Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy7G01528 Aquilegia oxysepala HOM05D004680 ORTHO05D005939 8.4e-265 916.4 434 100.0
Dinv30468 Davidia involucrata HOM05D004680 ORTHO05D005939 9.1e-211 736.9 435 81.4
TAR383G0102 Trochodendron aralioides HOM05D004680 ORTHO05D005939 5.9e-210 734.2 433 80.6
Nn3g18134 Nelumbo nucifera HOM05D004680 ORTHO05D005939 3.2e-208 728.4 435 80.5
Hma1.2p1_1262F.1_g271230 Hydrangea macrophylla HOM05D004680 ORTHO05D005939 6.1e-207 724.2 434 79.3
Peaxi162Scf00015g00135 Petunia axillaris HOM05D004680 ORTHO05D005939 3.3e-205 718.4 435 77.9
CSS0039709 Camellia sinensis var. sinensis HOM05D004680 ORTHO05D005939 1.3e-204 716.5 437 77.6
Nn2g11656 Nelumbo nucifera HOM05D004680 ORTHO05D005939 3.1e-203 711.8 398 82.9
Nitab4.5_0000351g0010 Nicotiana tabacum HOM05D004680 ORTHO05D005939 3.5e-202 708.4 437 76.7
CSS0028346 Camellia sinensis var. sinensis HOM05D004680 ORTHO05D005939 5.9e-202 707.6 434 77.6
Cc04_g02880 Coffea canephora HOM05D004680 ORTHO05D005939 5.9e-202 707.6 440 76.1
Solyc03g120490.3 Solanum lycopersicum HOM05D004680 ORTHO05D005939 1.7e-201 706.1 435 76.8
Nitab4.5_0009963g0010 Nicotiana tabacum HOM05D004680 ORTHO05D005939 3.8e-201 704.9 435 77.0
Sopen03g039370 Solanum pennellii HOM05D004680 ORTHO05D005939 3.8e-201 704.9 435 76.6
Nitab4.5_0006985g0040 Nicotiana tabacum HOM05D004680 ORTHO05D005939 1.9e-200 702.6 444 75.0
PGSC0003DMG400002632 Solanum tuberosum HOM05D004680 ORTHO05D005939 2.5e-200 702.2 435 76.3
MSTRG.22656 Avicennia marina HOM05D004680 ORTHO05D005939 3.2e-200 701.8 442 74.7
GSVIVG01017045001 Vitis vinifera HOM05D004680 ORTHO05D005939 4.7e-199 698.0 434 76.3
Cpa.g.sc109.43 Carica papaya HOM05D004680 ORTHO05D005939 1.8e-198 696.0 435 75.6
vmacro18875 Vaccinium macrocarpon HOM05D004680 ORTHO05D005939 3.0e-198 695.3 441 76.0
Migut.I00930 Erythranthe guttata HOM05D004680 ORTHO05D005939 4.0e-198 694.9 443 74.5
PSO566G0328 Papaver somniferum HOM05D004680 ORTHO05D005939 1.2e-197 693.3 449 73.9
Cfa002107 Carpinus fangiana HOM05D004680 ORTHO05D005939 1.5e-197 693.0 444 74.5
Rhsim08G0225100 Rhododendron simsii HOM05D004680 ORTHO05D005939 2.0e-197 692.6 441 77.1
TWI75G1773 Tripterygium wilfordii HOM05D004680 ORTHO05D005939 2.6e-197 692.2 447 74.0
SalBow2G2497 Salvia bowleyana HOM05D004680 ORTHO05D005939 3.3e-197 691.8 438 74.0
SGA_v2.0_scaffold69G23355 Striga asiatica HOM05D004680 ORTHO05D005939 3.3e-197 691.8 444 74.3
Migut.D01009 Erythranthe guttata HOM05D004680 ORTHO05D005939 2.2e-196 689.1 428 75.7
AUR62031868 Chenopodium quinoa HOM05D004680 ORTHO05D005939 2.4e-195 685.6 419 76.1
Sc12g0009530 Simmondsia chinensis HOM05D004680 ORTHO05D005939 3.1e-195 685.3 437 73.5
PSO782G2876 Papaver somniferum HOM05D004680 ORTHO05D005939 1.2e-194 683.3 449 72.8
TPR.G37217 Trifolium pratense HOM05D004680 ORTHO05D005939 1.6e-194 682.9 440 75.5
RcHm_v2.0_Chr2g0139361 Rosa chinensis HOM05D004680 ORTHO05D005939 2.7e-194 682.2 440 75.0
Duzib192G0285 Durio zibethinus HOM05D004680 ORTHO05D005939 7.7e-194 680.6 411 77.4
Manes.11G036700 Manihot esculenta HOM05D004680 ORTHO05D005939 7.7e-194 680.6 440 73.6
Ah.01g021760 Amaranthus hybridus HOM05D004680 ORTHO05D005939 2.2e-193 679.1 430 73.0
AL3G28890 Arabidopsis lyrata HOM05D004680 ORTHO05D005939 5.0e-193 677.9 438 73.5
AUR62016515 Chenopodium quinoa HOM05D004680 ORTHO05D005939 5.0e-193 677.9 422 74.9
FAN09G3354 Fragaria x ananassa HOM05D004680 ORTHO05D005939 5.0e-193 677.9 436 73.9
Thecc.06G095100 Theobroma cacao HOM05D004680 ORTHO05D005939 5.0e-193 677.9 418 75.8
EL10Ac9g22049 Beta vulgaris HOM05D004680 ORTHO05D005939 1.1e-192 676.8 422 74.4
Glyma.15G017600 Glycine max HOM05D004680 ORTHO05D005939 1.1e-192 676.8 442 73.8
HanXRQChr02g0032341 Helianthus annuus HOM05D004680 ORTHO05D005939 1.1e-192 676.8 437 74.1
Thhalv10020703m.g Eutrema salsugineum HOM05D004680 ORTHO05D005939 1.9e-192 676.0 437 72.3
Medtr2g101480 Medicago truncatula HOM05D004680 ORTHO05D005939 1.9e-192 676.0 441 73.7
ClCG07G013200 Citrullus lanatus HOM05D004680 ORTHO05D005939 2.5e-192 675.6 440 74.3
Carub.0003s1595 Capsella rubella HOM05D004680 ORTHO05D005939 3.2e-192 675.2 436 72.9
FvH4_6g31940 Fragaria vesca HOM05D004680 ORTHO05D005939 3.2e-192 675.2 436 74.1
SalBow7G2677 Salvia bowleyana HOM05D004680 ORTHO05D005939 3.2e-192 675.2 413 76.0
Sp3g14570 Schrenkiella parvula HOM05D004680 ORTHO05D005939 3.2e-192 675.2 438 72.8
Ca_01140_v3 Cicer arietinum L. HOM05D004680 ORTHO05D005939 4.2e-192 674.9 449 73.5
THA.LOC104817975 Tarenaya hassleriana HOM05D004680 ORTHO05D005939 5.5e-192 674.5 446 71.7
AT3G16200 Arabidopsis thaliana HOM05D004680 ORTHO05D005939 7.2e-192 674.1 438 72.8
Sabra01G0153900 Salix brachista HOM05D004680 ORTHO05D005939 7.2e-192 674.1 437 73.9
Sed0009248 Sechium edule HOM05D004680 ORTHO05D005939 1.2e-191 673.3 436 74.5
THA.LOC104815523 Tarenaya hassleriana HOM05D004680 ORTHO05D005939 1.2e-191 673.3 412 76.9
CiPaw.02G147900 Carya illinoinensis HOM05D004680 ORTHO05D005939 1.6e-191 672.9 441 73.2
MSTRG.9470 Avicennia marina HOM05D004680 ORTHO05D005939 2.1e-191 672.5 444 72.5
CANSAT56G3143 Cannabis sativa HOM05D004680 ORTHO05D005939 2.1e-191 672.5 442 73.1
Hund06644 Selenicereus undatus HOM05D004680 ORTHO05D005939 3.6e-191 671.8 435 71.7
TWI12G0154 Tripterygium wilfordii HOM05D004680 ORTHO05D005939 3.6e-191 671.8 447 72.9
Phvul.005G169700 Phaseolus vulgaris HOM05D004680 ORTHO05D005939 4.7e-191 671.4 446 73.1
QL05p021321 Quercus lobata HOM05D004680 ORTHO05D005939 4.7e-191 671.4 396 78.8
CsaV3_3G023810 Cucumis sativus L. HOM05D004680 ORTHO05D005939 6.1e-191 671.0 438 74.0
Glyma.13G356500 Glycine max HOM05D004680 ORTHO05D005939 6.1e-191 671.0 443 72.7
Oeu050619.1 Olea europaea HOM05D004680 ORTHO05D005939 6.1e-191 671.0 514 64.8
MELO3C012983.2 Cucumis melo HOM05D004680 ORTHO05D005939 3.0e-190 668.7 440 73.9
CARHR091390 Cardamine hirsuta HOM05D004680 ORTHO05D005939 4.0e-190 668.3 437 72.5
Lsat_1_v5_gn_1_34800 Lactuca sativa HOM05D004680 ORTHO05D005939 6.8e-190 667.5 430 75.8
PGR102G2014 Punica granatum HOM05D004680 ORTHO05D005939 6.8e-190 667.5 441 71.2
Eucgr.F03051 Eucalyptus grandis HOM05D004680 ORTHO05D005939 8.8e-190 667.2 454 71.8
Potri.003G051200 Populus trichocarpa HOM05D004680 ORTHO05D005939 1.2e-189 666.8 433 72.1
C05p50300 Brassica napus HOM05D004680 ORTHO05D005939 1.5e-189 666.4 439 72.9
DCAR_023071 Daucus carota HOM05D004680 ORTHO05D005939 3.4e-189 665.2 441 71.7
Gorai.009G136000 Gossypium raimondii HOM05D004680 ORTHO05D005939 3.4e-189 665.2 412 75.5
SGA_v2.0_scaffold4G02014 Striga asiatica HOM05D004680 ORTHO05D005939 4.4e-189 664.8 440 73.0
Sed0024237 Sechium edule HOM05D004680 ORTHO05D005939 5.7e-189 664.5 435 73.8
A05p33300 Brassica napus HOM05D004680 ORTHO05D005939 7.5e-189 664.1 439 72.4
BraA05t22155Z Brassica rapa HOM05D004680 ORTHO05D005939 7.5e-189 664.1 439 72.2
Sabra03G0027900 Salix brachista HOM05D004680 ORTHO05D005939 7.5e-189 664.1 436 72.9
CDE02G3046 Ceratophyllum demersum HOM05D004680 ORTHO05D005939 9.8e-189 663.7 432 71.1
Duzib235G0372 Durio zibethinus HOM05D004680 ORTHO05D005939 9.8e-189 663.7 412 76.0
Prupe.3G064100 Prunus persica HOM05D004680 ORTHO05D005939 9.8e-189 663.7 443 72.0
Gohir.A05G127800 Gossypium hirsutum HOM05D004680 ORTHO05D005939 1.3e-188 663.3 412 75.5
MD09G1207900 Malus domestica HOM05D004680 ORTHO05D005939 1.3e-188 663.3 440 71.8
Gohir.D10G069100 Gossypium hirsutum HOM05D004680 ORTHO05D005939 1.7e-188 662.9 412 75.7
Nitab4.5_0011578g0010 Nicotiana tabacum HOM05D004680 ORTHO05D005939 2.8e-188 662.1 439 72.4
Lj3g0026249 Lotus japonicus HOM05D004680 ORTHO05D005939 3.7e-188 661.8 442 72.6
Ciclev10025565m.g Citrus clementina HOM05D004680 ORTHO05D005939 4.8e-188 661.4 444 70.7
Potri.001G186200 Populus trichocarpa HOM05D004680 ORTHO05D005939 6.3e-188 661.0 437 72.3
BcaC09g48589 Brassica carinata HOM05D004680 ORTHO05D005939 1.1e-187 660.2 437 72.3
A01p37900 Brassica napus HOM05D004680 ORTHO05D005939 1.4e-187 659.8 438 72.1
BraA01t03850Z Brassica rapa HOM05D004680 ORTHO05D005939 1.4e-187 659.8 438 72.1
Gorai.011G073000 Gossypium raimondii HOM05D004680 ORTHO05D005939 5.4e-187 657.9 412 75.2
Lalb_Chr22g0351431 Lupinus albus HOM05D004680 ORTHO05D005939 9.1e-187 657.1 447 71.1
C01p48080 Brassica napus HOM05D004680 ORTHO05D005939 1.2e-186 656.8 438 72.1
Peaxi162Scf00207g01238 Petunia axillaris HOM05D004680 ORTHO05D005939 1.2e-186 656.8 433 73.2
MBI04_g14933_MAGBIO Magnolia biondii HOM05D004680 ORTHO05D005939 1.6e-186 656.4 397 76.8
BolC1t04776H Brassica oleracea HOM05D004680 ORTHO05D005939 5.9e-186 654.4 438 71.9
BolC5t33780H Brassica oleracea HOM05D004680 ORTHO05D005939 7.7e-186 654.1 434 72.4
FAN14G5860 Fragaria x ananassa HOM05D004680 ORTHO05D005939 1.0e-185 653.7 452 70.4
Gohir.A10G067300 Gossypium hirsutum HOM05D004680 ORTHO05D005939 1.3e-185 653.3 412 75.2
arahy.Tifrunner.gnm1.ann1.0TRA3C Arachis hypogaea HOM05D004680 ORTHO05D005939 1.1e-184 650.2 366 80.9
arahy.Tifrunner.gnm1.ann1.I8Y04W Arachis hypogaea HOM05D004680 ORTHO05D005939 2.5e-184 649.0 366 80.9
Lalb_Chr24g0395991 Lupinus albus HOM05D004680 ORTHO05D005939 4.2e-184 648.3 448 70.1
VMungo1080G0622 Vigna mungo HOM05D004680 ORTHO05D005939 1.6e-183 646.4 479 67.2
MD17G1189000 Malus domestica HOM05D004680 ORTHO05D005939 4.7e-183 644.8 439 70.2
Lalb_Chr14g0373141 Lupinus albus HOM05D004680 ORTHO05D005939 6.1e-183 644.4 441 71.0
ECA247G0440 Erigeron canadensis HOM05D004680 ORTHO05D005939 8.0e-183 644.0 432 71.8
ATR0315G163 Amborella trichopoda HOM05D004680 ORTHO05D005939 6.8e-182 641.0 390 76.4
Aa31LG8G3340 Aethionema arabicum HOM05D004680 ORTHO05D005939 3.4e-181 638.6 431 70.5
Actinidia32715 Actinidia chinensis HOM05D004680 ORTHO05D005939 2.2e-180 636.0 429 73.0
unitig_899.g14773 Utricularia gibba HOM05D004680 ORTHO05D005939 5.4e-179 631.3 417 70.5
Atru.BG.177.p Acer truncatum HOM05D004680 ORTHO05D005939 1.9e-171 606.3 322 84.8
SGA_v2.0_scaffold5G02541 Striga asiatica HOM05D004680 ORTHO05D005939 3.2e-171 605.5 443 67.7
Manes.04G131400 Manihot esculenta HOM05D004680 ORTHO05D005939 7.0e-171 604.4 441 67.1
HPP92_021671 Vanilla planifolia HOM05D004680 ORTHO05D005939 7.0e-171 604.4 428 66.8
Lsat_1_v5_gn_4_101400 Lactuca sativa HOM05D004680 ORTHO05D005939 4.6e-170 601.7 430 67.9
QL11p016400 Quercus lobata HOM05D004680 ORTHO05D005939 1.3e-169 600.1 322 85.1
Actinidia21693 Actinidia chinensis HOM05D004680 ORTHO05D005939 3.9e-169 598.6 343 81.6
Zm00001eb270670 Zea mays HOM05D004680 ORTHO05D005939 8.6e-161 570.9 416 66.1
SEGI_20570 Sequoiadendron giganteum HOM05D004680 ORTHO05D005939 5.2e-158 561.6 384 66.1
Dinv38006 Davidia involucrata HOM05D004680 ORTHO05D005939 6.0e-154 548.1 343 77.8
FAN05G4921 Fragaria x ananassa HOM05D004680 ORTHO05D005939 6.0e-154 548.1 289 84.4
Psat5g297320 Pisum sativum HOM05D004680 ORTHO05D005939 1.0e-153 547.4 289 83.7
CiPaw.01G234300 Carya illinoinensis HOM05D004680 ORTHO05D005939 2.3e-153 546.2 289 83.7
SHI25904 Sapria himalayana HOM05D004680 ORTHO05D005939 1.1e-144 517.3 286 80.1
SMO147G0400 Selaginella moellendorffii HOM05D004680 ORTHO05D005939 1.8e-142 510.0 334 66.5
Hma1.2p1_1617F.1_g293780 Hydrangea macrophylla HOM05D004680 ORTHO05D005939 6.9e-142 508.1 393 66.4
COL.COLO4_30464 Corchorus olitorius HOM05D004680 ORTHO05D005939 7.6e-141 504.6 266 84.6
Haze_16340 Corylus avellana HOM05D004680 ORTHO05D005939 1.4e-126 457.2 306 73.2
Pp3c17_20690 Physcomitrium patens HOM05D004680 ORTHO05D005939 1.6e-122 443.7 349 57.0
Sc12g0009700 Simmondsia chinensis HOM05D004680 ORTHO05D005939 1.1e-120 437.6 301 70.1
AagrBONN_evm.TU.Sc2ySwM_369.193 Anthoceros agrestis HOM05D004680 ORTHO05D005939 2.8e-119 433.0 285 67.4
Gohir.D05G132300 Gossypium hirsutum HOM05D004680 ORTHO05D005939 5.0e-116 422.2 275 73.8
SMO358G0106 Selaginella moellendorffii HOM05D004680 ORTHO05D005939 3.6e-106 389.4 339 50.4
SMO077G0005 Selaginella moellendorffii HOM05D004680 ORTHO05D005939 1.1e-96 357.8 318 52.2
HPP92_008141 Vanilla planifolia HOM05D004680 ORTHO05D005939 4.5e-93 345.9 274 65.0
SMO114G0076 Selaginella moellendorffii HOM05D004680 ORTHO05D005939 3.7e-87 326.2 338 46.4
Oeu063940.2 Olea europaea HOM05D004680 ORTHO05D007319 3.0e-65 253.4 179 67.0
Haze_11589 Corylus avellana HOM05D004680 ORTHO05D005939 4.4e-64 249.6 137 79.6
TWI75G1313 Tripterygium wilfordii HOM05D004680 ORTHO05D005939 2.2e-55 220.7 109 89.0
PGSC0003DMG400007734 Solanum tuberosum HOM05D004680 ORTHO05D005939 1.6e-53 214.5 122 79.5
HPP92_008142 Vanilla planifolia HOM05D004680 ORTHO05D005939 3.9e-52 209.9 119 75.6
SEGI_33813 Sequoiadendron giganteum HOM05D004680 ORTHO05D005939 2.2e-47 194.1 137 64.2
Oeu040360.1 Olea europaea HOM05D004680 ORTHO05D011268 1.2e-45 188.3 127 69.3
Hma1.2p1_1576F.1_g291660 Hydrangea macrophylla HOM05D004680 ORTHO05D005939 1.1e-33 148.7 85 81.2
Hma1.2p1_0033F.1_g020650 Hydrangea macrophylla HOM05D004680 ORTHO05D005939 3.1e-33 147.1 85 80.0
Zm00001eb389580 Zea mays HOM05D004680 ORTHO05D000383 1.1e-27 128.6 80 71.2
Atru.chr1.3422 Acer truncatum HOM05D004680 ORTHO05D005939 1.8e-25 121.3 101 58.4
Solyc07g014600.2 Solanum lycopersicum HOM05D004680 ORTHO05D005939 3.0e-12 77.4 52 67.3
HanXRQChr10g0311001 Helianthus annuus HOM05D004680 ORTHO05D005939 8.1e-10 69.3 118 42.4


User provided reference genes

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