Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy7G01959 Aquilegia oxysepala HOM05D000424 ORTHO05D000355 8.3e-69 264.6 272 100.0
Lj4P166T39 Lonicera japonica HOM05D000424 ORTHO05D000355 5.1e-42 175.6 108 75.0
PSO541G2034 Papaver somniferum HOM05D000424 ORTHO05D000355 2.8e-40 169.9 108 69.4
HPP92_008936 Vanilla planifolia HOM05D000424 ORTHO05D000355 7.6e-38 161.8 107 70.1
FAN28G0499 Fragaria x ananassa HOM05D006441 ORTHO05D000355 1.3e-37 161.0 98 76.5
MSTRG.10608 Avicennia marina HOM05D000424 ORTHO05D000355 4.6e-35 152.5 105 62.9
Carub.0005s1609 Capsella rubella HOM05D000424 ORTHO05D000355 4.6e-35 152.5 109 67.0
Zm00001eb055980 Zea mays HOM05D000424 ORTHO05D000355 7.8e-35 151.8 107 64.5
A06p17960 Brassica napus HOM05D000424 ORTHO05D000355 8.6e-34 148.3 110 64.5
Thhalv10003830m.g Eutrema salsugineum HOM05D000424 ORTHO05D000355 1.1e-33 147.9 108 64.8
Cpa.g.sc129.66 Carica papaya HOM05D000424 ORTHO05D000355 1.5e-33 147.5 97 68.0
Nn7g38197 Nelumbo nucifera HOM05D000424 ORTHO05D000355 1.5e-33 147.5 271 79.3
Os03g0728200 Oryza sativa ssp. japonica HOM05D000424 ORTHO05D000355 1.5e-33 147.5 107 62.6
BcaC07g39437 Brassica carinata HOM05D000424 ORTHO05D000355 2.5e-33 146.7 110 63.6
C08p24760 Brassica napus HOM05D000424 ORTHO05D000355 2.5e-33 146.7 110 63.6
BolC8t50090H Brassica oleracea HOM05D000424 ORTHO05D000355 2.5e-33 146.7 110 63.6
BraA06t24887Z Brassica rapa HOM05D000424 ORTHO05D000355 3.3e-33 146.4 110 63.6
BcaB01g00677 Brassica carinata HOM05D000424 ORTHO05D000355 4.3e-33 146.0 110 64.5
SGA_v2.0_scaffold13G06403 Striga asiatica HOM05D000424 ORTHO05D000355 4.0e-31 139.4 111 57.7
Aa31LG4G18220 Aethionema arabicum HOM05D000424 ORTHO05D000355 6.9e-31 138.7 108 62.0
SGA_v2.0_scaffold373G50176 Striga asiatica HOM05D000424 ORTHO05D000355 6.9e-31 138.7 112 57.1
FvH4_1g18320 Fragaria vesca HOM05D000424 ORTHO05D000355 3.4e-30 136.3 81 79.0
FAN19G2437 Fragaria x ananassa HOM05D000424 ORTHO05D000355 3.4e-30 136.3 81 79.0
Aqoxy6G02961 Aquilegia oxysepala HOM05D000424 ORTHO05D000355 1.3e-29 134.4 69 92.8
RcHm_v2.0_Chr2g0108971 Rosa chinensis HOM05D000424 ORTHO05D000355 2.2e-29 133.7 77 80.5
CANSAT25G1384 Cannabis sativa HOM05D000424 ORTHO05D000355 6.4e-29 132.1 77 75.3
Prupe.6G215900 Prunus persica HOM05D000424 ORTHO05D000355 1.4e-28 131.0 77 77.9
Cfa006779 Carpinus fangiana HOM05D000424 ORTHO05D000355 1.9e-28 130.6 77 76.6
Nn2g14733 Nelumbo nucifera HOM05D000424 ORTHO05D000355 9.3e-28 128.3 81 71.6
Dinv26965 Davidia involucrata HOM05D000424 ORTHO05D000355 4.6e-27 125.9 76 76.3
FAN23G2322 Fragaria x ananassa HOM05D000424 ORTHO05D000355 6.0e-27 125.6 75 78.7
Ah.03g140170 Amaranthus hybridus HOM05D000424 ORTHO05D000355 7.8e-27 125.2 87 64.4
FAN26G1072 Fragaria x ananassa HOM05D000424 ORTHO05D000355 7.8e-27 125.2 76 77.6
AUR62007548 Chenopodium quinoa HOM05D000424 ORTHO05D000355 1.0e-26 124.8 82 68.3
Gohir.D03G031000 Gossypium hirsutum HOM05D000424 ORTHO05D000355 3.0e-26 123.2 77 71.4
Oeu013346.1 Olea europaea HOM05D000424 ORTHO05D000355 3.0e-26 123.2 77 72.7
AUR62004038 Chenopodium quinoa HOM05D000424 ORTHO05D000355 5.1e-26 122.5 82 69.5
Gorai.003G032600 Gossypium raimondii HOM05D000424 ORTHO05D000355 2.5e-25 120.2 77 70.1
Gohir.A02G149300 Gossypium hirsutum HOM05D000424 ORTHO05D000355 4.3e-25 119.4 76 71.1
QL02p049542 Quercus lobata HOM05D000424 ORTHO05D000355 9.6e-25 118.2 77 72.7
QL08p038611 Quercus lobata HOM05D000424 ORTHO05D000355 9.6e-25 118.2 77 72.7
Manes.12G118100 Manihot esculenta HOM05D000424 ORTHO05D000355 1.3e-24 117.9 75 72.0
TPR.G8466 Trifolium pratense HOM05D000424 ORTHO05D000355 2.1e-24 117.1 82 68.3
Ca_27130_v3 Cicer arietinum L. HOM05D000424 ORTHO05D000355 3.6e-24 116.3 80 70.0
Duzib147G1340 Durio zibethinus HOM05D000424 ORTHO05D000355 3.6e-24 116.3 71 74.6
GSVIVG01007280001 Vitis vinifera HOM05D000424 ORTHO05D000355 3.6e-24 116.3 70 74.3
Lalb_Chr13g0290421 Lupinus albus HOM05D000424 ORTHO05D000355 4.8e-24 115.9 77 74.0
SalBow5G1594 Salvia bowleyana HOM05D000424 ORTHO05D000355 4.8e-24 115.9 79 65.8
PGSC0003DMG400034554 Solanum tuberosum HOM05D000424 ORTHO05D000355 4.8e-24 115.9 73 75.3
Eucgr.H02347 Eucalyptus grandis HOM05D000424 ORTHO05D000355 6.2e-24 115.5 70 72.9
Actinidia01390 Actinidia chinensis HOM05D000424 ORTHO05D000355 8.1e-24 115.2 73 71.2
ATR0796G067 Amborella trichopoda HOM05D000424 ORTHO05D000355 8.1e-24 115.2 80 70.0
Sabra02G0137600 Salix brachista HOM05D000424 ORTHO05D000355 1.1e-23 114.8 76 68.4
Potri.002G176100 Populus trichocarpa HOM05D000424 ORTHO05D000355 1.4e-23 114.4 75 69.3
Lsat_1_v5_gn_8_80200 Lactuca sativa HOM05D000424 ORTHO05D000355 3.1e-23 113.2 79 59.5
Lj6g0020430 Lotus japonicus HOM05D000424 ORTHO05D000355 4.0e-23 112.8 78 70.5
PGR102G2719 Punica granatum HOM05D000424 ORTHO05D000355 5.3e-23 112.5 70 70.0
ECA236G4494 Erigeron canadensis HOM05D000032 ORTHO05D003522 6.9e-23 112.1 78 62.8
CAN.G574.31 Capsicum annuum HOM05D000424 ORTHO05D000355 1.5e-22 110.9 71 73.2
Solyc01g007267.1 Solanum lycopersicum HOM05D000424 ORTHO05D000355 1.5e-22 110.9 70 74.3
Sopen01g003270 Solanum pennellii HOM05D000424 ORTHO05D000355 2.0e-22 110.5 70 74.3
AL5G29690 Arabidopsis lyrata HOM05D000424 ORTHO05D000355 4.5e-22 109.4 79 67.1
Nitab4.5_0010740g0020 Nicotiana tabacum HOM05D000424 ORTHO05D000355 4.5e-22 109.4 69 73.9
CARHR279810 Cardamine hirsuta HOM05D000424 ORTHO05D000355 5.8e-22 109.0 84 60.7
PSO675G2454 Papaver somniferum HOM05D000424 ORTHO05D000355 5.8e-22 109.0 71 67.6
arahy.Tifrunner.gnm1.ann1.C70X24 Arachis hypogaea HOM05D000424 ORTHO05D000355 7.6e-22 108.6 77 66.2
Sc14g0002110 Simmondsia chinensis HOM05D000424 ORTHO05D000355 7.6e-22 108.6 71 69.0
QL06p038655 Quercus lobata HOM05D000424 ORTHO05D000355 1.7e-21 107.5 73 69.9
Cc04_g06170 Coffea canephora HOM05D000424 ORTHO05D000355 2.9e-21 106.7 70 70.0
Medtr8g071300 Medicago truncatula HOM05D000424 ORTHO05D000355 2.9e-21 106.7 73 69.9
CDE04G3089 Ceratophyllum demersum HOM05D001904 ORTHO05D001854 6.4e-21 105.5 69 71.0
HanXRQChr06g0172281 Helianthus annuus HOM05D000424 ORTHO05D000355 8.4e-21 105.1 78 57.7
Nitab4.5_0000020g0300 Nicotiana tabacum HOM05D000424 ORTHO05D000355 8.4e-21 105.1 62 77.4
Phvul.005G165800 Phaseolus vulgaris HOM05D000424 ORTHO05D000355 2.4e-20 103.6 70 68.6
DCAR_025825 Daucus carota HOM05D000424 ORTHO05D000355 4.2e-20 102.8 69 68.1
Migut.L00219 Erythranthe guttata HOM05D000424 ORTHO05D000355 2.1e-19 100.5 78 56.4
SHI12026 Sapria himalayana HOM05D000424 ORTHO05D000355 2.1e-19 100.5 73 61.6
THA.LOC104827758 Tarenaya hassleriana HOM05D000424 ORTHO05D000355 6.0e-19 99.0 70 68.6
MBI16_g09817_MAGBIO Magnolia biondii HOM05D000424 ORTHO05D000355 2.3e-18 97.1 57 77.2
Ciclev10025134m.g Citrus clementina HOM05D000424 ORTHO05D000355 3.9e-18 96.3 55 80.0
Aa31LG1G16260 Aethionema arabicum HOM05D001904 ORTHO05D001854 3.3e-17 93.2 70 62.9
Sed0020730 Sechium edule HOM05D000424 ORTHO05D000355 4.3e-17 92.8 59 72.9
ClCG01G017840 Citrullus lanatus HOM05D000424 ORTHO05D000355 6.2e-16 89.0 56 75.0
Atru.chr3.1070 Acer truncatum HOM05D000424 ORTHO05D000355 1.8e-15 87.4 51 78.4
CiPaw.07G037000 Carya illinoinensis HOM05D000424 ORTHO05D000355 3.4e-14 83.2 49 77.6
MELO3C026690.2 Cucumis melo HOM05D000424 ORTHO05D000355 7.6e-14 82.0 52 75.0
CsaV3_5G014140 Cucumis sativus L. HOM05D000424 ORTHO05D000355 1.3e-13 81.3 52 73.1
TAR381G0990 Trochodendron aralioides HOM05D000424 ORTHO05D000355 2.2e-13 80.5 54 68.5
BcaB02g09900 Brassica carinata HOM05D000424 ORTHO05D000355 3.8e-13 79.7 63 60.3
AL8G43540 Arabidopsis lyrata HOM05D000424 ORTHO05D000355 6.4e-13 79.0 59 64.4
CSS0011638 Camellia sinensis var. sinensis HOM05D000424 ORTHO05D000355 8.4e-13 78.6 47 76.6
Glyma.13G354300 Glycine max HOM05D000424 ORTHO05D000355 8.4e-13 78.6 52 73.1
CSS0044152 Camellia sinensis var. sinensis HOM05D000424 ORTHO05D000355 1.9e-12 77.4 47 74.5
Glyma.15G019900 Glycine max HOM05D000424 ORTHO05D000355 1.9e-12 77.4 51 74.5
SGA_v2.0_scaffold801G53619 Striga asiatica HOM05D000424 ORTHO05D000355 2.4e-12 77.0 55 63.6
Thecc.01G077400 Theobroma cacao HOM05D000424 ORTHO05D000355 7.1e-12 75.5 48 75.0
COL.COLO4_11624 Corchorus olitorius HOM05D000424 ORTHO05D000355 1.2e-11 74.7 49 73.5
Rhsim08G0089900 Rhododendron simsii HOM05D000424 ORTHO05D000355 1.6e-11 74.3 47 72.3
AT5G65820 Arabidopsis thaliana HOM05D000424 ORTHO05D000355 3.5e-11 73.2 57 63.2
Sp2g28910 Schrenkiella parvula HOM05D000424 ORTHO05D000355 3.0e-10 70.1 50 68.0
VMungo1080G1240 Vigna mungo HOM05D000424 ORTHO05D000355 3.9e-10 69.7 48 70.8
BcaC01g02831 Brassica carinata HOM05D000424 ORTHO05D000355 5.1e-10 69.3 50 68.0
C03p59840 Brassica napus HOM05D000424 ORTHO05D000355 5.1e-10 69.3 50 68.0
BolC3t18248H Brassica oleracea HOM05D000424 ORTHO05D000355 5.1e-10 69.3 50 68.0
Sp5g12350 Schrenkiella parvula HOM05D000424 ORTHO05D000355 8.7e-10 68.6 53 64.2
AT3G49730 Arabidopsis thaliana HOM05D000424 ORTHO05D000355 1.1e-09 68.2 51 66.7
Thhalv10010190m.g Eutrema salsugineum HOM05D000424 ORTHO05D000355 1.1e-09 68.2 54 63.0
Carub.0008s2671 Capsella rubella HOM05D000424 ORTHO05D000355 2.5e-09 67.0 48 70.8
A06p32690 Brassica napus HOM05D000424 ORTHO05D000355 3.3e-09 66.6 52 63.5
CARHR158820 Cardamine hirsuta HOM05D000424 ORTHO05D000355 7.4e-09 65.5 51 62.7
BraA06t26198Z Brassica rapa HOM05D000424 ORTHO05D000355 1.3e-08 64.7 52 61.5
SEGI_15364 Sequoiadendron giganteum HOM05D007173 ORTHO05D009151 4.8e-08 62.8 96 33.3
arahy.Tifrunner.gnm1.ann1.44AK4G Arachis hypogaea HOM05D000424 ORTHO05D000355 1.4e-07 61.2 37 81.1
CAN.G1226.19 Capsicum annuum HOM05D000424 ORTHO05D000355 2.4e-07 60.5 89 32.6
CDE09G1117 Ceratophyllum demersum HOM05D007173 ORTHO05D009151 2.4e-07 60.5 83 38.6
ATR0827G081 Amborella trichopoda HOM05D007173 ORTHO05D009151 5.3e-07 59.3 83 34.9
arahy.Tifrunner.gnm1.ann1.51T3ZK Arachis hypogaea HOM05D007173 ORTHO05D009151 5.3e-07 59.3 83 37.3
arahy.Tifrunner.gnm1.ann1.5SK0BH Arachis hypogaea HOM05D007173 ORTHO05D009151 5.3e-07 59.3 83 37.3
Lj1P839T30 Lonicera japonica HOM05D000424 ORTHO05D000355 5.3e-07 59.3 91 29.7
MSTRG.18528 Avicennia marina HOM05D007173 ORTHO05D009151 9.0e-07 58.5 83 32.5
AUR62039554 Chenopodium quinoa HOM05D000424 ORTHO05D000355 9.0e-07 58.5 75 37.3
Ah.02g128080 Amaranthus hybridus HOM05D000424 ORTHO05D000355 2.0e-06 57.4 61 39.3
ECA236G1506 Erigeron canadensis HOM05D000424 ORTHO05D000355 2.0e-06 57.4 70 34.3
BcaB02g10960 Brassica carinata HOM05D000397 ORTHO05D000492 2.6e-06 57.0 43 69.8
BcaB06g29544 Brassica carinata HOM05D000424 ORTHO05D000355 2.6e-06 57.0 93 31.2
Glyma.11G011600 Glycine max HOM05D000424 ORTHO05D000355 2.6e-06 57.0 79 38.0
Potri.005G066700 Populus trichocarpa HOM05D007173 ORTHO05D009151 2.6e-06 57.0 83 34.9
Sabra05G0054900 Salix brachista HOM05D000104 ORTHO05D006071 2.6e-06 57.0 83 34.9
EL10Ac9g21919 Beta vulgaris HOM05D000424 ORTHO05D000355 3.4e-06 56.6 91 37.4
Solyc12g014000.3 Solanum lycopersicum HOM05D000424 ORTHO05D000355 3.4e-06 56.6 91 31.9
MD17G1234700 Malus domestica HOM05D007173 ORTHO05D009151 4.5e-06 56.2 83 32.5
Prupe.3G134300 Prunus persica HOM05D007173 ORTHO05D009151 4.5e-06 56.2 66 40.9
BcaB01g03065 Brassica carinata HOM05D000424 ORTHO05D094144 5.8e-06 55.8 41 68.3
CAN.G479.71 Capsicum annuum HOM05D007173 ORTHO05D009151 5.8e-06 55.8 83 32.5
ClCG07G012730 Citrullus lanatus HOM05D000424 ORTHO05D000355 5.8e-06 55.8 79 38.0
Glyma.01G228800 Glycine max HOM05D000424 ORTHO05D000355 5.8e-06 55.8 75 38.7
Ciclev10000792m.g Citrus clementina HOM05D007173 ORTHO05D009151 7.6e-06 55.5 83 34.9
HanXRQChr03g0070621 Helianthus annuus HOM05D000424 ORTHO05D000355 7.6e-06 55.5 78 33.3
MELO3C033379.2 Cucumis melo HOM05D007173 ORTHO05D009151 1.0e-05 55.1 66 40.9
CsaV3_4G001470 Cucumis sativus L. HOM05D000424 ORTHO05D000355 1.0e-05 55.1 75 38.7


User provided reference genes

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