Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy7G02110 Aquilegia oxysepala HOM05D000361 ORTHO05D004243 1.6e-18 95.1 50 100.0
Aqoxy3G02976 Aquilegia oxysepala HOM05D000361 ORTHO05D004243 4.3e-16 87.0 46 95.7
Aqoxy328s001 Aquilegia oxysepala HOM05D000361 ORTHO05D004243 2.5e-11 71.2 49 75.5
Aqoxy3G01218 Aquilegia oxysepala HOM05D000361 ORTHO05D004243 2.5e-11 71.2 49 75.5
Nn4g25601 Nelumbo nucifera HOM05D000361 ORTHO05D004243 4.2e-11 70.5 49 77.6
arahy.Tifrunner.gnm1.ann1.66RZQ8 Arachis hypogaea HOM05D000361 ORTHO05D004243 1.2e-10 68.9 47 74.5
arahy.Tifrunner.gnm1.ann1.KULZ0F Arachis hypogaea HOM05D000361 ORTHO05D004243 1.2e-10 68.9 47 74.5
DCAR_012354 Daucus carota HOM05D000361 ORTHO05D004243 3.6e-10 67.4 48 68.8
TAR633G1939 Trochodendron aralioides HOM05D000361 ORTHO05D004243 4.7e-10 67.0 49 75.5
Hma1.2p1_0486F.1_g163260 Hydrangea macrophylla HOM05D000361 ORTHO05D004243 6.1e-10 66.6 46 76.1
CSS0012467 Camellia sinensis var. sinensis HOM05D000361 ORTHO05D004243 1.0e-09 65.9 48 72.9
BcaB01g02087 Brassica carinata HOM05D000361 ORTHO05D004243 1.8e-09 65.1 47 72.3
BcaC04g24028 Brassica carinata HOM05D000361 ORTHO05D004243 3.0e-09 64.3 46 76.1
A09p01480 Brassica napus HOM05D000361 ORTHO05D004243 3.0e-09 64.3 46 76.1
C09p01600 Brassica napus HOM05D000361 ORTHO05D004243 3.0e-09 64.3 46 76.1
BolC9t53093H Brassica oleracea HOM05D000361 ORTHO05D004243 3.0e-09 64.3 46 76.1
BraA09t35809Z Brassica rapa HOM05D000361 ORTHO05D004243 3.0e-09 64.3 46 76.1
Carub.0006s3520 Capsella rubella HOM05D000361 ORTHO05D004243 3.0e-09 64.3 46 76.1
ClCG07G000710 Citrullus lanatus HOM05D000361 ORTHO05D004243 3.0e-09 64.3 47 72.3
TPR.G4118 Trifolium pratense HOM05D000361 ORTHO05D004243 3.0e-09 64.3 47 66.0
ClCG10G006350 Citrullus lanatus HOM05D000361 ORTHO05D004243 3.9e-09 63.9 47 72.3
Sed0012026 Sechium edule HOM05D000361 ORTHO05D004243 3.9e-09 63.9 47 72.3
TWI36G0074 Tripterygium wilfordii HOM05D000361 ORTHO05D004243 3.9e-09 63.9 48 70.8
Actinidia25847 Actinidia chinensis HOM05D000361 ORTHO05D004243 5.1e-09 63.5 48 70.8
Ah.10g031040 Amaranthus hybridus HOM05D000361 ORTHO05D004243 5.1e-09 63.5 47 66.0
MELO3C023707.2 Cucumis melo HOM05D000361 ORTHO05D004243 5.1e-09 63.5 47 72.3
CsaV3_7G025080 Cucumis sativus L. HOM05D000361 ORTHO05D004243 5.1e-09 63.5 47 72.3
Lj1g0012423 Lotus japonicus HOM05D000361 ORTHO05D004243 8.8e-09 62.8 47 68.1
PSO017G2448 Papaver somniferum HOM05D000361 ORTHO05D004243 1.1e-08 62.4 46 69.6
PSO063G6259 Papaver somniferum HOM05D000361 ORTHO05D004243 1.1e-08 62.4 46 69.6
Aa31LG5G1680 Aethionema arabicum HOM05D000361 ORTHO05D004243 1.5e-08 62.0 46 73.9
Lj5g0013347 Lotus japonicus HOM05D000361 ORTHO05D004243 1.5e-08 62.0 46 69.6
Ciclev10010795m.g Citrus clementina HOM05D000361 ORTHO05D004243 2.0e-08 61.6 46 69.6
FvH4_5g39210 Fragaria vesca HOM05D000361 ORTHO05D004243 2.0e-08 61.6 46 71.7
FAN04G1824 Fragaria x ananassa HOM05D000361 ORTHO05D004243 2.0e-08 61.6 46 71.7
FAN08G2818 Fragaria x ananassa HOM05D000361 ORTHO05D004243 2.0e-08 61.6 46 71.7
AL6G51220 Arabidopsis lyrata HOM05D000361 ORTHO05D004243 2.6e-08 61.2 46 73.9
AT4G02030 Arabidopsis thaliana HOM05D000361 ORTHO05D004243 2.6e-08 61.2 46 73.9
CSS0010179 Camellia sinensis var. sinensis HOM05D000361 ORTHO05D004243 2.6e-08 61.2 48 68.8
CARHR249640 Cardamine hirsuta HOM05D000361 ORTHO05D004243 2.6e-08 61.2 46 73.9
Thhalv10028443m.g Eutrema salsugineum HOM05D000361 ORTHO05D004243 2.6e-08 61.2 46 73.9
Medtr1g087100 Medicago truncatula HOM05D000361 ORTHO05D004243 2.6e-08 61.2 46 67.4
RcHm_v2.0_Chr7g0241471 Rosa chinensis HOM05D000361 ORTHO05D004243 2.6e-08 61.2 46 71.7
Dinv10097 Davidia involucrata HOM05D000361 ORTHO05D004243 3.3e-08 60.8 49 67.3
Psat3g020160 Pisum sativum HOM05D000361 ORTHO05D004243 3.3e-08 60.8 47 63.8
Psat6g161800 Pisum sativum HOM05D000361 ORTHO05D004243 3.3e-08 60.8 46 67.4
PGR119G2139 Punica granatum HOM05D000361 ORTHO05D004243 3.3e-08 60.8 46 69.6
Actinidia20995 Actinidia chinensis HOM05D000361 ORTHO05D004243 4.4e-08 60.5 48 66.7
MD03G1295300 Malus domestica HOM05D000361 ORTHO05D004243 4.4e-08 60.5 46 71.7
Prupe.5G007800 Prunus persica HOM05D000361 ORTHO05D004243 4.4e-08 60.5 46 71.7
Hund09630 Selenicereus undatus HOM05D000361 ORTHO05D004243 4.4e-08 60.5 47 68.1
CANSAT25G2078 Cannabis sativa HOM05D000361 ORTHO05D004243 5.7e-08 60.1 46 69.6
Sp6g01910 Schrenkiella parvula HOM05D000361 ORTHO05D004243 5.7e-08 60.1 46 71.7
Thecc.01G313200 Theobroma cacao HOM05D000361 ORTHO05D004243 5.7e-08 60.1 46 69.6
EL10As5g23529 Beta vulgaris HOM05D000361 ORTHO05D004243 7.4e-08 59.7 46 67.4
Gohir.A11G109900 Gossypium hirsutum HOM05D000361 ORTHO05D004243 7.4e-08 59.7 46 69.6
Gohir.A12G125100 Gossypium hirsutum HOM05D000361 ORTHO05D004243 7.4e-08 59.7 46 69.6
Gorai.007G122900 Gossypium raimondii HOM05D000361 ORTHO05D004243 7.4e-08 59.7 46 69.6
Migut.N00925 Erythranthe guttata HOM05D000361 ORTHO05D004243 9.7e-08 59.3 48 64.6
SGA_v2.0_scaffold36G14324 Striga asiatica HOM05D000361 ORTHO05D004243 9.7e-08 59.3 48 64.6
THA.LOC104801306 Tarenaya hassleriana HOM05D000361 ORTHO05D004243 9.7e-08 59.3 46 69.6
CSS0030911 Camellia sinensis var. sinensis HOM05D000361 ORTHO05D004243 1.3e-07 58.9 48 66.7
Ca_10285_v3 Cicer arietinum L. HOM05D000361 ORTHO05D004243 1.3e-07 58.9 46 65.2
FAN18G4464 Fragaria x ananassa HOM05D000361 ORTHO05D004243 1.3e-07 58.9 46 69.6
Manes.01G227700 Manihot esculenta HOM05D000361 ORTHO05D004243 1.3e-07 58.9 46 67.4
Rhsim01G0290600 Rhododendron simsii HOM05D000361 ORTHO05D004243 1.3e-07 58.9 45 68.9
Sc05g0000420 Simmondsia chinensis HOM05D000361 ORTHO05D004243 1.3e-07 58.9 46 67.4
AUR62011807 Chenopodium quinoa HOM05D000361 ORTHO05D004243 1.7e-07 58.5 46 65.2
AUR62024653 Chenopodium quinoa HOM05D000361 ORTHO05D004243 1.7e-07 58.5 46 65.2
Ciclev10018936m.g Citrus clementina HOM05D000361 ORTHO05D004243 1.7e-07 58.5 46 69.6
Eucgr.H00929 Eucalyptus grandis HOM05D000361 ORTHO05D004243 1.7e-07 58.5 46 67.4
Gohir.D12G128800 Gossypium hirsutum HOM05D000361 ORTHO05D004243 1.7e-07 58.5 46 67.4
Solyc01g079490.2 Solanum lycopersicum HOM05D000361 ORTHO05D004243 1.7e-07 58.5 46 63.0
Sopen01g031260 Solanum pennellii HOM05D000361 ORTHO05D004243 1.7e-07 58.5 46 63.0
THA.LOC104799236 Tarenaya hassleriana HOM05D000361 ORTHO05D004243 1.7e-07 58.5 46 67.4
MSTRG.21685 Avicennia marina HOM05D000361 ORTHO05D004243 2.2e-07 58.2 48 62.5
Duzib138G1700 Durio zibethinus HOM05D000361 ORTHO05D004243 2.2e-07 58.2 46 67.4
Gorai.008G139800 Gossypium raimondii HOM05D000361 ORTHO05D004243 2.2e-07 58.2 46 67.4
TPR.G19758 Trifolium pratense HOM05D000361 ORTHO05D004243 2.2e-07 58.2 46 63.0
Lalb_Chr15g0078161 Lupinus albus HOM05D000361 ORTHO05D004243 2.8e-07 57.8 47 61.7
VMungo0720G0598 Vigna mungo HOM05D000361 ORTHO05D004243 2.8e-07 57.8 46 60.9
CAN.G1280.26 Capsicum annuum HOM05D000361 ORTHO05D004243 3.7e-07 57.4 48 62.5
Cc01_g21390 Coffea canephora HOM05D000361 ORTHO05D004243 3.7e-07 57.4 48 62.5
Glyma.02G012800 Glycine max HOM05D000361 ORTHO05D004243 3.7e-07 57.4 46 63.0
Peaxi162Scf00058g02630 Petunia axillaris HOM05D000361 ORTHO05D004243 3.7e-07 57.4 48 62.5
Solyc06g009650.3 Solanum lycopersicum HOM05D000361 ORTHO05D004243 3.7e-07 57.4 48 62.5
Sopen06g004290 Solanum pennellii HOM05D000361 ORTHO05D004243 3.7e-07 57.4 48 62.5
Phvul.007G214400 Phaseolus vulgaris HOM05D000361 ORTHO05D004243 4.8e-07 57.0 46 60.9
Potri.002G196300 Populus trichocarpa HOM05D000361 ORTHO05D004243 4.8e-07 57.0 46 67.4
Sabra02G0160700 Salix brachista HOM05D000361 ORTHO05D004243 4.8e-07 57.0 46 67.4
vmacro15111 Vaccinium macrocarpon HOM05D000361 ORTHO05D004243 4.8e-07 57.0 45 66.7
CAN.G777.12 Capsicum annuum HOM05D000361 ORTHO05D004243 6.3e-07 56.6 46 63.0
CDE11G0331 Ceratophyllum demersum HOM05D000361 ORTHO05D004243 6.3e-07 56.6 45 64.4
Ca_09209_v3 Cicer arietinum L. HOM05D000361 ORTHO05D004243 6.3e-07 56.6 47 59.6
Glyma.10G013400 Glycine max HOM05D000361 ORTHO05D004243 6.3e-07 56.6 46 60.9
Lalb_Chr06g0166851 Lupinus albus HOM05D000361 ORTHO05D004243 6.3e-07 56.6 46 60.9
Manes.05G003200 Manihot esculenta HOM05D000361 ORTHO05D004243 6.3e-07 56.6 46 63.0
QL12p019966 Quercus lobata HOM05D000361 ORTHO05D004243 6.3e-07 56.6 46 65.2
SEGI_20894 Sequoiadendron giganteum HOM05D000361 ORTHO05D004243 6.3e-07 56.6 46 65.2
arahy.Tifrunner.gnm1.ann1.G7NAMC Arachis hypogaea HOM05D000361 ORTHO05D004243 8.2e-07 56.2 46 63.0
arahy.Tifrunner.gnm1.ann1.N0EKR1 Arachis hypogaea HOM05D000361 ORTHO05D004243 8.2e-07 56.2 46 63.0
Nitab4.5_0000363g0270 Nicotiana tabacum HOM05D000361 ORTHO05D004243 8.2e-07 56.2 48 60.4
Nitab4.5_0006144g0010 Nicotiana tabacum HOM05D000361 ORTHO05D004243 8.2e-07 56.2 48 60.4
Os03g0737800 Oryza sativa ssp. japonica HOM05D000361 ORTHO05D004243 8.2e-07 56.2 45 66.7
SalBow2G3626 Salvia bowleyana HOM05D000361 ORTHO05D004243 8.2e-07 56.2 46 63.0
VMungo1383G3239 Vigna mungo HOM05D000361 ORTHO05D004243 8.2e-07 56.2 46 65.2
Cfa005802 Carpinus fangiana HOM05D000361 ORTHO05D005006 1.1e-06 55.8 46 63.0
Haze_05039 Corylus avellana HOM05D000361 ORTHO05D004243 1.1e-06 55.8 46 63.0
Zm00001eb215280 Zea mays HOM05D000361 ORTHO05D004243 1.4e-06 55.5 45 64.4
CiPaw.07G117400 Carya illinoinensis HOM05D000361 ORTHO05D004243 2.4e-06 54.7 46 60.9
Oeu008471.2 Olea europaea HOM05D000361 ORTHO05D004243 2.4e-06 54.7 46 63.0
Phvul.001G212700 Phaseolus vulgaris HOM05D000361 ORTHO05D004243 2.4e-06 54.7 48 60.4
ECA236G0422 Erigeron canadensis HOM05D000361 ORTHO05D005006 3.1e-06 54.3 47 59.6
Peaxi162Scf00691g00222 Petunia axillaris HOM05D000361 ORTHO05D004243 3.1e-06 54.3 48 58.3
GSVIVG01028119001 Vitis vinifera HOM05D000361 ORTHO05D004243 7.0e-06 53.1 49 59.2
HanXRQChr15g0464131 Helianthus annuus HOM05D000361 ORTHO05D004243 9.1e-06 52.8 47 57.4


User provided reference genes

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