Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy7G01925 Aquilegia oxysepala HOM05D004389 ORTHO05D005457 3.3e-98 361.7 181 100.0
Actinidia05713 Actinidia chinensis HOM05D004389 ORTHO05D005457 3.2e-77 292.0 176 81.8
TAR383G0075 Trochodendron aralioides HOM05D004389 ORTHO05D005457 9.4e-77 290.4 182 81.3
GSVIVG01006266001 Vitis vinifera HOM05D004389 ORTHO05D005457 5.1e-75 284.6 179 80.4
TAR626G0408 Trochodendron aralioides HOM05D004389 ORTHO05D005457 8.8e-75 283.9 181 80.7
CSS0010710 Camellia sinensis var. sinensis HOM05D004389 ORTHO05D005457 7.4e-74 280.8 181 77.9
Cc02_g33710 Coffea canephora HOM05D004389 ORTHO05D005457 7.4e-74 280.8 175 81.1
COL.COLO4_29544 Corchorus olitorius HOM05D004389 ORTHO05D005457 7.4e-74 280.8 179 78.8
Rhsim05G0143800 Rhododendron simsii HOM05D004389 ORTHO05D005457 7.4e-74 280.8 181 79.0
Nn8g41138 Nelumbo nucifera HOM05D004389 ORTHO05D005457 1.3e-73 280.0 181 79.6
Thecc.05G307100 Theobroma cacao HOM05D004389 ORTHO05D005457 2.8e-73 278.9 179 78.2
Dinv23968 Davidia involucrata HOM05D004389 ORTHO05D005457 3.7e-73 278.5 181 78.5
PSO063G2909 Papaver somniferum HOM05D004389 ORTHO05D005457 1.4e-72 276.6 177 79.1
Ah.04g159790 Amaranthus hybridus HOM05D004389 ORTHO05D005457 2.4e-72 275.8 181 76.8
DCAR_008416 Daucus carota HOM05D004389 ORTHO05D005457 2.4e-72 275.8 175 80.0
CiPaw.07G015300 Carya illinoinensis HOM05D004389 ORTHO05D005457 4.1e-72 275.0 180 77.2
Hma1.2p1_0666F.1_g199560 Hydrangea macrophylla HOM05D004389 ORTHO05D005457 4.1e-72 275.0 177 78.5
Hma1.2p1_1362F.1_g278175 Hydrangea macrophylla HOM05D004389 ORTHO05D005457 4.1e-72 275.0 177 78.5
Potri.005G036500 Populus trichocarpa HOM05D004389 ORTHO05D005457 4.1e-72 275.0 168 80.4
Lj1g0012007 Lotus japonicus HOM05D004389 ORTHO05D005457 5.3e-72 274.6 177 76.8
LjContig00312_ERROPOS870357g0027537 Lotus japonicus HOM05D004389 ORTHO05D005457 7.0e-72 274.2 177 76.8
Sc16g0008410 Simmondsia chinensis HOM05D004389 ORTHO05D005457 7.0e-72 274.2 175 76.0
AUR62006921 Chenopodium quinoa HOM05D004389 ORTHO05D005457 9.1e-72 273.9 175 78.3
Ciclev10018002m.g Citrus clementina HOM05D004389 ORTHO05D005457 9.1e-72 273.9 181 76.2
MBI16_g00840_MAGBIO Magnolia biondii HOM05D004389 ORTHO05D005457 9.1e-72 273.9 181 75.7
Haze_23899 Corylus avellana HOM05D004389 ORTHO05D005457 1.2e-71 273.5 180 77.2
vmacro19638 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 1.5e-71 273.1 182 78.6
EL10Ac4g09330 Beta vulgaris HOM05D004389 ORTHO05D005457 2.0e-71 272.7 175 76.0
Nitab4.5_0002659g0010 Nicotiana tabacum HOM05D004389 ORTHO05D005457 2.0e-71 272.7 168 80.4
Manes.09G078200 Manihot esculenta HOM05D004389 ORTHO05D005457 2.6e-71 272.3 173 79.2
Nitab4.5_0002329g0100 Nicotiana tabacum HOM05D004389 ORTHO05D005457 2.6e-71 272.3 181 76.8
COL.COLO4_19842 Corchorus olitorius HOM05D004389 ORTHO05D005457 3.5e-71 271.9 179 76.5
PGR031G3032 Punica granatum HOM05D004389 ORTHO05D005457 5.9e-71 271.2 180 75.0
CANSAT21G2311 Cannabis sativa HOM05D004389 ORTHO05D005457 7.7e-71 270.8 180 77.8
Haze_04228 Corylus avellana HOM05D004389 ORTHO05D005457 7.7e-71 270.8 181 77.3
Duzib177G0146 Durio zibethinus HOM05D004389 ORTHO05D005457 7.7e-71 270.8 179 76.0
Medtr3g115100 Medicago truncatula HOM05D004389 ORTHO05D005457 1.0e-70 270.4 177 76.3
Lj7A473T46 Lonicera japonica HOM05D004389 ORTHO05D005457 1.3e-70 270.0 181 75.7
Glyma.06G240600 Glycine max HOM05D004389 ORTHO05D005457 1.7e-70 269.6 177 76.3
PSO782G4098 Papaver somniferum HOM05D004389 ORTHO05D005457 1.7e-70 269.6 179 77.1
AUR62005084 Chenopodium quinoa HOM05D004389 ORTHO05D005457 2.2e-70 269.2 167 79.6
Potri.013G025600 Populus trichocarpa HOM05D004389 ORTHO05D005457 2.9e-70 268.9 179 74.3
TWI73G0431 Tripterygium wilfordii HOM05D004389 ORTHO05D005457 3.8e-70 268.5 176 77.3
Nitab4.5_0000401g0080 Nicotiana tabacum HOM05D004389 ORTHO05D005457 5.0e-70 268.1 174 77.0
AUR62000890 Chenopodium quinoa HOM05D004389 ORTHO05D005457 6.5e-70 267.7 170 79.4
Gorai.004G242800 Gossypium raimondii HOM05D004389 ORTHO05D005457 8.5e-70 267.3 180 74.4
CSS0006579 Camellia sinensis var. sinensis HOM05D004389 ORTHO05D005457 1.1e-69 266.9 177 76.8
Glyma.05G086900 Glycine max HOM05D004389 ORTHO05D005457 1.1e-69 266.9 173 76.3
SGA_v2.0_scaffold16G07733 Striga asiatica HOM05D004389 ORTHO05D005457 1.1e-69 266.9 174 77.0
Gohir.A08G211800 Gossypium hirsutum HOM05D004389 ORTHO05D005457 1.9e-69 266.2 178 75.3
Ciclev10002655m.g Citrus clementina HOM05D004389 ORTHO05D005457 3.2e-69 265.4 181 74.6
Gohir.D08G228501 Gossypium hirsutum HOM05D004389 ORTHO05D005457 3.2e-69 265.4 178 74.7
QL03p004595 Quercus lobata HOM05D004389 ORTHO05D005457 3.2e-69 265.4 176 75.0
Sabra05G0037000 Salix brachista HOM05D004389 ORTHO05D005457 3.2e-69 265.4 177 75.7
Duzib128G0997 Durio zibethinus HOM05D004389 ORTHO05D005457 5.5e-69 264.6 181 74.0
Oeu045484.1 Olea europaea HOM05D004389 ORTHO05D005457 5.5e-69 264.6 175 77.1
Hund07052 Selenicereus undatus HOM05D004389 ORTHO05D005457 9.4e-69 263.8 192 70.8
CANSAT21G1920 Cannabis sativa HOM05D004389 ORTHO05D005457 1.2e-68 263.5 167 79.6
PGSC0003DMG400030976 Solanum tuberosum HOM05D004389 ORTHO05D005457 1.2e-68 263.5 177 75.1
TPR.G33525 Trifolium pratense HOM05D004389 ORTHO05D005457 1.6e-68 263.1 177 75.7
FAN05G0231 Fragaria x ananassa HOM05D004389 ORTHO05D005457 4.7e-68 261.5 181 73.5
MD04G1208300 Malus domestica HOM05D004389 ORTHO05D005457 6.1e-68 261.2 177 74.6
CsaV3_1G039140 Cucumis sativus L. HOM05D004389 ORTHO05D005457 8.0e-68 260.8 181 74.0
FAN05G0672 Fragaria x ananassa HOM05D004389 ORTHO05D005457 8.0e-68 260.8 177 74.6
Lj9C683G9 Lonicera japonica HOM05D004389 ORTHO05D005457 8.0e-68 260.8 171 75.4
Prupe.6G329200 Prunus persica HOM05D004389 ORTHO05D005457 8.0e-68 260.8 177 74.6
MELO3C015339.2 Cucumis melo HOM05D004389 ORTHO05D005457 1.0e-67 260.4 181 74.0
Solyc12g009810.3 Solanum lycopersicum HOM05D004389 ORTHO05D005457 1.0e-67 260.4 177 74.6
Cpa.g.sc58.76 Carica papaya HOM05D004389 ORTHO05D005457 1.4e-67 260.0 177 72.9
Migut.N00707 Erythranthe guttata HOM05D004389 ORTHO05D005457 1.4e-67 260.0 181 74.0
FvH4_6g05471 Fragaria vesca HOM05D004389 ORTHO05D005457 1.8e-67 259.6 177 74.0
Phvul.007G101500 Phaseolus vulgaris HOM05D004389 ORTHO05D005457 1.8e-67 259.6 179 75.4
ATR0626G001 Amborella trichopoda HOM05D004389 ORTHO05D005457 2.3e-67 259.2 174 73.6
Cfa006553 Carpinus fangiana HOM05D004389 ORTHO05D003318 2.3e-67 259.2 175 76.0
ClCG03G016830 Citrullus lanatus HOM05D004389 ORTHO05D005457 2.3e-67 259.2 173 76.3
Sopen12g004700 Solanum pennellii HOM05D004389 ORTHO05D005457 2.3e-67 259.2 177 75.1
FAN18G1342 Fragaria x ananassa HOM05D004389 ORTHO05D005457 3.0e-67 258.8 177 74.6
Sed0018697 Sechium edule HOM05D004389 ORTHO05D005457 3.0e-67 258.8 173 75.1
FAN05G1752 Fragaria x ananassa HOM05D004389 ORTHO05D005457 3.9e-67 258.5 177 74.6
RcHm_v2.0_Chr3g0454251 Rosa chinensis HOM05D004389 ORTHO05D005457 3.9e-67 258.5 177 75.1
Atru.chr2.467 Acer truncatum HOM05D004389 ORTHO05D005457 6.7e-67 257.7 181 73.5
FAN05G0500 Fragaria x ananassa HOM05D004389 ORTHO05D005457 6.7e-67 257.7 177 74.6
FAN14G5008 Fragaria x ananassa HOM05D004389 ORTHO05D005457 8.8e-67 257.3 181 72.4
Medtr3g096610 Medicago truncatula HOM05D004389 ORTHO05D005457 8.8e-67 257.3 174 75.3
FAN09G0842 Fragaria x ananassa HOM05D004389 ORTHO05D005457 1.5e-66 256.5 177 74.0
PGSC0003DMG402007838 Solanum tuberosum HOM05D004389 ORTHO05D005457 1.5e-66 256.5 177 74.0
SGA_v2.0_scaffold11G05813 Striga asiatica HOM05D004389 ORTHO05D005457 2.0e-66 256.1 168 76.8
HanXRQChr14g0460141 Helianthus annuus HOM05D004389 ORTHO05D005457 4.4e-66 255.0 176 74.4
ECA236G1487 Erigeron canadensis HOM05D004389 ORTHO05D005457 9.7e-66 253.8 175 73.1
Eucgr.H04472 Eucalyptus grandis HOM05D004389 ORTHO05D005457 1.7e-65 253.1 179 72.6
THA.LOC104805865 Tarenaya hassleriana HOM05D004389 ORTHO05D005457 1.7e-65 253.1 181 70.7
arahy.Tifrunner.gnm1.ann1.95MSG7 Arachis hypogaea HOM05D004389 ORTHO05D005457 2.8e-65 252.3 181 71.8
CDE02G2165 Ceratophyllum demersum HOM05D004389 ORTHO05D005457 2.8e-65 252.3 175 72.6
Sabra13G0026700 Salix brachista HOM05D004389 ORTHO05D005457 4.8e-65 251.5 206 66.0
AUR62000567 Chenopodium quinoa HOM05D004389 ORTHO05D005457 6.3e-65 251.1 160 77.5
unitig_747.g21568 Utricularia gibba HOM05D004389 ORTHO05D005457 1.4e-64 250.0 181 71.3
vmacro08924 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 1.4e-64 250.0 223 62.8
GSVIVG01000019001 Vitis vinifera HOM05D004389 ORTHO05D005457 1.8e-64 249.6 159 80.5
BcaC09g50404 Brassica carinata HOM05D004389 ORTHO05D005457 2.4e-64 249.2 176 70.5
Peaxi162Scf00523g00530 Petunia axillaris HOM05D004389 ORTHO05D005457 3.1e-64 248.8 172 73.8
BolC1t02532H Brassica oleracea HOM05D004389 ORTHO05D005457 5.3e-64 248.1 176 69.9
Aa31sc17G40 Aethionema arabicum HOM05D004389 ORTHO05D005457 7.0e-64 247.7 173 71.1
C01p25870 Brassica napus HOM05D004389 ORTHO05D005457 7.0e-64 247.7 176 70.5
A01p20570 Brassica napus HOM05D004389 ORTHO05D005457 1.2e-63 246.9 176 69.9
FvH4_5g27531 Fragaria vesca HOM05D004389 ORTHO05D005457 1.2e-63 246.9 169 74.6
TWI53G0891 Tripterygium wilfordii HOM05D004389 ORTHO05D005457 1.2e-63 246.9 168 72.6
Rhsim05G0010600 Rhododendron simsii HOM05D004389 ORTHO05D005457 1.6e-63 246.5 214 61.7
Sp7g15350 Schrenkiella parvula HOM05D004389 ORTHO05D005457 1.6e-63 246.5 179 68.7
Aa31sc17G90 Aethionema arabicum HOM05D004389 ORTHO05D005457 2.0e-63 246.1 173 70.5
BcaNung00158 Brassica carinata HOM05D004389 ORTHO05D005457 2.0e-63 246.1 177 70.1
BraA01t01985Z Brassica rapa HOM05D004389 ORTHO05D005457 4.5e-63 245.0 176 69.3
Zm00001eb272600 Zea mays HOM05D004389 ORTHO05D005457 5.9e-63 244.6 165 73.9
HPP92_010418 Vanilla planifolia HOM05D004389 ORTHO05D005457 6.5e-62 241.1 168 73.2
BcaB03g14176 Brassica carinata HOM05D004389 ORTHO05D005457 1.1e-61 240.4 179 68.7
Carub.0007s2468 Capsella rubella HOM05D004389 ORTHO05D005457 2.5e-61 239.2 176 67.0
Lsat_1_v5_gn_7_96081 Lactuca sativa HOM05D004389 ORTHO05D005457 2.5e-61 239.2 178 70.8
CARHR223240 Cardamine hirsuta HOM05D004389 ORTHO05D005457 3.2e-61 238.8 168 71.4
Zm00001eb264580 Zea mays HOM05D004389 ORTHO05D005457 3.2e-61 238.8 172 71.5
AL7G38020 Arabidopsis lyrata HOM05D004389 ORTHO05D005457 2.1e-60 236.1 168 69.6
Thhalv10026361m.g Eutrema salsugineum HOM05D004389 ORTHO05D005457 1.4e-59 233.4 177 67.2
AT4G16710 Arabidopsis thaliana HOM05D004389 ORTHO05D005457 3.0e-59 232.3 168 69.0
HanXRQChr04g0126711 Helianthus annuus HOM05D004389 ORTHO05D005457 5.2e-59 231.5 174 71.3
SEGI_15909 Sequoiadendron giganteum HOM05D004389 ORTHO05D005457 1.4e-56 223.4 175 65.7
Psat0s2070g0160 Pisum sativum HOM05D004389 ORTHO05D005457 5.3e-56 221.5 150 75.3
Psat0s1802g0120 Pisum sativum HOM05D004389 ORTHO05D005457 1.6e-55 219.9 150 74.7
Aqoxy4G02160 Aquilegia oxysepala HOM05D004389 ORTHO05D005457 1.0e-54 217.2 116 94.8
RcHm_v2.0_Chr7g0218901 Rosa chinensis HOM05D004389 ORTHO05D005457 1.1e-53 213.8 147 74.1
Lalb_Chr05g0219701 Lupinus albus HOM05D004389 ORTHO05D005457 4.2e-53 211.8 168 65.5
Dinv40263 Davidia involucrata HOM05D004389 ORTHO05D005457 3.1e-48 195.7 120 83.3
vmacro22564 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 3.5e-47 192.2 170 62.4
AagrBONN_evm.TU.Sc2ySwM_117.3666 Anthoceros agrestis HOM05D004389 ORTHO05D005457 5.0e-46 188.3 162 56.8
Prupe.5G030200 Prunus persica HOM05D004389 ORTHO05D005457 3.3e-45 185.7 117 82.1
AagrBONN_evm.TU.Sc2ySwM_344.4143 Anthoceros agrestis HOM05D007251 ORTHO05D009266 1.2e-44 183.7 179 53.1
Peaxi162Scf02135g00022 Petunia axillaris HOM05D004389 ORTHO05D005457 5.2e-43 178.3 168 60.1
Os02g0467700 Oryza sativa ssp. japonica HOM05D004389 ORTHO05D005457 8.9e-43 177.6 116 77.6
Mapoly0013s0083 Marchantia polymorpha HOM05D004389 ORTHO05D005457 3.4e-42 175.6 168 51.8
Pp3c11_4930 Physcomitrium patens HOM05D004389 ORTHO05D005457 9.8e-42 174.1 165 53.9
SMO171G0140 Selaginella moellendorffii HOM05D004389 ORTHO05D005457 3.7e-41 172.2 165 51.5
vmacro15018 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 1.2e-39 167.2 158 58.2
vmacro22211 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 9.5e-37 157.5 188 52.1
PRCOL_00003734 Prasinoderma coloniale HOM05D004389 ORTHO05D005457 1.5e-34 150.2 160 49.4
Aqoxy5G02271 Aquilegia oxysepala HOM05D004389 ORTHO05D005457 2.2e-33 146.4 95 81.1
CAN.G551.74 Capsicum annuum HOM05D004389 ORTHO05D005457 4.9e-33 145.2 104 71.2
CBR_g24390 Chara braunii HOM05D004389 ORTHO05D005457 1.4e-32 143.7 222 39.2
Ca_16978_v3 Cicer arietinum L. HOM05D004389 ORTHO05D005457 3.2e-32 142.5 86 81.4
Cre13.g585850 Chlamydomonas reinhardtii HOM05D004389 ORTHO05D005457 7.0e-32 141.4 170 47.6
Zm00001eb058290 Zea mays HOM05D004389 ORTHO05D005457 2.0e-31 139.8 83 80.7
RhsimUnG0192500 Rhododendron simsii HOM05D004389 ORTHO05D005457 2.7e-31 139.4 83 79.5
TPR.G33563 Trifolium pratense HOM05D004389 ORTHO05D005457 6.0e-31 138.3 83 79.5
MCO09G816 Micromonas commoda HOM05D004389 ORTHO05D005457 5.0e-30 135.2 163 46.0
SHI18162 Sapria himalayana HOM05D004389 ORTHO05D005457 2.8e-28 129.4 142 50.7
TPR.G30972 Trifolium pratense HOM05D004389 ORTHO05D005457 8.9e-27 124.4 89 68.5
Nitab4.5_0006964g0010 Nicotiana tabacum HOM05D004389 ORTHO05D005457 4.4e-26 122.1 88 69.3
MD15G1188200 Malus domestica HOM05D004389 ORTHO05D005457 9.2e-24 114.4 117 57.3
FvH4_6g10990 Fragaria vesca HOM05D004389 ORTHO05D005457 1.0e-22 110.9 99 60.6
Actinidia39666 Actinidia chinensis HOM05D004389 ORTHO05D056204 1.9e-21 106.7 138 49.3
QL07p009462 Quercus lobata HOM05D004389 ORTHO05D005457 5.6e-21 105.1 75 70.7
Zm00001eb380920 Zea mays HOM05D004389 ORTHO05D005457 7.3e-21 104.8 82 62.2
vmacro15154 Vaccinium macrocarpon HOM05D004389 ORTHO05D022937 1.5e-13 80.5 54 70.4
Cfa025624 Carpinus fangiana HOM05D004389 ORTHO05D125512 8.1e-12 74.7 171 34.5
SHI18161 Sapria himalayana HOM05D004389 ORTHO05D005457 3.1e-11 72.8 49 63.3
Medtr6g452950 Medicago truncatula HOM05D029366 ORTHO05D022937 8.9e-11 71.2 54 59.3
HPP92_010328 Vanilla planifolia HOM05D004389 ORTHO05D022937 3.4e-10 69.3 42 69.0
vmacro17239 Vaccinium macrocarpon HOM05D040504 ORTHO05D426804 9.9e-10 67.8 148 35.1
QL07p009230 Quercus lobata HOM05D004389 ORTHO05D005457 3.8e-09 65.9 85 45.9


User provided reference genes

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