Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy7G01547 Aquilegia oxysepala HOM05D005658 ORTHO05D006989 1.1e-107 393.3 200 100.0
TAR383G0711 Trochodendron aralioides HOM05D005658 ORTHO05D006989 8.7e-84 313.9 195 78.5
Duzib235G1329 Durio zibethinus HOM05D005658 ORTHO05D006989 3.3e-83 312.0 195 76.9
Manes.04G130900 Manihot esculenta HOM05D005658 ORTHO05D006989 3.7e-82 308.5 194 77.3
CSS0031663 Camellia sinensis var. sinensis HOM05D005658 ORTHO05D006989 4.1e-81 305.1 191 77.5
CiPaw.01G234800 Carya illinoinensis HOM05D005658 ORTHO05D006989 4.1e-81 305.1 195 77.9
Potri.003G051700 Populus trichocarpa HOM05D005658 ORTHO05D006989 2.0e-80 302.8 195 75.4
Lj5g0010105 Lotus japonicus HOM05D005658 ORTHO05D006989 2.6e-80 302.4 195 76.4
EL10Ac9g22053 Beta vulgaris HOM05D005658 ORTHO05D006989 3.4e-80 302.0 194 76.3
GSVIVG01017054001 Vitis vinifera HOM05D005658 ORTHO05D006989 4.5e-80 301.6 191 79.1
CANSAT56G4082 Cannabis sativa HOM05D005658 ORTHO05D006989 1.0e-79 300.4 195 75.9
Thecc.06G094500 Theobroma cacao HOM05D005658 ORTHO05D006989 1.3e-79 300.1 195 74.9
Lj5g0006747 Lotus japonicus HOM05D005658 ORTHO05D006989 2.9e-79 298.9 189 77.8
Nn3g18122 Nelumbo nucifera HOM05D005658 ORTHO05D006989 2.9e-79 298.9 195 75.4
Glyma.07G018600 Glycine max HOM05D005658 ORTHO05D006989 3.8e-79 298.5 195 74.9
Actinidia08995 Actinidia chinensis HOM05D005658 ORTHO05D006989 5.0e-79 298.1 192 76.6
Gohir.A02G119700 Gossypium hirsutum HOM05D005658 ORTHO05D006989 5.0e-79 298.1 192 74.5
Prupe.3G064800 Prunus persica HOM05D005658 ORTHO05D006989 6.5e-79 297.7 193 75.6
Gohir.D03G062533 Gossypium hirsutum HOM05D005658 ORTHO05D006989 1.4e-78 296.6 189 75.7
Eucgr.J02954 Eucalyptus grandis HOM05D005658 ORTHO05D006989 2.5e-78 295.8 191 75.4
MD09G1208600 Malus domestica HOM05D005658 ORTHO05D006989 9.4e-78 293.9 194 74.7
FAN14G0081 Fragaria x ananassa HOM05D005658 ORTHO05D006989 1.2e-77 293.5 194 75.8
PGR102G0856 Punica granatum HOM05D005658 ORTHO05D006989 2.1e-77 292.7 196 73.5
arahy.Tifrunner.gnm1.ann1.5XEL3K Arachis hypogaea HOM05D005658 ORTHO05D006989 2.7e-77 292.4 198 71.7
CANSAT56G2118 Cannabis sativa HOM05D005658 ORTHO05D006989 4.6e-77 291.6 196 71.4
Gorai.003G064300 Gossypium raimondii HOM05D005658 ORTHO05D006989 4.6e-77 291.6 189 75.1
Glyma.08G203800 Glycine max HOM05D005658 ORTHO05D006989 7.9e-77 290.8 195 73.8
RcHm_v2.0_Chr2g0139251 Rosa chinensis HOM05D005658 ORTHO05D006989 7.9e-77 290.8 194 74.2
TPR.G38603 Trifolium pratense HOM05D005658 ORTHO05D006989 1.0e-76 290.4 194 73.2
FAN02G2498 Fragaria x ananassa HOM05D005658 ORTHO05D006989 3.0e-76 288.9 194 73.7
Psat7g255000 Pisum sativum HOM05D005658 ORTHO05D006989 3.9e-76 288.5 194 72.2
Solyc03g120540.3 Solanum lycopersicum HOM05D005658 ORTHO05D006989 3.9e-76 288.5 197 72.1
CAN.G438.34 Capsicum annuum HOM05D005658 ORTHO05D006989 8.8e-76 287.3 191 71.7
Haze_16346 Corylus avellana HOM05D005658 ORTHO05D006989 8.8e-76 287.3 195 72.8
Phvul.010G147700 Phaseolus vulgaris HOM05D005658 ORTHO05D006989 8.8e-76 287.3 195 73.3
FvH4_6g31890 Fragaria vesca HOM05D005658 ORTHO05D006989 1.1e-75 287.0 194 74.7
Lalb_Chr04g0262841 Lupinus albus HOM05D005658 ORTHO05D006989 1.5e-75 286.6 194 71.6
ECA234G0336 Erigeron canadensis HOM05D005658 ORTHO05D006989 2.0e-75 286.2 190 74.2
Psat5g078360 Pisum sativum HOM05D005658 ORTHO05D006989 2.0e-75 286.2 194 72.2
GSVIVG01017053001 Vitis vinifera HOM05D005658 ORTHO05D006989 2.0e-75 286.2 195 71.3
Nitab4.5_0001315g0030 Nicotiana tabacum HOM05D005658 ORTHO05D006989 4.4e-75 285.0 190 72.6
PGSC0003DMG400002629 Solanum tuberosum HOM05D005658 ORTHO05D006989 4.4e-75 285.0 191 72.3
MBI04_g04855_MAGBIO Magnolia biondii HOM05D005658 ORTHO05D006989 2.8e-74 282.3 188 73.9
Ciclev10026541m.g Citrus clementina HOM05D005658 ORTHO05D006989 3.7e-74 282.0 191 70.7
HanXRQChr10g0313501 Helianthus annuus HOM05D005658 ORTHO05D006989 3.7e-74 282.0 187 74.9
VMungo0331G1814 Vigna mungo HOM05D005658 ORTHO05D006989 4.8e-74 281.6 195 70.8
THA.LOC104817977 Tarenaya hassleriana HOM05D005658 ORTHO05D006989 6.3e-74 281.2 189 69.3
Cfa002103 Carpinus fangiana HOM05D005658 ORTHO05D006989 8.2e-74 280.8 195 71.8
SalBow7G0412 Salvia bowleyana HOM05D005658 ORTHO05D006989 8.2e-74 280.8 192 74.5
Nitab4.5_0004205g0010 Nicotiana tabacum HOM05D005658 ORTHO05D006989 1.1e-73 280.4 190 72.1
MSTRG.9467 Avicennia marina HOM05D005658 ORTHO05D006989 1.4e-73 280.0 189 70.9
CDE08G1506 Ceratophyllum demersum HOM05D005658 ORTHO05D006989 1.8e-73 279.6 187 72.2
ATR0736G109 Amborella trichopoda HOM05D005658 ORTHO05D006989 4.1e-73 278.5 192 71.4
CARHR091380 Cardamine hirsuta HOM05D005658 ORTHO05D006989 4.1e-73 278.5 195 70.8
PSO210G2136 Papaver somniferum HOM05D005658 ORTHO05D006989 4.1e-73 278.5 194 72.2
Cc04_g02920 Coffea canephora HOM05D005658 ORTHO05D006989 1.2e-72 276.9 193 71.5
Thhalv10021560m.g Eutrema salsugineum HOM05D005658 ORTHO05D006989 1.2e-72 276.9 196 69.9
AL3G28880 Arabidopsis lyrata HOM05D005658 ORTHO05D006989 1.5e-72 276.6 196 68.9
AT3G16190 Arabidopsis thaliana HOM05D005658 ORTHO05D006989 2.0e-72 276.2 196 69.4
RcHm_v2.0_Chr2g0139241 Rosa chinensis HOM05D005658 ORTHO05D006989 2.0e-72 276.2 188 73.9
SGA_v2.0_scaffold68G22977 Striga asiatica HOM05D005658 ORTHO05D006989 5.9e-72 274.6 188 72.3
Dinv38010 Davidia involucrata HOM05D005658 ORTHO05D006989 7.7e-72 274.2 169 78.1
PSO210G3060 Papaver somniferum HOM05D005658 ORTHO05D006989 7.7e-72 274.2 194 72.2
COL.COLO4_30455 Corchorus olitorius HOM05D005658 ORTHO05D006989 1.7e-71 273.1 191 69.1
DCAR_016205 Daucus carota HOM05D005658 ORTHO05D006989 1.7e-71 273.1 190 72.6
PSO421G0294 Papaver somniferum HOM05D005658 ORTHO05D006989 2.9e-71 272.3 189 72.5
Sp3g14560 Schrenkiella parvula HOM05D005658 ORTHO05D006989 2.9e-71 272.3 196 68.9
VMungo0331G0597 Vigna mungo HOM05D005658 ORTHO05D006989 6.5e-71 271.2 195 69.2
Migut.D01014 Erythranthe guttata HOM05D005658 ORTHO05D006989 1.1e-70 270.4 189 70.9
Sc12g0009500 Simmondsia chinensis HOM05D005658 ORTHO05D006989 1.4e-70 270.0 178 74.2
SalBow7G1899 Salvia bowleyana HOM05D005658 ORTHO05D006989 1.9e-70 269.6 191 69.1
BcaC09g48588 Brassica carinata HOM05D005658 ORTHO05D006989 4.2e-70 268.5 196 68.4
QL05p021437 Quercus lobata HOM05D005658 ORTHO05D006989 1.2e-69 266.9 169 76.3
arahy.Tifrunner.gnm1.ann1.JS39C6 Arachis hypogaea HOM05D005658 ORTHO05D006989 1.6e-69 266.5 195 69.7
Phvul.010G147800 Phaseolus vulgaris HOM05D005658 ORTHO05D006989 1.6e-69 266.5 195 68.7
A05p33310 Brassica napus HOM05D005658 ORTHO05D006989 4.7e-69 265.0 197 68.5
vmacro16973 Vaccinium macrocarpon HOM05D005658 ORTHO05D006989 4.7e-69 265.0 178 73.6
Gohir.D03G066800 Gossypium hirsutum HOM05D005658 ORTHO05D006989 1.8e-68 263.1 179 72.6
COL.COLO4_30457 Corchorus olitorius HOM05D005658 ORTHO05D006989 2.3e-68 262.7 167 76.6
SEGI_12338 Sequoiadendron giganteum HOM05D005658 ORTHO05D006989 2.3e-68 262.7 186 68.8
Sabra03G0027300 Salix brachista HOM05D005658 ORTHO05D006989 3.0e-68 262.3 174 75.3
Sopen03g039400 Solanum pennellii HOM05D005658 ORTHO05D006989 3.0e-68 262.3 184 71.2
unitig_746.g26661 Utricularia gibba HOM05D005658 ORTHO05D006989 3.0e-68 262.3 197 65.0
C05p50310 Brassica napus HOM05D005658 ORTHO05D006989 3.9e-68 261.9 197 67.5
PSO063G2380 Papaver somniferum HOM05D005658 ORTHO05D006989 3.9e-68 261.9 189 69.3
Ca_20421_v3 Cicer arietinum L. HOM05D005658 ORTHO05D006989 8.8e-68 260.8 169 74.6
BraA05t22156Z Brassica rapa HOM05D005658 ORTHO05D006989 3.3e-67 258.8 205 66.3
FAN05G4480 Fragaria x ananassa HOM05D005658 ORTHO05D006989 3.3e-67 258.8 174 73.6
Aa31LG8G3340 Aethionema arabicum HOM05D004680 ORTHO05D005939 7.4e-67 257.7 193 66.8
Rhsim12G0201100 Rhododendron simsii HOM05D005658 ORTHO05D006989 9.7e-67 257.3 167 75.4
Os02g0276400 Oryza sativa ssp. japonica HOM05D005658 ORTHO05D006989 1.7e-66 256.5 189 68.8
BolC5t33780H Brassica oleracea HOM05D004680 ORTHO05D005939 2.2e-66 256.1 207 64.7
Lj9A509T93 Lonicera japonica HOM05D005658 ORTHO05D006989 2.2e-66 256.1 169 76.9
Medtr4g011330 Medicago truncatula HOM05D005658 ORTHO05D006989 6.3e-66 254.6 168 73.2
Lsat_1_v5_gn_5_131001 Lactuca sativa HOM05D000012 ORTHO05D000804 3.1e-65 252.3 166 75.3
HPP92_003927 Vanilla planifolia HOM05D005658 ORTHO05D006989 5.3e-65 251.5 193 66.8
Ah.01g021740 Amaranthus hybridus HOM05D005658 ORTHO05D006989 1.6e-64 250.0 169 75.1
Migut.D01013 Erythranthe guttata HOM05D005658 ORTHO05D006989 2.0e-64 249.6 178 66.9
arahy.Tifrunner.gnm1.ann1.17ZCGM Arachis hypogaea HOM05D005658 ORTHO05D006989 2.6e-64 249.2 172 69.8
AUR62011683 Chenopodium quinoa HOM05D005658 ORTHO05D006989 2.6e-64 249.2 170 73.5
ClCG09G001890 Citrullus lanatus HOM05D005658 ORTHO05D006989 2.2e-63 246.1 194 61.3
CsaV3_7G033450 Cucumis sativus L. HOM05D005658 ORTHO05D006989 3.8e-63 245.4 188 62.2
Nitab4.5_0001968g0140 Nicotiana tabacum HOM05D005658 ORTHO05D006989 1.1e-62 243.8 191 68.1
Oeu029646.1 Olea europaea HOM05D005658 ORTHO05D006989 7.2e-62 241.1 167 70.7
MELO3C027085.2 Cucumis melo HOM05D005658 ORTHO05D006989 1.2e-61 240.4 194 61.9
Sed0023183 Sechium edule HOM05D005658 ORTHO05D006989 1.0e-60 237.3 189 59.8
COL.COLO4_18473 Corchorus olitorius HOM05D005658 ORTHO05D006989 1.4e-60 236.9 191 63.9
Carub.0003s1594 Capsella rubella HOM05D005658 ORTHO05D006989 3.0e-60 235.7 167 68.3
Ciclev10026617m.g Citrus clementina HOM05D005658 ORTHO05D006989 4.0e-60 235.3 163 66.9
AUR62016509 Chenopodium quinoa HOM05D005658 ORTHO05D006989 1.5e-59 233.4 169 66.9
Mapoly0052s0007 Marchantia polymorpha HOM05D005658 ORTHO05D006989 2.0e-59 233.0 190 59.5
AUR62016508 Chenopodium quinoa HOM05D005658 ORTHO05D006989 4.4e-59 231.9 188 65.4
Os02g0276200 Oryza sativa ssp. japonica HOM05D005658 ORTHO05D006989 9.7e-59 230.7 177 66.7
Sed0000814 Sechium edule HOM05D005658 ORTHO05D006989 1.7e-58 229.9 190 60.5
SGA_v2.0_scaffold4G02011 Striga asiatica HOM05D005658 ORTHO05D006989 2.2e-58 229.6 170 66.5
TPR.G40810 Trifolium pratense HOM05D005658 ORTHO05D006989 4.8e-58 228.4 142 78.9
Peaxi162Scf00015g00132 Petunia axillaris HOM05D005658 ORTHO05D006989 5.3e-57 224.9 195 60.0
Psat7g255080 Pisum sativum HOM05D005658 ORTHO05D006989 1.6e-56 223.4 142 76.1
SMO147G0229 Selaginella moellendorffii HOM05D005658 ORTHO05D006989 1.6e-56 223.4 185 61.1
AagrBONN_evm.TU.Sc2ySwM_369.407 Anthoceros agrestis HOM05D002948 ORTHO05D003577 2.0e-56 223.0 190 59.5
Pp3c13_4590 Physcomitrium patens HOM05D005658 ORTHO05D006989 2.5e-54 216.1 190 55.8
Psat5g078240 Pisum sativum HOM05D005658 ORTHO05D006989 2.1e-53 213.0 194 56.7
Cpa.g.sc1241.2 Carica papaya HOM05D005658 ORTHO05D006989 4.1e-49 198.7 132 72.0
CBR_g48432 Chara braunii HOM05D005658 ORTHO05D006989 4.5e-48 195.3 193 52.3
Peaxi162Scf00015g00131 Petunia axillaris HOM05D005658 ORTHO05D006989 2.3e-47 193.0 197 53.3
Haze_16345 Corylus avellana HOM05D003600 ORTHO05D004129 3.8e-47 192.2 125 76.0
Atru.chr1.3413 Acer truncatum HOM05D005658 ORTHO05D006989 7.2e-46 188.0 116 81.0
Nitab4.5_0003039g0010 Nicotiana tabacum HOM05D005658 ORTHO05D006989 4.7e-45 185.3 191 56.0
Glyma.08G203700 Glycine max HOM05D005658 ORTHO05D006989 7.0e-41 171.4 117 70.9
Manes.11G037100 Manihot esculenta HOM05D005658 ORTHO05D006989 1.2e-40 170.6 169 55.6
AUR62011684 Chenopodium quinoa HOM05D005658 ORTHO05D006989 4.5e-40 168.7 114 71.1
Cre16.g674650 Chlamydomonas reinhardtii HOM05D005658 ORTHO05D006989 2.9e-39 166.0 190 45.3
Sed0018991 Sechium edule HOM05D005658 ORTHO05D006989 3.3e-38 162.5 132 57.6
CAN.G214.3 Capsicum annuum HOM05D005658 ORTHO05D006989 2.2e-18 96.7 116 49.1
Atru.chr1.3414 Acer truncatum HOM05D005658 ORTHO05D006989 3.0e-15 86.3 52 73.1
QL02p037511 Quercus lobata HOM05D005658 ORTHO05D006989 1.9e-14 83.6 60 65.0
TPR.G1351 Trifolium pratense HOM05D005658 ORTHO05D006989 1.2e-11 74.3 59 55.9
Sopen12g022580 Solanum pennellii HOM05D005658 ORTHO05D006989 1.1e-09 67.8 168 35.1
HPP92_005057 Vanilla planifolia HOM05D006499 ORTHO05D007874 1.2e-08 64.3 178 28.7
Zm00001eb237290 Zea mays HOM05D005658 ORTHO05D006989 1.6e-08 63.9 56 57.1
DCAR_026894 Daucus carota HOM05D006499 ORTHO05D007874 1.3e-07 60.8 171 27.5
ECA236G1709 Erigeron canadensis HOM05D006499 ORTHO05D007874 1.3e-07 60.8 173 29.5
unitig_578.g16567 Utricularia gibba HOM05D006499 ORTHO05D007874 3.0e-07 59.7 170 27.6
MELO3C011747.2 Cucumis melo HOM05D000045 ORTHO05D007874 8.7e-07 58.2 169 29.0
Cre10.g448500 Chlamydomonas reinhardtii HOM05D006499 ORTHO05D007874 1.1e-06 57.8 188 28.7
Migut.H01291 Erythranthe guttata HOM05D006499 ORTHO05D007874 1.1e-06 57.8 172 27.9
CsaV3_5G006120 Cucumis sativus L. HOM05D000045 ORTHO05D007874 1.5e-06 57.4 169 29.0
Os04g0525800 Oryza sativa ssp. japonica HOM05D006499 ORTHO05D007874 1.5e-06 57.4 172 29.1
Sed0001124 Sechium edule HOM05D006499 ORTHO05D007874 1.9e-06 57.0 167 28.7
Cfa008745 Carpinus fangiana HOM05D006499 ORTHO05D007874 5.6e-06 55.5 169 27.8
Haze_11761 Corylus avellana HOM05D006499 ORTHO05D007874 5.6e-06 55.5 169 27.8
CiPaw.06G061000 Carya illinoinensis HOM05D006499 ORTHO05D007874 7.3e-06 55.1 172 26.7
Ca_05122_v3 Cicer arietinum L. HOM05D006499 ORTHO05D007874 7.3e-06 55.1 172 28.5
ClCG02G014040 Citrullus lanatus HOM05D006499 ORTHO05D007874 7.3e-06 55.1 169 28.4
Lsat_1_v5_gn_8_80081 Lactuca sativa HOM05D006499 ORTHO05D007874 9.6e-06 54.7 178 25.3


User provided reference genes

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