 ORTHO05D004606 2.5e-73 280.8 297 49.2
Atru.chr3.1528 Acer truncatum HOM05D004076 ORTHO05D004606 4.7e-72 276.6 336 47.6
QL10p048538 Quercus lobata HOM05D004076 ORTHO05D004606 4.7e-72 276.6 330 48.2
TWI63G0993 Tripterygium wilfordii HOM05D004076 ORTHO05D004606 6.1e-72 276.2 333 47.1
MD04G1007700 Malus domestica HOM05D004076 ORTHO05D004606 1.0e-71 275.4 333 46.5
Actinidia11304 Actinidia chinensis HOM05D004076 ORTHO05D004606 3.0e-71 273.9 310 49.7
Ca_20781_v3 Cicer arietinum L. HOM05D004076 ORTHO05D004606 4.0e-71 273.5 301 49.8
Actinidia39854 Actinidia chinensis HOM05D004076 ORTHO05D004606 8.8e-71 272.3 310 49.7
Potri.007G127800 Populus trichocarpa HOM05D004076 ORTHO05D004606 1.2e-70 271.9 348 48.0
CiPaw.01G101100 Carya illinoinensis HOM05D004076 ORTHO05D004606 7.5e-70 269.2 331 45.9
EL10Ac3g05923 Beta vulgaris HOM05D004076 ORTHO05D004606 2.8e-69 267.3 297 49.5
Sabra07G0104100 Salix brachista HOM05D004076 ORTHO05D004606 3.7e-69 266.9 342 47.4
Lj3A198G30 Lonicera japonica HOM05D004076 ORTHO05D004606 8.3e-69 265.8 372 45.4
ATR0686G221 Amborella trichopoda HOM05D004076 ORTHO05D004606 1.4e-68 265.0 302 44.0
Manes.04G041450 Manihot esculenta HOM05D004076 ORTHO05D004606 1.4e-68 265.0 353 44.2
FAN07G2191 Fragaria x ananassa HOM05D004076 ORTHO05D004606 1.8e-68 264.6 340 44.7
Peaxi162Scf00297g01124 Petunia axillaris HOM05D004076 ORTHO05D004606 1.8e-68 264.6 307 47.6
FvH4_4g10700 Fragaria vesca HOM05D004076 ORTHO05D004606 3.1e-68 263.8 340 45.0
PSO832G3772 Papaver somniferum HOM05D004076 ORTHO05D004606 3.1e-68 263.8 339 48.4
MSTRG.28249 Avicennia marina HOM05D004076 ORTHO05D004606 2.7e-67 260.8 300 48.7
Rhsim02G0076700 Rhododendron simsii HOM05D004076 ORTHO05D004606 3.5e-67 260.4 342 44.7
arahy.Tifrunner.gnm1.ann1.KU5ADZ Arachis hypogaea HOM05D004076 ORTHO05D004606 4.5e-67 260.0 436 37.6
Psat7g213720 Pisum sativum HOM05D004076 ORTHO05D004606 4.5e-67 260.0 304 46.7
Sabra17G0020100 Salix brachista HOM05D004076 ORTHO05D004606 4.5e-67 260.0 344 45.9
arahy.Tifrunner.gnm1.ann1.68X0LC Arachis hypogaea HOM05D004076 ORTHO05D004606 7.7e-67 259.2 435 37.5
Medtr4g067090 Medicago truncatula HOM05D004076 ORTHO05D004606 1.0e-66 258.8 308 46.4
PGR031G3172 Punica granatum HOM05D004076 ORTHO05D004606 1.7e-66 258.1 354 42.9
RcHm_v2.0_Chr4g0407011 Rosa chinensis HOM05D004076 ORTHO05D004606 1.7e-66 258.1 339 44.8
Eucgr.H00375 Eucalyptus grandis HOM05D004076 ORTHO05D004606 2.9e-66 257.3 345 44.3
Ciclev10020610m.g Citrus clementina HOM05D004076 ORTHO05D004606 1.1e-65 255.4 311 47.9
Lalb_Chr14g0372441 Lupinus albus HOM05D004076 ORTHO05D004606 1.1e-65 255.4 374 41.4
Medtr2g098830 Medicago truncatula HOM05D004076 ORTHO05D004606 1.1e-65 255.4 375 39.5
SGA_v2.0_scaffold24G10696 Striga asiatica HOM05D004076 ORTHO05D004606 1.1e-65 255.4 401 39.9
TPR.G34235 Trifolium pratense HOM05D004076 ORTHO05D004606 1.9e-65 254.6 372 40.6
Duzib212G0448 Durio zibethinus HOM05D004076 ORTHO05D004606 3.3e-65 253.8 312 47.1
AUR62002294 Chenopodium quinoa HOM05D004076 ORTHO05D004606 4.3e-65 253.4 332 45.5
Ciclev10020801m.g Citrus clementina HOM05D004076 ORTHO05D004606 7.3e-65 252.7 307 48.9
Sed0018268 Sechium edule HOM05D004076 ORTHO05D004606 1.2e-64 251.9 385 40.5
FAN17G1176 Fragaria x ananassa HOM05D004076 ORTHO05D004606 2.1e-64 251.1 321 44.5
Psat1g007120 Pisum sativum HOM05D004076 ORTHO05D004606 2.1e-64 251.1 375 39.5
CsaV3_6G003850 Cucumis sativus L. HOM05D004076 ORTHO05D004606 2.8e-64 250.8 380 41.1
Cc03_g11440 Coffea canephora HOM05D004076 ORTHO05D004606 4.7e-64 250.0 303 46.2
Lalb_Chr01g0003201 Lupinus albus HOM05D004076 ORTHO05D004606 4.7e-64 250.0 302 45.0
Ca_01262_v3 Cicer arietinum L. HOM05D004076 ORTHO05D004606 6.1e-64 249.6 307 46.3
Glyma.15G030500 Glycine max HOM05D004076 ORTHO05D004606 8.0e-64 249.2 307 44.6
MELO3C011646.2 Cucumis melo HOM05D004076 ORTHO05D004606 1.0e-63 248.8 307 45.9
Eucgr.G00183 Eucalyptus grandis HOM05D004076 ORTHO05D004606 1.4e-63 248.4 315 46.0
Lj3g0002927 Lotus japonicus HOM05D004076 ORTHO05D004606 1.4e-63 248.4 310 46.5
arahy.Tifrunner.gnm1.ann1.33ZKBH Arachis hypogaea HOM05D004076 ORTHO05D004606 1.2e-62 245.4 298 44.6
arahy.Tifrunner.gnm1.ann1.ZR8I8Y Arachis hypogaea HOM05D004076 ORTHO05D004606 1.2e-62 245.4 298 44.6
Nitab4.5_0000313g0050 Nicotiana tabacum HOM05D004076 ORTHO05D004606 1.2e-62 245.4 392 40.6
Sopen07g034480 Solanum pennellii HOM05D004076 ORTHO05D004606 1.2e-62 245.4 414 38.9
TPR.G35423 Trifolium pratense HOM05D004076 ORTHO05D004606 1.2e-62 245.4 330 41.5
Eucgr.G00179 Eucalyptus grandis HOM05D004076 ORTHO05D004606 9.8e-62 242.3 323 45.2
Thecc.04G186100 Theobroma cacao HOM05D004076 ORTHO05D004606 1.7e-61 241.5 470 36.4
SalBow5G1086 Salvia bowleyana HOM05D004076 ORTHO05D004606 1.1e-60 238.8 318 43.7
Thhalv10007042m.g Eutrema salsugineum HOM05D004076 ORTHO05D004606 1.4e-60 238.4 312 42.0
Peaxi162Scf00297g01121 Petunia axillaris HOM05D004076 ORTHO05D004606 1.8e-60 238.0 307 46.3
Haze_01517 Corylus avellana HOM05D004076 ORTHO05D004606 2.4e-60 237.7 288 47.9
THA.LOC104826195 Tarenaya hassleriana HOM05D004076 ORTHO05D004606 4.1e-60 236.9 353 37.1
BcaC07g42099 Brassica carinata HOM05D004076 ORTHO05D004606 5.4e-60 236.5 327 41.9
CANSAT78G1401 Cannabis sativa HOM05D004076 ORTHO05D004606 1.6e-59 235.0 299 46.5
Migut.B01848 Erythranthe guttata HOM05D004076 ORTHO05D004606 5.9e-59 233.0 359 40.7
SalBow3G0974 Salvia bowleyana HOM05D004076 ORTHO05D004606 5.9e-59 233.0 300 42.3
Phvul.011G055000 Phaseolus vulgaris HOM05D004076 ORTHO05D004606 1.7e-58 231.5 334 40.4
VMungo1127G1790 Vigna mungo HOM05D004076 ORTHO05D004606 6.6e-58 229.6 334 41.3
A09p67230 Brassica napus HOM05D004076 ORTHO05D004606 8.6e-58 229.2 298 43.3
Aa31LG1G8350 Aethionema arabicum HOM05D004076 ORTHO05D004606 2.5e-57 227.6 355 38.6
Lsat_1_v5_gn_3_110821 Lactuca sativa HOM05D004076 ORTHO05D004606 2.5e-57 227.6 377 39.5
Sopen03g040670 Solanum pennellii HOM05D004076 ORTHO05D004606 5.6e-57 226.5 303 43.9
Solyc03g121850.3 Solanum lycopersicum HOM05D004076 ORTHO05D004606 1.2e-56 225.3 301 43.5
BraA09t42056Z Brassica rapa HOM05D004076 ORTHO05D004606 4.7e-56 223.4 298 42.3
CARHR005480 Cardamine hirsuta HOM05D004076 ORTHO05D004606 1.4e-55 221.9 300 41.3
BolC8t52680H Brassica oleracea HOM05D004076 ORTHO05D004606 1.8e-55 221.5 306 40.5
AL1G15900 Arabidopsis lyrata HOM05D004076 ORTHO05D004606 2.3e-55 221.1 300 41.3
Gohir.A09G209900 Gossypium hirsutum HOM05D004076 ORTHO05D004606 3.1e-55 220.7 339 41.9
ECA240G0221 Erigeron canadensis HOM05D004076 ORTHO05D004606 6.8e-55 219.5 357 40.9
C08p51520 Brassica napus HOM05D004076 ORTHO05D004606 1.2e-54 218.8 306 39.9
Gorai.006G227200 Gossypium raimondii HOM05D004076 ORTHO05D004606 1.2e-54 218.8 339 41.6
Medtr2g098710 Medicago truncatula HOM05D004076 ORTHO05D004606 1.2e-54 218.8 304 41.4
AT1G05950 Arabidopsis thaliana HOM05D004076 ORTHO05D004606 2.0e-54 218.0 364 38.2
Medtr2g098730 Medicago truncatula HOM05D004076 ORTHO05D004606 2.0e-54 218.0 306 41.5
Gohir.D09G203332 Gossypium hirsutum HOM05D004076 ORTHO05D004606 4.4e-54 216.9 320 42.8
Lj6A56T29 Lonicera japonica HOM05D004076 ORTHO05D004606 4.4e-54 216.9 303 41.6
Eucgr.G00184 Eucalyptus grandis HOM05D004076 ORTHO05D004606 5.8e-54 216.5 291 45.4
Carub.0001s0531 Capsella rubella HOM05D004076 ORTHO05D004606 1.3e-53 215.3 302 41.7
DCAR_027539 Daucus carota HOM05D004076 ORTHO05D004606 1.7e-53 214.9 314 41.1
FAN12G1510 Fragaria x ananassa HOM05D004076 ORTHO05D004606 3.7e-53 213.8 271 45.4
DCAR_031879 Daucus carota HOM05D004076 ORTHO05D004606 8.3e-53 212.6 301 41.9
Medtr2g098720 Medicago truncatula HOM05D004076 ORTHO05D004606 8.3e-53 212.6 306 41.2
FAN12G0055 Fragaria x ananassa HOM05D004076 ORTHO05D004606 3.2e-52 210.7 271 45.0
Lj3g0000298 Lotus japonicus HOM05D004076 ORTHO05D004606 1.6e-51 208.4 353 37.7
Zm00001eb318340 Zea mays HOM05D004076 ORTHO05D004606 2.0e-51 208.0 370 36.5
ClCG08G004480 Citrullus lanatus HOM05D004076 ORTHO05D004606 1.0e-50 205.7 502 31.9
Ciclev10023338m.g Citrus clementina HOM05D004076 ORTHO05D004606 1.3e-50 205.3 263 47.1
HanXRQChr03g0090111 Helianthus annuus HOM05D004076 ORTHO05D004606 1.7e-50 204.9 304 43.8
Eucgr.G00188 Eucalyptus grandis HOM05D004076 ORTHO05D004606 6.6e-50 203.0 272 44.9
Migut.N01559 Erythranthe guttata HOM05D004076 ORTHO05D004606 3.3e-49 200.7 304 41.4
Nitab4.5_0009641g0050 Nicotiana tabacum HOM05D004076 ORTHO05D004606 1.2e-48 198.7 287 42.9
Nitab4.5_0005003g0040 Nicotiana tabacum HOM05D004076 ORTHO05D004606 1.6e-48 198.4 287 42.5
COL.COLO4_33468 Corchorus olitorius HOM05D004076 ORTHO05D004606 1.8e-47 194.9 379 36.7
Nitab4.5_0002475g0040 Nicotiana tabacum HOM05D004076 ORTHO05D004606 2.0e-46 191.4 344 37.8
Medtr0002s1280 Medicago truncatula HOM05D004076 ORTHO05D004606 8.3e-45 186.0 369 34.4
PGSC0003DMG400002575 Solanum tuberosum HOM05D004076 ORTHO05D004606 1.9e-44 184.9 263 42.6
Glyma.12G053033 Glycine max HOM05D004076 ORTHO05D004606 1.0e-42 179.1 278 39.9
Sp1g04770 Schrenkiella parvula HOM05D004076 ORTHO05D004606 1.5e-41 175.3 230 42.2
Sc11g0003780 Simmondsia chinensis HOM05D004076 ORTHO05D004606 1.9e-41 174.9 268 41.0
Eucgr.G00171 Eucalyptus grandis HOM05D004076 ORTHO05D004606 3.4e-38 164.1 220 44.5
CDE08G1584 Ceratophyllum demersum HOM05D004076 ORTHO05D004606 6.6e-34 149.8 303 33.3
Medtr2g098770 Medicago truncatula HOM05D004076 ORTHO05D004606 5.2e-31 140.2 268 34.3
Ciclev10024150m.g Citrus clementina HOM05D004076 ORTHO05D004606 4.4e-30 137.1 183 45.4
Ciclev10024444m.g Citrus clementina HOM05D004076 ORTHO05D004606 4.4e-30 137.1 183 45.4
Cpa.g.sc9.266 Carica papaya HOM05D004076 ORTHO05D004606 2.9e-29 134.4 175 45.1
SEGI_36759 Sequoiadendron giganteum HOM05D004076 ORTHO05D004606 7.8e-27 126.3 226 38.1
Sed0002856 Sechium edule HOM05D004076 ORTHO05D004606 3.9e-26 124.0 225 38.7
Os09g0514500 Oryza sativa ssp. japonica HOM05D004076 ORTHO05D004606 6.9e-23 113.2 266 33.1
Lj3g0024562 Lotus japonicus HOM05D004076 ORTHO05D004606 3.2e-20 104.4 151 38.4
Glyma.13G343800 Glycine max HOM05D004076 ORTHO05D004606 1.0e-18 99.4 121 44.6
COL.COLO4_20907 Corchorus olitorius HOM05D004076 ORTHO05D004606 4.3e-17 94.0 142 39.4
Lj8A15T44 Lonicera japonica HOM05D004076 ORTHO05D004606 9.0e-15 86.3 114 40.4
Lj3g0014411 Lotus japonicus HOM05D004076 ORTHO05D004606 4.9e-13 80.5 179 30.2
SHI23539 Sapria himalayana HOM05D004076 ORTHO05D004606 1.5e-09 68.9 77 44.2
Glyma.11G128400 Glycine max HOM05D004076 ORTHO05D004606 2.5e-09 68.2 85 40.0
SEGI_13457 Sequoiadendron giganteum HOM05D035915 ORTHO05D004606 1.3e-08 65.9 82 41.5
AUR62015396 Chenopodium quinoa HOM05D004076 ORTHO05D004606 2.8e-08 64.7 75 48.0


User provided reference genes

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