Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy7G01531 Aquilegia oxysepala HOM05D003951 ORTHO05D005378 0.0e+00 1963.3 991 100.0
TAR383G0035 Trochodendron aralioides HOM05D003951 ORTHO05D005378 0.0e+00 1576.2 988 78.2
GSVIVG01035648001 Vitis vinifera HOM05D003951 ORTHO05D005378 0.0e+00 1549.6 988 75.9
Nn2g11661 Nelumbo nucifera HOM05D003951 ORTHO05D005378 0.0e+00 1543.9 984 75.4
Dinv30270 Davidia involucrata HOM05D003951 ORTHO05D005378 0.0e+00 1531.5 987 75.5
Hma1.2p1_0590F.1_g185010 Hydrangea macrophylla HOM05D003951 ORTHO05D005378 0.0e+00 1506.5 986 74.3
Thecc.09G042400 Theobroma cacao HOM05D003951 ORTHO05D005378 0.0e+00 1501.9 987 74.1
Atru.chr7.2135 Acer truncatum HOM05D003951 ORTHO05D005378 0.0e+00 1500.7 985 74.0
CSS0015540 Camellia sinensis var. sinensis HOM05D003951 ORTHO05D005378 0.0e+00 1500.7 985 73.6
PSO210G7231 Papaver somniferum HOM05D003951 ORTHO05D005378 0.0e+00 1500.7 990 73.4
Cpa.g.sc7.257 Carica papaya HOM05D003951 ORTHO05D005378 0.0e+00 1499.6 983 73.2
Cfa013355 Carpinus fangiana HOM05D003951 ORTHO05D005378 0.0e+00 1498.4 983 73.6
CiPaw.08G024600 Carya illinoinensis HOM05D003951 ORTHO05D005378 0.0e+00 1498.4 984 73.9
PSO210G0075 Papaver somniferum HOM05D003951 ORTHO05D005378 0.0e+00 1498.4 990 73.2
Dinv14244 Davidia involucrata HOM05D003951 ORTHO05D005378 0.0e+00 1497.3 954 74.7
Gohir.D06G093700 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1496.5 985 73.8
Prupe.1G450600 Prunus persica HOM05D003951 ORTHO05D005378 0.0e+00 1496.5 985 73.0
Gorai.010G108200 Gossypium raimondii HOM05D003951 ORTHO05D005378 0.0e+00 1494.9 983 73.8
Duzib187G0774 Durio zibethinus HOM05D003951 ORTHO05D005378 0.0e+00 1486.1 993 73.1
Manes.03G061800 Manihot esculenta HOM05D003951 ORTHO05D005378 0.0e+00 1486.1 984 72.6
MBI04_g14936_MAGBIO Magnolia biondii HOM05D003951 ORTHO05D005378 0.0e+00 1485.7 989 72.4
Gohir.A06G094100 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1480.3 985 73.0
Gohir.D13G192700 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1469.9 986 72.2
Lalb_Chr08g0243161 Lupinus albus HOM05D003951 ORTHO05D005378 0.0e+00 1469.5 985 71.1
Potri.018G039800 Populus trichocarpa HOM05D003951 ORTHO05D005378 0.0e+00 1468.4 986 71.5
arahy.Tifrunner.gnm1.ann1.6KB6B4 Arachis hypogaea HOM05D003951 ORTHO05D005378 0.0e+00 1463.7 984 71.5
CANSAT25G2930 Cannabis sativa HOM05D003951 ORTHO05D005378 0.0e+00 1463.0 987 71.5
Gorai.013G218700 Gossypium raimondii HOM05D003951 ORTHO05D005378 0.0e+00 1463.0 986 71.9
RcHm_v2.0_Chr6g0305971 Rosa chinensis HOM05D003951 ORTHO05D005378 0.0e+00 1463.0 987 71.6
arahy.Tifrunner.gnm1.ann1.ZA6ZKK Arachis hypogaea HOM05D003951 ORTHO05D005378 0.0e+00 1462.2 984 71.3
QL12p029450 Quercus lobata HOM05D003951 ORTHO05D005378 0.0e+00 1461.4 985 72.0
Potri.006G240300 Populus trichocarpa HOM05D003951 ORTHO05D005378 0.0e+00 1459.9 987 71.6
Gohir.A13G186000 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1455.7 986 71.5
MD15G1095600 Malus domestica HOM05D003951 ORTHO05D005378 0.0e+00 1449.5 985 71.4
MD08G1115900 Malus domestica HOM05D003951 ORTHO05D005378 0.0e+00 1448.7 986 70.8
Lj1g0011830 Lotus japonicus HOM05D003951 ORTHO05D005378 0.0e+00 1448.0 986 70.7
Glyma.06G083700 Glycine max HOM05D003951 ORTHO05D005378 0.0e+00 1447.6 986 70.3
Gohir.D08G272000 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1447.6 984 72.3
Gorai.004G290400 Gossypium raimondii HOM05D003951 ORTHO05D005378 0.0e+00 1447.6 984 72.3
Sabra18G0039700 Salix brachista HOM05D003951 ORTHO05D005378 0.0e+00 1447.2 985 70.3
Lalb_Chr23g0269551 Lupinus albus HOM05D003951 ORTHO05D005378 0.0e+00 1446.0 983 70.3
Sabra06G0187900 Salix brachista HOM05D003951 ORTHO05D005378 0.0e+00 1445.6 1009 69.2
TWI32G0786 Tripterygium wilfordii HOM05D003951 ORTHO05D005378 0.0e+00 1445.6 987 69.7
Glyma.04G082000 Glycine max HOM05D003951 ORTHO05D005378 0.0e+00 1445.3 986 70.6
FvH4_2g35850 Fragaria vesca HOM05D003951 ORTHO05D005378 0.0e+00 1444.1 988 70.7
Ciclev10007348m.g Citrus clementina HOM05D003951 ORTHO05D005378 0.0e+00 1443.3 985 71.3
FAN27G3265 Fragaria x ananassa HOM05D003951 ORTHO05D005378 0.0e+00 1441.4 987 70.3
FAN20G1017 Fragaria x ananassa HOM05D003951 ORTHO05D005378 0.0e+00 1441.0 988 70.9
Cc06_g04830 Coffea canephora HOM05D003951 ORTHO05D005378 0.0e+00 1438.3 988 69.9
Medtr3g110140 Medicago truncatula HOM05D003951 ORTHO05D005378 0.0e+00 1437.9 987 70.2
FAN15G0863 Fragaria x ananassa HOM05D003951 ORTHO05D005378 0.0e+00 1437.6 988 70.4
Gohir.A08G250500 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1435.6 984 71.8
Ca_15606_v3 Cicer arietinum L. HOM05D003951 ORTHO05D005378 0.0e+00 1434.5 985 69.6
Psat5g022720 Pisum sativum HOM05D003951 ORTHO05D005378 0.0e+00 1432.2 985 69.5
Oeu038879.1 Olea europaea HOM05D003951 ORTHO05D005378 0.0e+00 1430.6 984 70.1
TPR.G1335 Trifolium pratense HOM05D003951 ORTHO05D005378 0.0e+00 1429.5 987 69.5
Migut.J00480 Erythranthe guttata HOM05D003951 ORTHO05D005378 0.0e+00 1427.2 984 69.9
EL10Ac2g04048 Beta vulgaris HOM05D003951 ORTHO05D005378 0.0e+00 1418.3 986 69.5
Nitab4.5_0010350g0010 Nicotiana tabacum HOM05D003951 ORTHO05D005378 0.0e+00 1418.3 984 68.5
Sc23g0005190 Simmondsia chinensis HOM05D003951 ORTHO05D005378 0.0e+00 1418.3 986 69.8
VMungo1309G1090 Vigna mungo HOM05D003951 ORTHO05D005378 0.0e+00 1417.1 987 69.0
vmacro10453 Vaccinium macrocarpon HOM05D003951 ORTHO05D005378 0.0e+00 1416.4 1007 70.0
Eucgr.C02905 Eucalyptus grandis HOM05D003951 ORTHO05D005378 0.0e+00 1412.5 974 68.7
Phvul.009G107800 Phaseolus vulgaris HOM05D003951 ORTHO05D005378 0.0e+00 1412.5 986 68.7
CANSAT56G2409 Cannabis sativa HOM05D003951 ORTHO05D005378 0.0e+00 1406.7 994 69.3
Thhalv10012570m.g Eutrema salsugineum HOM05D003951 ORTHO05D005378 0.0e+00 1406.3 986 68.9
PGR044G0887 Punica granatum HOM05D003951 ORTHO05D005378 0.0e+00 1406.3 985 68.1
Sp6g32040 Schrenkiella parvula HOM05D003951 ORTHO05D005378 0.0e+00 1405.6 986 68.5
Nitab4.5_0000132g0420 Nicotiana tabacum HOM05D003951 ORTHO05D005378 0.0e+00 1404.0 984 68.3
Nitab4.5_0008726g0020 Nicotiana tabacum HOM05D003951 ORTHO05D005378 0.0e+00 1404.0 984 68.4
CANSAT56G0789 Cannabis sativa HOM05D003951 ORTHO05D005378 0.0e+00 1403.7 993 69.2
MSTRG.19211 Avicennia marina HOM05D003951 ORTHO05D005378 0.0e+00 1402.9 984 68.9
Peaxi162Scf01195g00118 Petunia axillaris HOM05D003951 ORTHO05D005378 0.0e+00 1399.4 983 68.3
Hund19527 Selenicereus undatus HOM05D003951 ORTHO05D005378 0.0e+00 1398.3 987 68.2
Oeu017004.2 Olea europaea HOM05D003951 ORTHO05D005378 0.0e+00 1397.5 1079 64.8
BcaNung01934 Brassica carinata HOM05D003951 ORTHO05D005378 0.0e+00 1394.0 986 68.0
Solyc09g008610.4 Solanum lycopersicum HOM05D003951 ORTHO05D005378 0.0e+00 1391.7 984 67.8
C02p05210 Brassica napus HOM05D003951 ORTHO05D005378 0.0e+00 1391.3 985 68.1
BcaC03g13375 Brassica carinata HOM05D003951 ORTHO05D005378 0.0e+00 1390.6 985 67.8
CARHR201660 Cardamine hirsuta HOM05D003951 ORTHO05D005378 0.0e+00 1389.8 984 68.1
BcaB08g37043 Brassica carinata HOM05D003951 ORTHO05D005378 0.0e+00 1389.4 986 68.3
A10p26200 Brassica napus HOM05D003951 ORTHO05D005378 0.0e+00 1388.6 986 68.0
BolC2t06471H Brassica oleracea HOM05D003951 ORTHO05D005378 0.0e+00 1388.2 999 67.4
Sopen09g003410 Solanum pennellii HOM05D003951 ORTHO05D005378 0.0e+00 1385.9 987 67.4
PGSC0003DMG400012982 Solanum tuberosum HOM05D003951 ORTHO05D005378 0.0e+00 1385.2 984 67.5
THA.LOC104814774 Tarenaya hassleriana HOM05D003951 ORTHO05D005378 0.0e+00 1384.8 984 68.6
AL6G22230 Arabidopsis lyrata HOM05D003951 ORTHO05D005378 0.0e+00 1379.8 984 67.6
AT5G11560 Arabidopsis thaliana HOM05D003951 ORTHO05D005378 0.0e+00 1379.8 984 67.6
DCAR_004489 Daucus carota HOM05D003951 ORTHO05D005378 0.0e+00 1379.8 1078 63.5
BcaC04g19214 Brassica carinata HOM05D003951 ORTHO05D005378 0.0e+00 1378.6 987 67.5
MELO3C011151.2 Cucumis melo HOM05D003951 ORTHO05D005378 0.0e+00 1378.6 985 66.9
C09p65250 Brassica napus HOM05D003951 ORTHO05D005378 0.0e+00 1376.7 987 67.4
BraA10t44677Z Brassica rapa HOM05D003951 ORTHO05D005378 0.0e+00 1376.7 1006 66.6
Carub.0006s1003 Capsella rubella HOM05D003951 ORTHO05D005378 0.0e+00 1374.4 984 67.3
Sed0007642 Sechium edule HOM05D003951 ORTHO05D005378 0.0e+00 1373.6 987 66.9
ECA233G3193 Erigeron canadensis HOM05D003951 ORTHO05D005378 0.0e+00 1372.8 955 68.9
CsaV3_2G030980 Cucumis sativus L. HOM05D003951 ORTHO05D005378 0.0e+00 1371.7 987 66.9
Sed0024259 Sechium edule HOM05D003951 ORTHO05D005378 0.0e+00 1370.9 987 66.7
ClCG08G012310 Citrullus lanatus HOM05D003951 ORTHO05D005378 0.0e+00 1370.5 991 66.4
HanXRQChr08g0221151 Helianthus annuus HOM05D003951 ORTHO05D005378 0.0e+00 1368.6 988 68.5
ATR0315G102 Amborella trichopoda HOM05D003951 ORTHO05D005378 0.0e+00 1365.5 987 67.3
SGA_v2.0_scaffold657G53382 Striga asiatica HOM05D003951 ORTHO05D005378 0.0e+00 1365.1 988 66.8
BolC9t59353H Brassica oleracea HOM05D003951 ORTHO05D005378 0.0e+00 1360.9 1013 65.6
SalBow3G1921 Salvia bowleyana HOM05D003951 ORTHO05D005378 0.0e+00 1357.8 985 66.9
Lsat_1_v5_gn_6_63741 Lactuca sativa HOM05D003951 ORTHO05D005378 0.0e+00 1349.7 1015 65.1
CAN.G1759.1 Capsicum annuum HOM05D003951 ORTHO05D005378 0.0e+00 1349.0 953 67.7
CDE09G1231 Ceratophyllum demersum HOM05D003951 ORTHO05D005378 0.0e+00 1346.3 977 66.4
COL.COLO4_18674 Corchorus olitorius HOM05D003951 ORTHO05D005378 0.0e+00 1342.0 900 72.2
AUR62043518 Chenopodium quinoa HOM05D003951 ORTHO05D005378 0.0e+00 1341.6 986 66.2
AUR62041721 Chenopodium quinoa HOM05D003951 ORTHO05D005378 0.0e+00 1339.7 986 66.0
BraA02t05087Z Brassica rapa HOM05D003951 ORTHO05D005378 0.0e+00 1326.2 1001 64.8
Os05g0230600 Oryza sativa ssp. japonica HOM05D003951 ORTHO05D005378 0.0e+00 1310.0 970 64.1
AUR62009306 Chenopodium quinoa HOM05D003951 ORTHO05D005378 0.0e+00 1298.9 986 64.3
Lj8A588G18 Lonicera japonica HOM05D003951 ORTHO05D005378 0.0e+00 1287.7 968 65.1
Zm00001eb350390 Zea mays HOM05D003951 ORTHO05D005378 0.0e+00 1284.6 979 63.3
A02p01070 Brassica napus HOM05D003951 ORTHO05D005378 0.0e+00 1271.5 986 63.4
Zm00001eb284300 Zea mays HOM05D003951 ORTHO05D005378 0.0e+00 1266.9 979 62.8
Aa31LG3G15640 Aethionema arabicum HOM05D003951 ORTHO05D005378 0.0e+00 1261.1 984 63.3
Ah.16g105420 Amaranthus hybridus HOM05D003951 ORTHO05D005378 0.0e+00 1260.0 1014 61.8
Nitab4.5_0004281g0080 Nicotiana tabacum HOM05D003951 ORTHO05D005378 0.0e+00 1250.7 897 67.2
Medtr3g110090 Medicago truncatula HOM05D003951 ORTHO05D005378 0.0e+00 1218.4 847 68.8
CDE02G1137 Ceratophyllum demersum HOM05D003951 ORTHO05D005378 0.0e+00 1184.1 952 62.0
Ah.10g035090 Amaranthus hybridus HOM05D003951 ORTHO05D005378 0.0e+00 1172.1 847 66.0
SGA_v2.0_scaffold40G15445 Striga asiatica HOM05D003951 ORTHO05D005378 0.0e+00 1151.7 881 63.6
SHI18663 Sapria himalayana HOM05D003951 ORTHO05D005378 0.0e+00 1104.4 809 65.8
Pp3c24_6940 Physcomitrium patens HOM05D003951 ORTHO05D005378 1.7e-300 1036.2 976 53.3
Mapoly0001s0045 Marchantia polymorpha HOM05D003951 ORTHO05D005378 2.2e-300 1035.8 978 53.7
Haze_16526 Corylus avellana HOM05D003951 ORTHO05D005378 3.6e-271 938.7 658 69.0
Ah.16g105540 Amaranthus hybridus HOM05D003951 ORTHO05D005378 3.9e-257 892.1 689 62.0
SMO361G0709 Selaginella moellendorffii HOM05D003951 ORTHO05D005378 8.6e-257 891.0 954 48.3
Actinidia14667 Actinidia chinensis HOM05D003951 ORTHO05D005378 1.1e-254 884.0 541 77.6
Lj7A704G78 Lonicera japonica HOM05D003951 ORTHO05D005378 1.6e-234 817.0 658 61.6
AagrBONN_evm.TU.Sc2ySwM_228.1359 Anthoceros agrestis HOM05D003951 ORTHO05D005378 3.1e-214 749.6 867 44.5
Ah.16g105530 Amaranthus hybridus HOM05D003951 ORTHO05D005378 6.4e-212 741.9 529 67.9
Actinidia15735 Actinidia chinensis HOM05D003951 ORTHO05D005378 6.1e-194 682.2 809 47.7
TAR626G1339 Trochodendron aralioides HOM05D003951 ORTHO05D005378 4.8e-175 619.4 362 81.2
HPP92_003925 Vanilla planifolia HOM05D003951 ORTHO05D005378 3.3e-168 596.7 916 40.1
Actinidia14668 Actinidia chinensis HOM05D003951 ORTHO05D005378 1.5e-152 544.7 421 63.4
Haze_16527 Corylus avellana HOM05D003951 ORTHO05D005378 1.3e-143 515.0 296 83.1
Lj7C704T11 Lonicera japonica HOM05D003951 ORTHO05D005378 1.2e-141 508.4 296 81.4
CBR_g46228 Chara braunii HOM05D000019 ORTHO05D000048 5.2e-137 493.0 868 35.3
Gohir.A08G250566 Gossypium hirsutum HOM05D003951 ORTHO05D005378 3.4e-136 490.3 282 83.0
TAR626G1232 Trochodendron aralioides HOM05D003951 ORTHO05D005378 2.7e-125 454.1 335 65.4
TAR626G0188 Trochodendron aralioides HOM05D003951 ORTHO05D005378 3.9e-124 450.3 256 86.3
PRCOL_00001466 Prasinoderma coloniale HOM05D003951 ORTHO05D005378 9.2e-118 429.1 1038 30.3
Cre01.g042550 Chlamydomonas reinhardtii HOM05D003951 ORTHO05D005378 2.1e-106 391.3 1013 31.2
vmacro07087 Vaccinium macrocarpon HOM05D003951 ORTHO05D005378 3.1e-105 387.5 663 39.5
unitig_22.g5110 Utricularia gibba HOM05D003951 ORTHO05D020105 5.3e-89 333.6 380 45.3
Hma1.2p1_1163F.1_g262790 Hydrangea macrophylla HOM05D003951 ORTHO05D005378 1.4e-86 325.5 319 50.2
MCO05G363 Micromonas commoda HOM05D003951 ORTHO05D005378 2.7e-85 321.2 428 41.6
Actinidia13321 Actinidia chinensis HOM05D003951 ORTHO05D005378 1.4e-81 308.9 257 58.4
Psat2g043440 Pisum sativum HOM05D003951 ORTHO05D005378 1.0e-76 292.7 362 43.1
Lj6g0012970 Lotus japonicus HOM05D003951 ORTHO05D006115 7.4e-67 260.0 276 50.0
Nn3g18131 Nelumbo nucifera HOM05D003951 ORTHO05D005378 1.7e-58 232.3 147 79.6
CBR_g46226 Chara braunii HOM05D003951 ORTHO05D005378 1.7e-55 222.2 184 57.6
Actinidia31233 Actinidia chinensis HOM05D006865 ORTHO05D009005 1.4e-52 212.6 139 69.8
BcaB01g05473 Brassica carinata HOM05D003951 ORTHO05D005378 5.2e-52 210.7 129 74.4
C03p05840 Brassica napus HOM05D003951 ORTHO05D005378 5.7e-51 207.2 125 76.0
DCAR_004486 Daucus carota HOM05D003951 ORTHO05D035008 2.2e-47 195.3 105 87.6
BolC3t13096H Brassica oleracea HOM05D003951 ORTHO05D005378 6.5e-47 193.7 125 72.8
Cfa023291 Carpinus fangiana HOM05D003951 ORTHO05D005378 2.7e-45 188.3 1021 23.0
Peaxi162Scf00110g00822 Petunia axillaris HOM05D003951 ORTHO05D005378 3.5e-40 171.4 203 50.7
BolC3t13097H Brassica oleracea HOM05D003951 ORTHO05D020105 4.7e-37 161.0 107 70.1
BcaB01g05472 Brassica carinata HOM05D003951 ORTHO05D020105 1.0e-36 159.8 107 70.1
C03p05850 Brassica napus HOM05D003951 ORTHO05D020105 1.0e-36 159.8 107 70.1
Hma1.2p1_1163F.1_g262780 Hydrangea macrophylla HOM05D003951 ORTHO05D033496 1.8e-28 132.5 85 74.1
Peaxi162Scf00110g00821 Petunia axillaris HOM05D003951 ORTHO05D035008 6.2e-21 107.5 82 61.0
Dinv34398 Davidia involucrata HOM05D003951 ORTHO05D005378 1.4e-20 106.3 63 76.2
Nn3g18130 Nelumbo nucifera HOM05D003951 ORTHO05D020105 6.8e-20 104.0 72 72.2
TAR629G0021 Trochodendron aralioides HOM05D003951 ORTHO05D000285 6.8e-20 104.0 178 37.6
A03p05100 Brassica napus HOM05D003951 ORTHO05D033496 2.6e-19 102.1 121 50.4
BraA03t09844Z Brassica rapa HOM05D003951 ORTHO05D033496 2.6e-19 102.1 121 50.4
EL10Ac6g13930 Beta vulgaris HOM05D001881 ORTHO05D001856 3.4e-19 101.7 62 74.2
CiPaw.07G205600 Carya illinoinensis HOM05D003951 ORTHO05D005378 7.5e-19 100.5 81 55.6
Ah.04g155890 Amaranthus hybridus HOM05D003518 ORTHO05D031015 4.9e-18 97.8 60 75.0
CiPaw.07G205500 Carya illinoinensis HOM05D003951 ORTHO05D020105 6.4e-18 97.4 70 68.6
CAN.G541.23 Capsicum annuum HOM05D004796 ORTHO05D006527 7.1e-17 94.0 53 77.4
Peaxi162Scf00110g00823 Petunia axillaris HOM05D003951 ORTHO05D305850 7.1e-17 94.0 122 43.4
Ah.05g173020 Amaranthus hybridus HOM05D003951 ORTHO05D031015 2.7e-16 92.0 60 71.7
Ah.05g172920 Amaranthus hybridus HOM05D003951 ORTHO05D031015 1.0e-15 90.1 60 70.0
SHI18664 Sapria himalayana HOM05D003951 ORTHO05D020105 3.0e-15 88.6 140 40.0
Psat6g121680 Pisum sativum HOM05D000840 ORTHO05D000670 5.6e-14 84.3 47 76.6
Psat0s4854g0040 Pisum sativum HOM05D001108 ORTHO05D001619 5.1e-07 61.2 121 29.8
Psat1g107320 Pisum sativum HOM05D001108 ORTHO05D001619 8.6e-07 60.5 115 29.6
Ah.04g157730 Amaranthus hybridus HOM05D031501 ORTHO05D060762 3.3e-06 58.5 37 73.0


User provided reference genes

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