Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy7G02096 Aquilegia oxysepala HOM05D004174 ORTHO05D004624 3.1e-259 897.9 438 100.0
Dinv36548 Davidia involucrata HOM05D004174 ORTHO05D004624 2.4e-182 642.5 405 76.5
Nn8g39387 Nelumbo nucifera HOM05D004174 ORTHO05D004624 3.1e-182 642.1 405 76.3
Hma1.2p1_0665F.1_g199150 Hydrangea macrophylla HOM05D004174 ORTHO05D004624 1.4e-179 633.3 445 71.7
CiPaw.03G241700 Carya illinoinensis HOM05D004174 ORTHO05D004624 1.9e-179 632.9 442 73.5
TAR383G0558 Trochodendron aralioides HOM05D004174 ORTHO05D004624 5.4e-179 631.3 428 75.0
Cfa003346 Carpinus fangiana HOM05D004174 ORTHO05D004624 1.6e-178 629.8 440 72.7
Haze_25614 Corylus avellana HOM05D004174 ORTHO05D004624 6.0e-178 627.9 440 73.0
TWI34G0924 Tripterygium wilfordii HOM05D004174 ORTHO05D004624 3.9e-177 625.2 438 72.1
Prupe.7G239600 Prunus persica HOM05D004174 ORTHO05D004624 1.5e-176 623.2 440 71.1
Gohir.D13G204700 Gossypium hirsutum HOM05D004174 ORTHO05D004624 2.5e-176 622.5 452 71.0
Gorai.013G233600 Gossypium raimondii HOM05D004174 ORTHO05D004624 1.6e-175 619.8 452 70.6
Eucgr.C04181 Eucalyptus grandis HOM05D004174 ORTHO05D004624 2.8e-175 619.0 406 73.4
Manes.06G050000 Manihot esculenta HOM05D004174 ORTHO05D004624 3.6e-175 618.6 415 73.0
Actinidia26403 Actinidia chinensis HOM05D004174 ORTHO05D004624 1.1e-174 617.1 438 70.8
RcHm_v2.0_Chr2g0089131 Rosa chinensis HOM05D004174 ORTHO05D004624 1.4e-174 616.7 432 72.2
Gohir.A13G199200 Gossypium hirsutum HOM05D004174 ORTHO05D004624 4.0e-174 615.1 441 70.7
FAN23G0992 Fragaria x ananassa HOM05D004174 ORTHO05D004624 5.3e-174 614.8 407 74.4
FAN19G0954 Fragaria x ananassa HOM05D004174 ORTHO05D004624 9.0e-174 614.0 441 71.4
FAN28G1355 Fragaria x ananassa HOM05D004174 ORTHO05D004624 1.2e-173 613.6 440 70.9
MD02G1035600 Malus domestica HOM05D004174 ORTHO05D004624 1.5e-173 613.2 445 69.9
Hund09144 Selenicereus undatus HOM05D004174 ORTHO05D004624 1.5e-173 613.2 434 70.0
FvH4_1g03600 Fragaria vesca HOM05D004174 ORTHO05D004624 2.0e-173 612.8 441 71.2
Atru.chr7.1197 Acer truncatum HOM05D004174 ORTHO05D004624 3.4e-173 612.1 444 69.8
Actinidia07434 Actinidia chinensis HOM05D004174 ORTHO05D004624 3.4e-173 612.1 439 70.4
MD00G1107300 Malus domestica HOM05D004174 ORTHO05D004624 4.4e-173 611.7 437 70.0
Potri.006G154200 Populus trichocarpa HOM05D004174 ORTHO05D004624 4.4e-173 611.7 407 74.0
QL02p087765 Quercus lobata HOM05D004174 ORTHO05D004624 1.3e-172 610.1 407 73.7
Manes.14G130500 Manihot esculenta HOM05D004174 ORTHO05D004624 2.2e-172 609.4 434 71.2
Potri.018G070400 Populus trichocarpa HOM05D004174 ORTHO05D004624 1.1e-171 607.1 434 69.4
TWI32G1270 Tripterygium wilfordii HOM05D004174 ORTHO05D004624 7.1e-171 604.4 436 69.7
THA.LOC104811038 Tarenaya hassleriana HOM05D004174 ORTHO05D004624 9.3e-171 604.0 435 67.6
Thecc.09G123000 Theobroma cacao HOM05D004174 ORTHO05D004624 1.2e-170 603.6 439 71.1
vmacro06177 Vaccinium macrocarpon HOM05D004174 ORTHO05D004624 1.6e-170 603.2 410 72.2
Cc06_g08790 Coffea canephora HOM05D004174 ORTHO05D004624 1.7e-169 599.7 393 72.8
CsaV3_2G002690 Cucumis sativus L. HOM05D004174 ORTHO05D004624 1.7e-169 599.7 435 69.7
MSTRG.19607 Avicennia marina HOM05D004174 ORTHO05D004624 2.3e-169 599.4 436 68.6
Aa31LG8G2170 Aethionema arabicum HOM05D004174 ORTHO05D004624 3.0e-169 599.0 440 68.2
Ciclev10008313m.g Citrus clementina HOM05D004174 ORTHO05D004624 3.9e-169 598.6 430 68.8
FAN26G3217 Fragaria x ananassa HOM05D004174 ORTHO05D004624 5.1e-169 598.2 440 69.8
PGSC0003DMG400024321 Solanum tuberosum HOM05D004174 ORTHO05D004624 5.1e-169 598.2 412 71.6
COL.COLO4_05761 Corchorus olitorius HOM05D004174 ORTHO05D004624 8.7e-169 597.4 410 72.2
EL10Ac8g18616 Beta vulgaris HOM05D004174 ORTHO05D004624 1.1e-168 597.0 412 71.4
Sopen06g031500 Solanum pennellii HOM05D004174 ORTHO05D004624 1.5e-168 596.7 414 71.3
CANSAT11G0280 Cannabis sativa HOM05D004174 ORTHO05D004624 2.5e-168 595.9 447 68.5
ClCG11G002850 Citrullus lanatus HOM05D004174 ORTHO05D004624 2.5e-168 595.9 409 71.4
MELO3C004525.2 Cucumis melo HOM05D004174 ORTHO05D004624 2.5e-168 595.9 388 74.2
Oeu058056.1 Olea europaea HOM05D004174 ORTHO05D004624 7.3e-168 594.3 405 70.9
Peaxi162Scf02490g00007 Petunia axillaris HOM05D004174 ORTHO05D004624 7.3e-168 594.3 445 68.1
Thhalv10013566m.g Eutrema salsugineum HOM05D004174 ORTHO05D004624 9.6e-168 594.0 421 69.8
CARHR192760 Cardamine hirsuta HOM05D004174 ORTHO05D004624 3.6e-167 592.0 436 68.1
AL6G31620 Arabidopsis lyrata HOM05D004174 ORTHO05D004624 6.2e-167 591.3 424 69.3
Solyc06g075080.4 Solanum lycopersicum HOM05D004174 ORTHO05D004624 6.2e-167 591.3 393 72.8
THA.LOC104799651 Tarenaya hassleriana HOM05D004174 ORTHO05D004624 6.2e-167 591.3 411 68.4
PSO170G6838 Papaver somniferum HOM05D004174 ORTHO05D004624 8.1e-167 590.9 422 72.3
Sed0019119 Sechium edule HOM05D004174 ORTHO05D004624 1.1e-166 590.5 429 68.8
Duzib150G0384 Durio zibethinus HOM05D004174 ORTHO05D004624 1.4e-166 590.1 403 72.0
MBI04_g24208_MAGBIO Magnolia biondii HOM05D004174 ORTHO05D004624 1.4e-166 590.1 415 71.8
AT5G20070 Arabidopsis thaliana HOM05D004174 ORTHO05D004624 4.0e-166 588.6 422 69.9
Carub.0006s1845 Capsella rubella HOM05D004174 ORTHO05D004624 4.0e-166 588.6 417 70.5
BcaC03g13730 Brassica carinata HOM05D004174 ORTHO05D004624 5.8e-165 584.7 409 70.2
PGR102G0881 Punica granatum HOM05D004174 ORTHO05D004624 5.8e-165 584.7 448 66.3
PSO455G0049 Papaver somniferum HOM05D004174 ORTHO05D004624 7.6e-165 584.3 426 72.1
Duzib187G0531 Durio zibethinus HOM05D004174 ORTHO05D004624 1.3e-164 583.6 427 69.3
CSS0035220 Camellia sinensis var. sinensis HOM05D004174 ORTHO05D004624 1.7e-164 583.2 394 73.9
Sp6g24340 Schrenkiella parvula HOM05D004174 ORTHO05D004624 4.9e-164 581.6 425 68.5
Medtr2g054680 Medicago truncatula HOM05D004174 ORTHO05D004624 6.4e-164 581.3 437 68.0
Psat1g025760 Pisum sativum HOM05D004174 ORTHO05D004624 6.4e-164 581.3 439 68.3
BcaB01g04811 Brassica carinata HOM05D004174 ORTHO05D004624 8.4e-164 580.9 428 68.0
Sc18g0000710 Simmondsia chinensis HOM05D004174 ORTHO05D004624 1.1e-163 580.5 384 72.4
A02p06020 Brassica napus HOM05D004174 ORTHO05D004624 5.4e-163 578.2 409 69.9
BraA02t05553Z Brassica rapa HOM05D004174 ORTHO05D004624 5.4e-163 578.2 409 69.9
TPR.G31095 Trifolium pratense HOM05D004174 ORTHO05D004624 7.1e-163 577.8 428 69.2
Ca_03159_v3 Cicer arietinum L. HOM05D004174 ORTHO05D004624 9.3e-163 577.4 451 66.7
Sabra18G0061500 Salix brachista HOM05D004174 ORTHO05D004624 2.1e-162 576.2 429 68.3
Nitab4.5_0006698g0010 Nicotiana tabacum HOM05D004174 ORTHO05D004624 4.6e-162 575.1 442 67.4
CAN.G1966.1 Capsicum annuum HOM05D004174 ORTHO05D004624 6.0e-162 574.7 416 68.3
DCAR_017828 Daucus carota HOM05D004174 ORTHO05D004624 7.9e-162 574.3 408 68.6
SalBow3G2402 Salvia bowleyana HOM05D004174 ORTHO05D004624 7.9e-162 574.3 435 66.7
A03p09800 Brassica napus HOM05D004174 ORTHO05D004624 2.3e-161 572.8 430 67.2
BraA03t10295Z Brassica rapa HOM05D004174 ORTHO05D004624 2.3e-161 572.8 430 67.2
Lsat_1_v5_gn_8_58900 Lactuca sativa HOM05D004174 ORTHO05D004624 2.3e-161 572.8 392 70.9
BolC3t13612H Brassica oleracea HOM05D004174 ORTHO05D004624 3.0e-161 572.4 439 66.7
SGA_v2.0_scaffold229G43324 Striga asiatica HOM05D004174 ORTHO05D004624 3.9e-161 572.0 425 66.6
C03p11380 Brassica napus HOM05D004174 ORTHO05D004624 1.1e-160 570.5 433 67.2
BcaB05g22875 Brassica carinata HOM05D004174 ORTHO05D004624 1.5e-160 570.1 394 70.3
COL.COLO4_17917 Corchorus olitorius HOM05D004174 ORTHO05D004624 1.5e-160 570.1 397 72.5
VMungo1309G2067 Vigna mungo HOM05D004174 ORTHO05D004624 1.9e-160 569.7 440 66.6
Phvul.009G197200 Phaseolus vulgaris HOM05D004174 ORTHO05D004624 3.3e-160 568.9 443 66.6
HanXRQChr12g0368841 Helianthus annuus HOM05D004174 ORTHO05D004624 2.8e-159 565.8 417 67.6
BNapus_Darmor_BZH_scaffold_38p01820 Brassica napus HOM05D004174 ORTHO05D004624 8.1e-159 564.3 409 68.7
Nitab4.5_0000106g0230 Nicotiana tabacum HOM05D004174 ORTHO05D004624 8.1e-159 564.3 420 68.1
Migut.J01169 Erythranthe guttata HOM05D004174 ORTHO05D004624 6.9e-158 561.2 414 66.9
Lalb_Chr23g0275331 Lupinus albus HOM05D004174 ORTHO05D004624 9.0e-158 560.8 441 65.1
HanXRQChr06g0180241 Helianthus annuus HOM05D004174 ORTHO05D004624 2.0e-157 559.7 398 68.3
Lj1g0010752 Lotus japonicus HOM05D004174 ORTHO05D004624 1.7e-156 556.6 436 67.2
Gohir.D08G260000 Gossypium hirsutum HOM05D004174 ORTHO05D004624 1.1e-155 553.9 402 67.9
Gorai.004G277900 Gossypium raimondii HOM05D004174 ORTHO05D004624 3.2e-155 552.4 409 67.5
Glyma.06G216700 Glycine max HOM05D004174 ORTHO05D004624 2.3e-153 546.2 439 66.5
MD15G1175700 Malus domestica HOM05D004174 ORTHO05D004624 5.1e-153 545.0 488 60.5
HanXRQChr03g0062501 Helianthus annuus HOM05D004174 ORTHO05D004624 5.6e-152 541.6 394 66.8
ATR1156G006 Amborella trichopoda HOM05D004174 ORTHO05D004624 2.1e-151 539.7 451 63.4
Lsat_1_v5_gn_7_42401 Lactuca sativa HOM05D004174 ORTHO05D004624 8.2e-151 537.7 390 65.4
Rhsim03G0246500 Rhododendron simsii HOM05D004174 ORTHO05D004624 3.1e-150 535.8 351 75.5
Lalb_Chr08g0234871 Lupinus albus HOM05D004174 ORTHO05D004624 3.4e-149 532.3 406 66.3
MELO3C026643.2 Cucumis melo HOM05D004174 ORTHO05D004624 1.0e-148 530.8 406 66.3
DCAR_009201 Daucus carota HOM05D004174 ORTHO05D004624 4.9e-148 528.5 391 66.5
Glyma.17G116600 Glycine max HOM05D004174 ORTHO05D004624 1.4e-147 526.9 413 62.7
arahy.Tifrunner.gnm1.ann1.SBVG8E Arachis hypogaea HOM05D004174 ORTHO05D004624 1.2e-146 523.9 411 63.5
CDE02G3646 Ceratophyllum demersum HOM05D004174 ORTHO05D004624 1.2e-146 523.9 385 67.5
Psat4g040360 Pisum sativum HOM05D004174 ORTHO05D004624 8.7e-145 517.7 383 65.8
TPR.G10694 Trifolium pratense HOM05D004174 ORTHO05D004624 1.5e-144 516.9 414 61.6
arahy.Tifrunner.gnm1.ann1.E6UBTJ Arachis hypogaea HOM05D004174 ORTHO05D004624 2.5e-144 516.2 423 61.9
Medtr4g113990 Medicago truncatula HOM05D004174 ORTHO05D004624 2.5e-144 516.2 382 64.9
GSVIVG01015501001 Vitis vinifera HOM05D004174 ORTHO05D004624 5.7e-144 515.0 309 79.3
HPP92_000685 Vanilla planifolia HOM05D004174 ORTHO05D004624 1.3e-143 513.8 403 64.3
Lalb_Chr07g0178801 Lupinus albus HOM05D004174 ORTHO05D004624 8.2e-143 511.1 383 64.0
HPP92_000661 Vanilla planifolia HOM05D004174 ORTHO05D004624 8.2e-143 511.1 403 63.8
VMungo1215G2625 Vigna mungo HOM05D004174 ORTHO05D004624 1.1e-142 510.8 385 66.2
Phvul.003G162700 Phaseolus vulgaris HOM05D004174 ORTHO05D004624 2.4e-142 509.6 385 65.5
AUR62033476 Chenopodium quinoa HOM05D004174 ORTHO05D004624 6.9e-142 508.1 440 60.9
Sed0008859 Sechium edule HOM05D004174 ORTHO05D004624 9.0e-142 507.7 384 64.6
ECA240G3275 Erigeron canadensis HOM05D004174 ORTHO05D004624 2.6e-141 506.1 331 71.9
Zm00001eb377430 Zea mays HOM05D004174 ORTHO05D004624 3.8e-140 502.3 416 62.0
Dinv41532 Davidia involucrata HOM05D004174 ORTHO05D004624 4.8e-135 485.3 346 69.4
Os06g0141166 Oryza sativa ssp. japonica HOM05D004174 ORTHO05D004624 3.1e-134 482.6 431 59.2
FAN26G0665 Fragaria x ananassa HOM05D004174 ORTHO05D004624 2.0e-128 463.4 263 84.4
SEGI_17043 Sequoiadendron giganteum HOM05D004174 ORTHO05D004624 5.7e-128 461.8 389 60.2
ClCG06G010920 Citrullus lanatus HOM05D004174 ORTHO05D004624 9.1e-126 454.5 393 58.5
Ah.02g124290 Amaranthus hybridus HOM05D004174 ORTHO05D004624 3.7e-111 406.0 251 76.9
Ah.14g080300 Amaranthus hybridus HOM05D004174 ORTHO05D004624 6.3e-111 405.2 247 77.3
Lj7A632G45 Lonicera japonica HOM05D004174 ORTHO05D004624 7.7e-109 398.3 280 70.4
Gohir.A08G239300 Gossypium hirsutum HOM05D004174 ORTHO05D004624 8.0e-106 388.3 280 68.6
AagrBONN_evm.TU.Sc2ySwM_368.699 Anthoceros agrestis HOM05D004174 ORTHO05D004624 2.0e-96 357.1 385 48.6
Lj4g0002160 Lotus japonicus HOM05D004174 ORTHO05D004624 6.3e-95 352.1 279 60.6
SEGI_09002 Sequoiadendron giganteum HOM05D004174 ORTHO05D004624 1.9e-91 340.5 272 57.7
Pp3c3_2090 Physcomitrium patens HOM05D004174 ORTHO05D004624 9.5e-91 338.2 401 46.4
SMO169G0291 Selaginella moellendorffii HOM05D004174 ORTHO05D004624 8.0e-90 335.1 250 63.6
Lj4A460T58 Lonicera japonica HOM05D004174 ORTHO05D004624 1.0e-89 334.7 235 70.2
Mapoly0103s0044 Marchantia polymorpha HOM05D004174 ORTHO05D004624 9.8e-88 328.2 252 60.3
AUR62011109 Chenopodium quinoa HOM05D004174 ORTHO05D004624 6.4e-79 298.9 197 77.2
AUR62030487 Chenopodium quinoa HOM05D004174 ORTHO05D004624 1.1e-78 298.1 172 83.7
Glyma.05G008302 Glycine max HOM05D004174 ORTHO05D004624 1.1e-65 255.0 177 70.6
SEGI_03330 Sequoiadendron giganteum HOM05D004174 ORTHO05D004624 3.0e-60 236.9 295 43.4
BolC2t07007H Brassica oleracea HOM05D004174 ORTHO05D004624 2.0e-56 224.2 204 55.4
Cpa.g.sc648.3 Carica papaya HOM05D004174 ORTHO05D004624 2.2e-47 194.1 195 52.8
AUR62011090 Chenopodium quinoa HOM05D003948 ORTHO05D004610 7.9e-45 185.7 195 52.8
Ah.14g080310 Amaranthus hybridus HOM05D004174 ORTHO05D004624 6.7e-44 182.6 195 51.8
Cc11_g15180 Coffea canephora HOM05D004174 ORTHO05D004624 8.7e-44 182.2 112 78.6
AUR62015314 Chenopodium quinoa HOM05D004174 ORTHO05D004624 1.9e-43 181.0 146 61.6
Cre09.g396900 Chlamydomonas reinhardtii HOM05D004174 ORTHO05D004624 1.4e-41 174.9 227 41.4
MD02G1035400 Malus domestica HOM05D004174 ORTHO05D004624 3.0e-36 157.1 82 86.6
Sabra06G0122300 Salix brachista HOM05D004174 ORTHO05D004624 7.4e-35 152.5 233 41.6
SEGI_13131 Sequoiadendron giganteum HOM05D004174 ORTHO05D004624 2.4e-33 147.5 297 34.3
Haze_27339 Corylus avellana HOM05D004174 ORTHO05D004624 5.3e-33 146.4 164 49.4
Cfa023976 Carpinus fangiana HOM05D003934 ORTHO05D005108 4.2e-30 136.7 304 31.9
Pp3c14_12120 Physcomitrium patens HOM05D004174 ORTHO05D004624 9.3e-30 135.6 260 36.2
Lj4C460T3 Lonicera japonica HOM05D004174 ORTHO05D004624 8.7e-28 129.0 76 78.9
MCO10G159 Micromonas commoda HOM05D004174 ORTHO05D004624 8.2e-26 122.5 351 28.8
Mapoly0019s0154 Marchantia polymorpha HOM05D004174 ORTHO05D004624 2.4e-25 120.9 297 32.0
Ah.12g053390 Amaranthus hybridus HOM05D004174 ORTHO05D004624 2.2e-23 114.4 63 82.5
Ah.12g055680 Amaranthus hybridus HOM05D004174 ORTHO05D004624 5.0e-23 113.2 63 82.5
Ah.05g171270 Amaranthus hybridus HOM05D004174 ORTHO05D004624 1.1e-22 112.1 63 81.0
CBR_g46446 Chara braunii HOM05D004174 ORTHO05D004624 1.1e-19 102.1 122 46.7
PRCOL_00006603 Prasinoderma coloniale HOM05D004174 ORTHO05D004624 2.5e-19 100.9 141 38.3
VMungo0647G2130 Vigna mungo HOM05D004174 ORTHO05D004624 2.2e-18 97.8 146 41.1
Cre13.g582476 Chlamydomonas reinhardtii HOM05D004174 ORTHO05D004624 1.1e-14 85.5 170 34.1
VMungo1215G0447 Vigna mungo HOM05D006361 ORTHO05D007824 3.3e-11 73.9 67 50.7
Ah.12g053410 Amaranthus hybridus HOM05D004174 ORTHO05D004624 1.7e-10 71.6 38 84.2
SMO141G0190 Selaginella moellendorffii HOM05D004174 ORTHO05D004624 4.8e-10 70.1 185 31.9
Psat3g000160 Pisum sativum HOM05D004174 ORTHO05D004624 2.4e-09 67.8 88 38.6
BcaNung04410 Brassica carinata HOM05D005723 ORTHO05D005968 6.5e-07 59.7 180 29.4
A05p02710 Brassica napus HOM05D005723 ORTHO05D005968 8.5e-07 59.3 180 28.9
BcaC02g12456 Brassica carinata HOM05D005723 ORTHO05D005968 7.2e-06 56.2 181 29.3
C04p03240 Brassica napus HOM05D005723 ORTHO05D005968 7.2e-06 56.2 181 29.3
BolC4t21962H Brassica oleracea HOM05D005723 ORTHO05D005968 7.2e-06 56.2 181 29.3
CARHR137150 Cardamine hirsuta HOM05D005723 ORTHO05D005968 9.4e-06 55.8 138 32.6
THA.LOC104802583 Tarenaya hassleriana HOM05D005723 ORTHO05D005968 9.4e-06 55.8 152 33.6


User provided reference genes

Program Settings