Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy7G01749 Aquilegia oxysepala HOM05D004019 ORTHO05D005136 0.0e+00 4943.6 2528 100.0
TAR624G1332 Trochodendron aralioides HOM05D004019 ORTHO05D005136 0.0e+00 3843.1 2578 77.0
Nn8g39221 Nelumbo nucifera HOM05D004019 ORTHO05D005136 0.0e+00 3821.9 2540 77.2
Dinv14207 Davidia involucrata HOM05D004019 ORTHO05D005136 0.0e+00 3609.3 2538 73.4
PSO782G0289 Papaver somniferum HOM05D004019 ORTHO05D005136 0.0e+00 3603.1 2558 72.7
PSO063G5962 Papaver somniferum HOM05D004019 ORTHO05D005136 0.0e+00 3602.8 2558 72.9
Dinv30236 Davidia involucrata HOM05D004019 ORTHO05D005136 0.0e+00 3585.4 2538 73.5
CSS0034867 Camellia sinensis var. sinensis HOM05D004019 ORTHO05D005136 0.0e+00 3513.4 2544 72.1
Prupe.1G464500 Prunus persica HOM05D004019 ORTHO05D005136 0.0e+00 3493.7 2550 70.6
GSVIVG01035749001 Vitis vinifera HOM05D004019 ORTHO05D005136 0.0e+00 3486.4 2539 71.3
RcHm_v2.0_Chr6g0312581 Rosa chinensis HOM05D004019 ORTHO05D005136 0.0e+00 3476.4 2544 70.6
Ciclev10007225m.g Citrus clementina HOM05D004019 ORTHO05D005136 0.0e+00 3474.1 2539 70.7
Actinidia13300 Actinidia chinensis HOM05D004019 ORTHO05D005136 0.0e+00 3455.6 2536 70.6
Thecc.09G037700 Theobroma cacao HOM05D004019 ORTHO05D005136 0.0e+00 3449.8 2548 70.9
CiPaw.07G216600 Carya illinoinensis HOM05D004019 ORTHO05D005136 0.0e+00 3443.7 2547 70.4
COL.COLO4_18737 Corchorus olitorius HOM05D004019 ORTHO05D005136 0.0e+00 3437.9 2548 70.3
FvH4_2g30330 Fragaria vesca HOM05D004019 ORTHO05D005136 0.0e+00 3437.5 2537 70.1
Atru.chr7.2305 Acer truncatum HOM05D004019 ORTHO05D005136 0.0e+00 3423.3 2543 70.5
TWI63G0705 Tripterygium wilfordii HOM05D004019 ORTHO05D005136 0.0e+00 3421.3 2557 69.9
MD15G1113500 Malus domestica HOM05D004019 ORTHO05D005136 0.0e+00 3418.2 2573 69.1
Potri.006G244900 Populus trichocarpa HOM05D004019 ORTHO05D005136 0.0e+00 3414.4 2558 70.2
FAN24G2881 Fragaria x ananassa HOM05D004019 ORTHO05D005136 0.0e+00 3412.5 2568 69.2
Gorai.009G053000 Gossypium raimondii HOM05D004019 ORTHO05D005136 0.0e+00 3380.9 2555 69.1
CANSAT25G1365 Cannabis sativa HOM05D004019 ORTHO05D005136 0.0e+00 3367.0 2549 68.5
CANSAT56G4370 Cannabis sativa HOM05D004019 ORTHO05D005136 0.0e+00 3356.6 2556 68.5
Lalb_Chr11g0064021 Lupinus albus HOM05D004019 ORTHO05D005136 0.0e+00 3326.6 2537 68.4
MBI03_g19627_MAGBIO Magnolia biondii HOM05D004019 ORTHO05D005136 0.0e+00 3325.8 2408 72.5
Ca_15687_v3 Cicer arietinum L. HOM05D004019 ORTHO05D005136 0.0e+00 3315.4 2539 68.1
Lj1g0020850 Lotus japonicus HOM05D004019 ORTHO05D005136 0.0e+00 3305.0 2534 68.0
Glyma.06G074700 Glycine max HOM05D004019 ORTHO05D005136 0.0e+00 3299.2 2547 67.6
Psat5g025600 Pisum sativum HOM05D004019 ORTHO05D005136 0.0e+00 3280.7 2534 67.5
Sabra06G0191800 Salix brachista HOM05D004019 ORTHO05D005136 0.0e+00 3273.8 2604 67.0
Medtr3g108360 Medicago truncatula HOM05D004019 ORTHO05D005136 0.0e+00 3271.9 2534 67.2
Rhsim02G0185100 Rhododendron simsii HOM05D004019 ORTHO05D005136 0.0e+00 3269.2 2859 62.3
arahy.Tifrunner.gnm1.ann1.WYF2AC Arachis hypogaea HOM05D004019 ORTHO05D005136 0.0e+00 3259.5 2559 66.7
TPR.G12417 Trifolium pratense HOM05D004019 ORTHO05D005136 0.0e+00 3259.2 2534 67.1
ATR1120G055 Amborella trichopoda HOM05D004019 ORTHO05D005136 0.0e+00 3246.1 2546 66.7
Sopen08g021930 Solanum pennellii HOM05D004019 ORTHO05D005136 0.0e+00 3226.4 2536 66.8
Migut.A00257 Erythranthe guttata HOM05D004019 ORTHO05D005136 0.0e+00 3210.6 2540 65.6
PGR031G1071 Punica granatum HOM05D004019 ORTHO05D005136 0.0e+00 3208.7 2543 66.1
Eucgr.C01572 Eucalyptus grandis HOM05D004019 ORTHO05D005136 0.0e+00 3197.1 2549 66.0
CsaV3_3G046830 Cucumis sativus L. HOM05D004019 ORTHO05D005136 0.0e+00 3191.0 2546 65.6
MSTRG.25887 Avicennia marina HOM05D004019 ORTHO05D005136 0.0e+00 3181.3 2537 65.3
arahy.Tifrunner.gnm1.ann1.P4KF2E Arachis hypogaea HOM05D004019 ORTHO05D005136 0.0e+00 3179.0 2548 65.9
Cc08_g08140 Coffea canephora HOM05D004019 ORTHO05D005136 0.0e+00 3170.6 2349 69.9
HanXRQChr17g0539391 Helianthus annuus HOM05D004019 ORTHO05D005136 0.0e+00 3152.1 2556 65.3
THA.LOC104803772 Tarenaya hassleriana HOM05D004019 ORTHO05D005136 0.0e+00 3151.7 2549 65.1
Sed0026885 Sechium edule HOM05D004019 ORTHO05D005136 0.0e+00 3142.8 2543 64.9
Sc09g0008920 Simmondsia chinensis HOM05D004019 ORTHO05D005136 0.0e+00 3123.6 2540 64.4
Phvul.009G099400 Phaseolus vulgaris HOM05D004019 ORTHO05D005136 0.0e+00 3111.2 2236 71.9
Lsat_1_v5_gn_3_27801 Lactuca sativa HOM05D004019 ORTHO05D005136 0.0e+00 3094.3 2594 64.3
ECA246G1280 Erigeron canadensis HOM05D004019 ORTHO05D005136 0.0e+00 3061.9 2566 63.6
Carub.0004s0550 Capsella rubella HOM05D004019 ORTHO05D005136 0.0e+00 3043.4 2544 63.4
Sp4g05330 Schrenkiella parvula HOM05D004019 ORTHO05D005136 0.0e+00 3028.0 2548 63.1
AT2G25730 Arabidopsis thaliana HOM05D004019 ORTHO05D005136 0.0e+00 3026.1 2543 63.2
EL10Ac2g02527 Beta vulgaris HOM05D004019 ORTHO05D005136 0.0e+00 3022.6 2556 63.0
AL4G17350 Arabidopsis lyrata HOM05D004019 ORTHO05D005136 0.0e+00 3018.0 2543 63.0
AUR62024824 Chenopodium quinoa HOM05D004019 ORTHO05D005136 0.0e+00 3017.3 2542 62.7
AUR62032391 Chenopodium quinoa HOM05D004019 ORTHO05D005136 0.0e+00 3002.2 2542 62.5
CARHR115530 Cardamine hirsuta HOM05D004019 ORTHO05D005136 0.0e+00 2996.1 2548 63.1
C03p32450 Brassica napus HOM05D004019 ORTHO05D005136 0.0e+00 2972.2 2537 62.5
A03p27040 Brassica napus HOM05D004019 ORTHO05D005136 0.0e+00 2969.5 2536 62.5
BraA03t11915Z Brassica rapa HOM05D004019 ORTHO05D005136 0.0e+00 2952.2 2568 61.8
BolC3t15586H Brassica oleracea HOM05D004019 ORTHO05D005136 0.0e+00 2947.5 2569 61.7
Manes.03G064200 Manihot esculenta HOM05D004019 ORTHO05D005136 0.0e+00 2907.9 2088 72.4
Thhalv10000005m.g Eutrema salsugineum HOM05D004019 ORTHO05D005136 0.0e+00 2837.8 2235 66.5
Aa31LG5G9950 Aethionema arabicum HOM05D004019 ORTHO05D005136 0.0e+00 2834.3 2565 60.0
SGA_v2.0_scaffold280G46835 Striga asiatica HOM05D004019 ORTHO05D005136 0.0e+00 2832.0 2608 59.9
Lj8C607G10 Lonicera japonica HOM05D004019 ORTHO05D005136 0.0e+00 2784.6 1873 76.4
QL12p030977 Quercus lobata HOM05D004019 ORTHO05D005136 0.0e+00 2736.4 1889 74.7
MELO3C003655.2 Cucumis melo HOM05D004019 ORTHO05D005136 0.0e+00 2677.9 2036 68.6
VMungo1309G1295 Vigna mungo HOM05D004019 ORTHO05D005136 0.0e+00 2502.2 1733 74.8
Gohir.D05G051300 Gossypium hirsutum HOM05D004019 ORTHO05D005136 0.0e+00 2439.5 1643 76.6
Zm00001eb161040 Zea mays HOM05D004019 ORTHO05D005136 0.0e+00 2415.6 2306 56.3
FAN20G0521 Fragaria x ananassa HOM05D004019 ORTHO05D005136 0.0e+00 2253.8 1838 64.1
DCAR_006256 Daucus carota HOM05D004019 ORTHO05D005136 0.0e+00 2166.7 1777 65.8
Oeu063261.5 Olea europaea HOM05D004019 ORTHO05D005136 0.0e+00 2150.9 1725 66.7
Pp3c19_2530 Physcomitrium patens HOM05D004019 ORTHO05D005136 0.0e+00 2144.4 2694 47.6
Gohir.A05G049400 Gossypium hirsutum HOM05D004019 ORTHO05D005136 0.0e+00 2105.9 1747 64.1
Mapoly0049s0060 Marchantia polymorpha HOM05D004019 ORTHO05D005136 0.0e+00 2078.1 2772 45.3
unitig_747.g21875 Utricularia gibba HOM05D004019 ORTHO05D005136 0.0e+00 2011.1 1692 62.5
Hma1.2p1_0140F.1_g063760 Hydrangea macrophylla HOM05D004019 ORTHO05D005136 0.0e+00 1734.5 1188 74.3
SMO172G0089 Selaginella moellendorffii HOM05D004019 ORTHO05D005136 0.0e+00 1716.4 2565 41.8
Hma1.2p1_0140F.1_g063770 Hydrangea macrophylla HOM05D004019 ORTHO05D005136 0.0e+00 1684.8 1177 74.3
Solyc08g068010.2 Solanum lycopersicum HOM05D004019 ORTHO05D005136 0.0e+00 1674.4 1146 75.5
Cpa.g.sc205.26 Carica papaya HOM05D004019 ORTHO05D005136 0.0e+00 1637.9 1099 77.3
Ah.12g060340 Amaranthus hybridus HOM05D004019 ORTHO05D005136 0.0e+00 1612.0 1419 62.2
vmacro08818 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 0.0e+00 1558.1 1162 70.9
CDE10G0881 Ceratophyllum demersum HOM05D004019 ORTHO05D005136 0.0e+00 1536.5 1624 53.4
Peaxi162Scf00105g00818 Petunia axillaris HOM05D004019 ORTHO05D005136 0.0e+00 1525.4 1144 70.6
CBR_g31401 Chara braunii HOM05D004019 ORTHO05D005136 0.0e+00 1525.0 2359 41.1
AagrBONN_evm.TU.Sc2ySwM_340.130 Anthoceros agrestis HOM05D004019 ORTHO05D005136 0.0e+00 1489.6 2691 37.2
Nitab4.5_0000250g0110 Nicotiana tabacum HOM05D004019 ORTHO05D005136 0.0e+00 1448.7 1496 54.2
SEGI_05898 Sequoiadendron giganteum HOM05D004019 ORTHO05D005136 0.0e+00 1407.1 1189 63.8
FAN20G1524 Fragaria x ananassa HOM05D004019 ORTHO05D005136 0.0e+00 1347.4 854 80.0
HPP92_006443 Vanilla planifolia HOM05D004019 ORTHO05D005136 0.0e+00 1345.5 1171 62.7
Nitab4.5_0002393g0030 Nicotiana tabacum HOM05D004019 ORTHO05D005136 0.0e+00 1286.2 1485 50.2
CDE10G0547 Ceratophyllum demersum HOM05D004019 ORTHO05D005136 0.0e+00 1224.9 901 68.7
Gohir.A05G049350 Gossypium hirsutum HOM05D004019 ORTHO05D005136 0.0e+00 1181.4 745 80.7
HPP92_006442 Vanilla planifolia HOM05D004019 ORTHO05D005136 0.0e+00 1102.8 1128 52.8
vmacro11105 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 1.4e-295 1021.1 670 78.5
Haze_21654 Corylus avellana HOM05D004019 ORTHO05D005136 4.2e-276 956.4 609 80.6
vmacro11102 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 1.5e-265 921.4 1030 51.4
SHI11646 Sapria himalayana HOM05D004019 ORTHO05D000023 1.6e-243 848.2 1064 48.3
Ah.12g060350 Amaranthus hybridus HOM05D004019 ORTHO05D005136 2.5e-236 824.3 906 50.3
Haze_21655 Corylus avellana HOM05D004019 ORTHO05D005136 1.4e-231 808.5 634 68.9
Haze_21656 Corylus avellana HOM05D004019 ORTHO05D005136 3.2e-231 807.4 912 50.1
Nitab4.5_0000250g0120 Nicotiana tabacum HOM05D004019 ORTHO05D005136 1.5e-196 692.2 844 50.5
Solyc08g068040.3 Solanum lycopersicum HOM05D004019 ORTHO05D005136 1.2e-190 672.5 664 54.4
QL12p030952 Quercus lobata HOM05D004019 ORTHO05D005136 4.7e-190 670.6 740 51.1
Peaxi162Scf00105g00812 Petunia axillaris HOM05D004019 ORTHO05D005136 6.3e-187 660.2 665 53.2
Nitab4.5_0002393g0010 Nicotiana tabacum HOM05D004019 ORTHO05D005136 4.4e-180 637.5 384 81.5
SHI11647 Sapria himalayana HOM05D004019 ORTHO05D005136 1.2e-177 629.4 872 42.8
Cpa.g.sc205.24 Carica papaya HOM05D004019 ORTHO05D005136 8.8e-173 613.2 495 67.1
Cpa.g.sc205.19 Carica papaya HOM05D004019 ORTHO05D005136 1.5e-167 595.9 487 62.4
Hund02996 Selenicereus undatus HOM05D004019 ORTHO05D005136 1.6e-166 592.4 613 56.3
ClCG05G017320 Citrullus lanatus HOM05D004019 ORTHO05D005136 1.0e-165 589.7 674 48.7
Peaxi162Scf00105g00817 Petunia axillaris HOM05D004019 ORTHO05D005136 5.5e-159 567.4 489 61.6
DCAR_006255 Daucus carota HOM05D004019 ORTHO05D005136 7.8e-153 547.0 500 60.2
vmacro11103 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 7.3e-135 487.3 547 51.6
SEGI_01785 Sequoiadendron giganteum HOM05D004019 ORTHO05D005136 8.9e-133 480.3 513 50.3
SalBow4G2655 Salvia bowleyana HOM05D004019 ORTHO05D005136 2.2e-123 449.1 477 50.9
Os01g0593000 Oryza sativa ssp. japonica HOM05D004019 ORTHO05D005136 2.2e-115 422.5 264 77.3
vmacro11104 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 1.4e-106 393.3 239 84.5
unitig_747.g21874 Utricularia gibba HOM05D004019 ORTHO05D005136 7.4e-95 354.4 351 53.8
Nitab4.5_0000250g0090 Nicotiana tabacum HOM05D004019 ORTHO05D005136 4.5e-92 345.1 180 92.2
Hma1.2p1_0140F.1_g063780 Hydrangea macrophylla HOM05D004019 ORTHO05D005136 1.4e-85 323.6 201 81.6
Ah.12g060330 Amaranthus hybridus HOM05D004019 ORTHO05D005136 5.3e-85 321.6 180 85.0
Haze_21653 Corylus avellana HOM05D004019 ORTHO05D005136 1.8e-80 306.6 220 71.4
Cfa013229 Carpinus fangiana HOM05D004019 ORTHO05D005136 3.9e-80 305.4 287 59.6
vmacro11106 Vaccinium macrocarpon HOM05D005362 ORTHO05D006895 1.7e-75 290.0 228 64.9
DCAR_006257 Daucus carota HOM05D004019 ORTHO05D005136 2.2e-75 289.7 151 94.0
SEGI_29718 Sequoiadendron giganteum HOM05D004019 ORTHO05D005136 6.1e-73 281.6 158 84.8
SHI11644 Sapria himalayana HOM05D004019 ORTHO05D000014 5.2e-64 251.9 253 56.1
Cpa.g.sc205.16 Carica papaya HOM05D004019 ORTHO05D005136 2.9e-59 236.1 315 44.4
Nitab4.5_0000250g0100 Nicotiana tabacum HOM05D004019 ORTHO05D005136 2.7e-57 229.6 337 42.7
Cc00_g31360 Coffea canephora HOM05D004019 ORTHO05D005136 1.2e-52 214.2 306 42.8
Cc08_g08730 Coffea canephora HOM05D000021 ORTHO05D000010 7.2e-50 204.9 306 41.8
DCAR_006254 Daucus carota HOM05D004019 ORTHO05D005136 4.4e-47 195.7 300 39.7
SHI11640 Sapria himalayana HOM05D004019 ORTHO05D000023 1.1e-45 191.0 251 42.2
PRCOL_00001920 Prasinoderma coloniale HOM05D004019 ORTHO05D005136 4.3e-42 179.1 1199 23.9
Hma1.2p1_0140F.1_g063800 Hydrangea macrophylla HOM05D004019 ORTHO05D005136 1.8e-40 173.7 116 77.6
unitig_747.g21873 Utricularia gibba HOM05D004019 ORTHO05D005136 8.9e-40 171.4 305 38.4
HanXRQChr03g0075941 Helianthus annuus HOM05D004019 ORTHO05D005136 6.4e-38 165.2 105 78.1
AUR62038490 Chenopodium quinoa HOM05D004019 ORTHO05D005136 8.0e-33 148.3 113 69.0
Solyc08g068030.1 Solanum lycopersicum HOM05D004019 ORTHO05D005136 5.2e-32 145.6 142 53.5
PGR042G0250 Punica granatum HOM05D004019 ORTHO05D005136 1.3e-27 131.0 146 46.6
Prupe.5G112400 Prunus persica HOM05D004019 ORTHO05D005136 3.3e-26 126.3 118 56.8
Prupe.5G099400 Prunus persica HOM05D004019 ORTHO05D005136 4.3e-26 125.9 86 70.9
MD00G1060000 Malus domestica HOM05D004019 ORTHO05D005136 1.2e-23 117.9 101 66.3
MD08G1211900 Malus domestica HOM05D004019 ORTHO05D005136 1.2e-23 117.9 101 66.3
Lsat_1_v5_gn_4_165520 Lactuca sativa HOM05D004019 ORTHO05D005136 8.3e-22 111.7 140 53.6
Oeu022768.1 Olea europaea HOM05D004019 ORTHO05D005136 1.6e-20 107.5 120 49.2
Hund02993 Selenicereus undatus HOM05D004019 ORTHO05D000004 3.9e-19 102.8 80 67.5
TPR.G12424 Trifolium pratense HOM05D004019 ORTHO05D005136 9.5e-18 98.2 88 58.0
Medtr3g107940 Medicago truncatula HOM05D004019 ORTHO05D000015 4.7e-17 95.9 105 53.3
Actinidia14324 Actinidia chinensis HOM05D004019 ORTHO05D005136 8.9e-16 91.7 133 47.4
Medtr3g109982 Medicago truncatula HOM05D000051 ORTHO05D000015 4.4e-15 89.4 174 38.5
Medtr3g108370 Medicago truncatula HOM05D004019 ORTHO05D005136 1.7e-14 87.4 153 39.2
SHI11643 Sapria himalayana HOM05D004019 ORTHO05D035247 1.1e-13 84.7 82 56.1
Hund02997 Selenicereus undatus HOM05D004019 ORTHO05D005136 1.4e-13 84.3 48 89.6
Haze_21651 Corylus avellana HOM05D004019 ORTHO05D005136 1.9e-13 84.0 45 88.9
Cpa.g.sc205.23 Carica papaya HOM05D004019 ORTHO05D005136 1.6e-12 80.9 74 63.5
FvH4_2g30290 Fragaria vesca HOM05D004019 ORTHO05D035247 1.3e-11 77.8 68 64.7
FvH4_2g30421 Fragaria vesca HOM05D004019 ORTHO05D035788 1.3e-11 77.8 76 48.7
FAN24G2522 Fragaria x ananassa HOM05D004019 ORTHO05D035247 1.3e-11 77.8 68 64.7
Glyma.04G073626 Glycine max HOM05D004019 ORTHO05D005136 1.3e-11 77.8 51 76.5
Actinidia31247 Actinidia chinensis HOM05D004019 ORTHO05D005136 5.1e-11 75.9 75 53.3
Actinidia36698 Actinidia chinensis HOM05D004019 ORTHO05D005136 1.5e-10 74.3 123 42.3
Actinidia23592 Actinidia chinensis HOM05D004019 ORTHO05D005136 7.3e-10 72.0 79 60.8
Potri.018G035601 Populus trichocarpa HOM05D004019 ORTHO05D005136 4.7e-09 69.3 61 57.4
Cc08_g08790 Coffea canephora HOM05D004019 ORTHO05D005136 1.4e-08 67.8 58 55.2
Psat5g042320 Pisum sativum HOM05D000051 ORTHO05D000015 4.0e-08 66.2 82 47.6
Cc00_g28950 Coffea canephora HOM05D004019 ORTHO05D005136 5.2e-08 65.9 58 56.9
Nitab4.5_0005144g0040 Nicotiana tabacum HOM05D004019 ORTHO05D005136 5.2e-08 65.9 70 52.9
Medtr3g110010 Medicago truncatula HOM05D001346 ORTHO05D001205 8.9e-08 65.1 137 36.5


User provided reference genes

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