Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy7G01425 Aquilegia oxysepala HOM05D005212 ORTHO05D006353 1.0e-207 726.5 370 100.0
Nn3g18288 Nelumbo nucifera HOM05D005212 ORTHO05D006353 7.2e-108 394.8 324 64.5
Manes.17G080300 Manihot esculenta HOM05D005212 ORTHO05D006353 1.2e-107 394.0 329 63.8
CSS0012951 Camellia sinensis var. sinensis HOM05D005212 ORTHO05D006353 2.2e-104 383.3 326 61.0
Prupe.8G002300 Prunus persica HOM05D005212 ORTHO05D006353 6.3e-104 381.7 327 62.4
GSVIVG01023834001 Vitis vinifera HOM05D005212 ORTHO05D006353 8.3e-104 381.3 330 62.7
TWI60G0083 Tripterygium wilfordii HOM05D005212 ORTHO05D006353 1.2e-102 377.5 325 64.9
Potri.001G461100 Populus trichocarpa HOM05D005212 ORTHO05D006353 4.5e-102 375.6 329 61.7
RcHm_v2.0_Chr3g0448371 Rosa chinensis HOM05D005212 ORTHO05D006353 5.9e-102 375.2 329 61.1
CiPaw.05G194300 Carya illinoinensis HOM05D005212 ORTHO05D006353 5.0e-101 372.1 326 61.7
Prupe.1G329700 Prunus persica HOM05D005212 ORTHO05D006353 6.5e-101 371.7 328 61.0
Solyc04g007850.3 Solanum lycopersicum HOM05D005212 ORTHO05D006353 1.1e-100 370.9 326 59.8
Sopen04g002980 Solanum pennellii HOM05D005212 ORTHO05D006353 1.9e-100 370.2 326 59.8
Peaxi162Scf00723g00423 Petunia axillaris HOM05D005212 ORTHO05D006353 3.2e-100 369.4 336 59.2
FvH4_4g34100 Fragaria vesca HOM05D005212 ORTHO05D006353 5.5e-100 368.6 329 61.1
Ciclev10017606m.g Citrus clementina HOM05D005212 ORTHO05D006353 1.6e-99 367.1 313 63.9
RcHm_v2.0_Chr4g0443611 Rosa chinensis HOM05D005212 ORTHO05D006353 1.6e-99 367.1 330 60.3
GSVIVG01011709001 Vitis vinifera HOM05D005212 ORTHO05D006353 1.0e-98 364.4 341 59.8
Gohir.D09G202000 Gossypium hirsutum HOM05D005212 ORTHO05D006353 4.0e-98 362.5 323 59.1
Gorai.006G225800 Gossypium raimondii HOM05D005212 ORTHO05D006353 8.8e-98 361.3 323 59.1
Gohir.D13G128200 Gossypium hirsutum HOM05D005212 ORTHO05D006353 1.5e-97 360.5 323 58.8
Lj4g0012207 Lotus japonicus HOM05D005212 ORTHO05D006353 1.5e-97 360.5 332 60.2
Atru.chr12.1198 Acer truncatum HOM05D005212 ORTHO05D006353 3.4e-97 359.4 316 60.8
Gorai.013G143600 Gossypium raimondii HOM05D005212 ORTHO05D006353 4.4e-97 359.0 323 58.5
Gohir.A09G208525 Gossypium hirsutum HOM05D005212 ORTHO05D006353 5.7e-97 358.6 328 59.1
Ciclev10028815m.g Citrus clementina HOM05D005212 ORTHO05D006353 7.5e-97 358.2 315 61.3
Rhsim09G0094100 Rhododendron simsii HOM05D005212 ORTHO05D006353 7.5e-97 358.2 326 59.8
CAN.G458.6 Capsicum annuum HOM05D005212 ORTHO05D006353 9.8e-97 357.8 326 59.2
THA.LOC104816387 Tarenaya hassleriana HOM05D005212 ORTHO05D006353 9.8e-97 357.8 324 58.0
Duzib268G0887 Durio zibethinus HOM05D005212 ORTHO05D006353 1.3e-96 357.5 323 60.1
PGR102G0858 Punica granatum HOM05D005212 ORTHO05D006353 1.3e-96 357.5 328 59.1
TPR.G18569 Trifolium pratense HOM05D005212 ORTHO05D006353 1.7e-96 357.1 354 56.5
Gohir.A13G124600 Gossypium hirsutum HOM05D005212 ORTHO05D006353 1.8e-95 353.6 307 59.9
PGSC0003DMG400029477 Solanum tuberosum HOM05D005212 ORTHO05D006353 2.4e-95 353.2 299 61.2
Medtr3g096970 Medicago truncatula HOM05D005212 ORTHO05D006353 4.1e-95 352.4 324 57.1
Nitab4.5_0009115g0010 Nicotiana tabacum HOM05D005212 ORTHO05D006353 4.1e-95 352.4 328 58.5
MD16G1023100 Malus domestica HOM05D005212 ORTHO05D006353 7.0e-95 351.7 280 65.4
TPR.G5141 Trifolium pratense HOM05D005212 ORTHO05D006353 7.0e-95 351.7 324 59.0
Migut.E00446 Erythranthe guttata HOM05D005212 ORTHO05D006353 9.1e-95 351.3 312 59.6
Thecc.04G190200 Theobroma cacao HOM05D005212 ORTHO05D006353 1.2e-94 350.9 308 61.4
EL10Ac9g21945 Beta vulgaris HOM05D005212 ORTHO05D006353 3.5e-94 349.4 328 57.6
Lalb_Chr07g0187701 Lupinus albus HOM05D005212 ORTHO05D006353 3.5e-94 349.4 327 58.7
Ca_24783_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 7.7e-94 348.2 327 57.5
Psat7g082520 Pisum sativum HOM05D005212 ORTHO05D006353 8.6e-93 344.7 325 58.8
Duzib151G1103 Durio zibethinus HOM05D005212 ORTHO05D006353 1.9e-92 343.6 323 58.5
Haze_10945 Corylus avellana HOM05D005212 ORTHO05D006353 4.2e-92 342.4 326 59.2
Medtr3g088850 Medicago truncatula HOM05D005212 ORTHO05D006353 5.6e-92 342.0 339 54.6
Eucgr.H01942 Eucalyptus grandis HOM05D005212 ORTHO05D006353 7.2e-92 341.7 333 59.2
Thhalv10001552m.g Eutrema salsugineum HOM05D005212 ORTHO05D006353 2.8e-91 339.7 323 56.3
Sed0020748 Sechium edule HOM05D005212 ORTHO05D006353 3.6e-91 339.3 322 56.8
QL03p033836 Quercus lobata HOM05D005212 ORTHO05D006353 4.7e-91 339.0 291 63.2
Sabra16G0312600 Salix brachista HOM05D005212 ORTHO05D006353 1.4e-90 337.4 358 56.1
Sp4g26600 Schrenkiella parvula HOM05D005212 ORTHO05D006353 1.8e-90 337.0 324 56.2
Glyma.08G095400 Glycine max HOM05D005212 ORTHO05D006353 2.3e-90 336.7 319 58.9
Aa31LG1G21440 Aethionema arabicum HOM05D005212 ORTHO05D006353 5.2e-90 335.5 332 53.9
HanXRQChr12g0363921 Helianthus annuus HOM05D005212 ORTHO05D006353 5.2e-90 335.5 331 53.5
Hma1.2p1_0060F.1_g032750 Hydrangea macrophylla HOM05D005212 ORTHO05D006353 1.5e-89 334.0 323 58.2
CANSAT01G1481 Cannabis sativa HOM05D005212 ORTHO05D006353 2.6e-89 333.2 323 55.1
HanXRQChr08g0212231 Helianthus annuus HOM05D005212 ORTHO05D006353 2.9e-88 329.7 328 54.9
Oeu014050.1 Olea europaea HOM05D005212 ORTHO05D006353 3.7e-88 329.3 326 58.3
SGA_v2.0_scaffold39G15210 Striga asiatica HOM05D005212 ORTHO05D006353 3.7e-88 329.3 327 56.6
AL4G43530 Arabidopsis lyrata HOM05D005212 ORTHO05D006353 6.4e-88 328.6 333 54.7
BcaB06g29383 Brassica carinata HOM05D005212 ORTHO05D006353 6.4e-88 328.6 245 64.5
Carub.0004s2707 Capsella rubella HOM05D005212 ORTHO05D006353 6.4e-88 328.6 327 56.3
CARHR139690 Cardamine hirsuta HOM05D005212 ORTHO05D006353 6.4e-88 328.6 330 55.2
BcaC02g07097 Brassica carinata HOM05D005212 ORTHO05D006353 5.4e-87 325.5 330 55.2
BolC4t28609H Brassica oleracea HOM05D000073 ORTHO05D006353 5.4e-87 325.5 328 54.9
AT2G44510 Arabidopsis thaliana HOM05D005212 ORTHO05D006353 3.5e-86 322.8 334 53.3
BraA04t18796Z Brassica rapa HOM05D000073 ORTHO05D000033 3.5e-86 322.8 332 54.2
A04p33360 Brassica napus HOM05D000073 ORTHO05D006698 1.0e-85 321.2 316 54.7
ECA233G1697 Erigeron canadensis HOM05D005212 ORTHO05D006353 1.3e-85 320.9 333 54.4
Phvul.005G028500 Phaseolus vulgaris HOM05D005212 ORTHO05D006353 2.9e-85 319.7 331 56.8
FAN07G0183 Fragaria x ananassa HOM05D005212 ORTHO05D006353 8.6e-85 318.2 304 58.2
C04p71050 Brassica napus HOM05D000073 ORTHO05D006698 1.9e-84 317.0 321 54.5
Ah.11g044490 Amaranthus hybridus HOM05D005212 ORTHO05D006353 3.3e-84 316.2 332 53.3
vmacro10659 Vaccinium macrocarpon HOM05D005212 ORTHO05D006353 3.6e-83 312.8 324 54.9
Lj3C867T4 Lonicera japonica HOM05D005212 ORTHO05D006353 3.1e-82 309.7 307 55.7
CsaV3_5G028340 Cucumis sativus L. HOM05D005212 ORTHO05D006353 8.9e-82 308.1 323 52.9
Lsat_1_v5_gn_4_8681 Lactuca sativa HOM05D005212 ORTHO05D006353 1.2e-81 307.8 237 63.7
DCAR_014725 Daucus carota HOM05D005212 ORTHO05D006353 4.4e-81 305.8 313 55.3
AUR62008760 Chenopodium quinoa HOM05D005212 ORTHO05D006353 2.9e-80 303.1 334 51.8
Manes.15G130900 Manihot esculenta HOM05D005212 ORTHO05D006353 6.4e-80 302.0 284 59.5
PSO478G2757 Papaver somniferum HOM05D005212 ORTHO05D006353 1.9e-79 300.4 341 51.9
Sc10g0005560 Simmondsia chinensis HOM05D005212 ORTHO05D006353 2.4e-79 300.1 295 56.9
PSO339G5759 Papaver somniferum HOM05D005212 ORTHO05D006353 4.1e-79 299.3 341 52.5
Ca_01441_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 7.0e-79 298.5 291 55.3
PSO017G4317 Papaver somniferum HOM05D005212 ORTHO05D006353 7.0e-79 298.5 341 51.6
HPP92_020815 Vanilla planifolia HOM05D005212 ORTHO05D006353 1.6e-78 297.4 317 50.2
ClCG01G006340 Citrullus lanatus HOM05D005212 ORTHO05D006353 2.0e-78 297.0 352 49.7
FAN17G0532 Fragaria x ananassa HOM05D005212 ORTHO05D006353 2.0e-78 297.0 303 59.1
FAN22G0397 Fragaria x ananassa HOM05D005212 ORTHO05D006353 4.6e-78 295.8 304 56.9
FAN12G1848 Fragaria x ananassa HOM05D005212 ORTHO05D006353 3.9e-77 292.7 298 56.4
ATR0829G227 Amborella trichopoda HOM05D005212 ORTHO05D006353 1.1e-76 291.2 313 54.3
Sed0012238 Sechium edule HOM05D005212 ORTHO05D006353 1.5e-76 290.8 236 62.3
Dinv36246 Davidia involucrata HOM05D005212 ORTHO05D006353 1.9e-76 290.4 281 58.4
SalBow2G0696 Salvia bowleyana HOM05D005212 ORTHO05D006353 3.3e-76 289.7 296 55.7
MSTRG.13603 Avicennia marina HOM05D005212 ORTHO05D006353 1.6e-75 287.3 215 69.3
Os03g0853900 Oryza sativa ssp. japonica HOM05D005212 ORTHO05D006353 8.9e-74 281.6 308 48.7
Oeu063592.1 Olea europaea HOM05D005212 ORTHO05D006353 2.9e-72 276.6 272 55.9
Zm00001eb210590 Zea mays HOM05D005212 ORTHO05D006353 8.3e-72 275.0 362 43.4
Dinv28041 Davidia involucrata HOM05D005212 ORTHO05D006353 8.6e-69 265.0 250 60.8
PSO384G3589 Papaver somniferum HOM05D005212 ORTHO05D006353 1.2e-67 261.2 358 46.6
MELO3C005296.2 Cucumis melo HOM05D005212 ORTHO05D006353 4.7e-67 259.2 322 46.9
BcaC01g05169 Brassica carinata HOM05D005212 ORTHO05D006353 2.3e-66 256.9 249 57.0
VMungo1080G0912 Vigna mungo HOM05D005212 ORTHO05D006353 1.5e-65 254.2 211 62.1
AUR62025478 Chenopodium quinoa HOM05D005212 ORTHO05D006353 1.3e-64 251.1 215 60.9
AagrBONN_evm.TU.Sc2ySwM_344.3756 Anthoceros agrestis HOM05D005212 ORTHO05D006353 7.1e-63 245.4 277 47.3
SMO334G0102 Selaginella moellendorffii HOM05D005212 ORTHO05D006353 7.1e-63 245.4 244 50.4
Mapoly0006s0099 Marchantia polymorpha HOM05D005212 ORTHO05D006353 1.6e-62 244.2 253 49.8
Thhalv10014438m.g Eutrema salsugineum HOM05D005212 ORTHO05D006353 3.3e-60 236.5 200 63.0
Hund05206 Selenicereus undatus HOM05D005212 ORTHO05D006353 1.2e-59 234.6 275 50.2
BcaNung07052 Brassica carinata HOM05D005212 ORTHO05D006353 4.7e-59 232.6 245 50.2
Cc04_g08850 Coffea canephora HOM05D005212 ORTHO05D006353 4.7e-59 232.6 171 67.3
Ca_09937_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 2.6e-57 226.9 256 52.7
Ca_09949_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 2.6e-57 226.9 256 52.7
Pp3c25_10280 Physcomitrium patens HOM05D005212 ORTHO05D006353 3.4e-57 226.5 254 46.1
BolC3t15307H Brassica oleracea HOM05D005212 ORTHO05D006353 4.9e-56 222.6 207 58.5
AUR62014219 Chenopodium quinoa HOM05D005212 ORTHO05D006353 2.1e-54 217.2 276 47.5
AUR62014218 Chenopodium quinoa HOM05D005212 ORTHO05D006353 7.8e-54 215.3 244 50.0
CiPaw.06G048200 Carya illinoinensis HOM05D005212 ORTHO05D006353 2.3e-53 213.8 326 46.0
C03p29590 Brassica napus HOM05D005212 ORTHO05D006353 9.9e-49 198.4 212 53.8
BcaB01g03308 Brassica carinata HOM05D005212 ORTHO05D006353 1.0e-45 188.3 221 47.1
CDE04G0882 Ceratophyllum demersum HOM05D005212 ORTHO05D006353 1.0e-45 188.3 150 64.0
AT5G03830 Arabidopsis thaliana HOM05D005212 ORTHO05D006353 4.3e-44 183.0 246 48.0
COL.COLO4_35970 Corchorus olitorius HOM05D005212 ORTHO05D006353 1.4e-42 177.9 176 54.0
Hund24107 Selenicereus undatus HOM05D005212 ORTHO05D006353 4.0e-42 176.4 125 70.4
AL6G13400 Arabidopsis lyrata HOM05D005212 ORTHO05D006353 6.9e-42 175.6 143 61.5
AUR62018080 Chenopodium quinoa HOM05D005212 ORTHO05D006353 1.5e-41 174.5 215 44.7
Cpa.g.sc1084.4 Carica papaya HOM05D005212 ORTHO05D006353 2.0e-41 174.1 122 70.5
unitig_22.g5595 Utricularia gibba HOM05D005212 ORTHO05D006353 7.6e-41 172.2 177 53.1
MCO05G230 Micromonas commoda HOM05D005212 ORTHO05D006353 7.9e-38 162.2 253 36.8
CBR_g30204 Chara braunii HOM05D000019 ORTHO05D000353 2.0e-33 147.5 142 51.4
SEGI_04595 Sequoiadendron giganteum HOM05D005212 ORTHO05D006353 6.5e-32 142.5 158 49.4
Cre03.g200991 Chlamydomonas reinhardtii HOM05D005212 ORTHO05D006353 9.3e-31 138.7 287 32.8
Cc04_g08860 Coffea canephora HOM05D005212 ORTHO05D006353 6.7e-29 132.5 160 48.1
Thhalv10015472m.g Eutrema salsugineum HOM05D005212 ORTHO05D006353 4.8e-27 126.3 157 50.3
AUR62014216 Chenopodium quinoa HOM05D005212 ORTHO05D006353 3.1e-26 123.6 202 41.1
Sabra11G0142300 Salix brachista HOM05D005212 ORTHO05D006353 2.0e-25 120.9 103 64.1
Aqoxy6G02632 Aquilegia oxysepala HOM05D005212 ORTHO05D006353 3.8e-24 116.7 68 85.3
unitig_22.g5596 Utricularia gibba HOM05D005212 ORTHO05D006353 1.3e-21 108.2 89 59.6
Cfa023609 Carpinus fangiana HOM05D005212 ORTHO05D006353 5.3e-18 96.3 169 30.2
Peaxi162Scf00376g00010 Petunia axillaris HOM05D005212 ORTHO05D006353 7.7e-17 92.4 230 32.2
ATR0594G067 Amborella trichopoda HOM05D005212 ORTHO05D006353 2.0e-12 77.8 96 42.7
PRCOL_00004527 Prasinoderma coloniale HOM05D005212 ORTHO05D006353 1.6e-06 58.2 179 29.1
Ca_15863_v3 Cicer arietinum L. HOM05D000681 ORTHO05D011778 2.7e-06 57.4 72 41.7
Peaxi162Scf00376g00009 Petunia axillaris HOM05D005212 ORTHO05D006353 4.7e-06 56.6 30 76.7


User provided reference genes

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