Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy7G01406 Aquilegia oxysepala HOM05D002451 ORTHO05D005601 0.0e+00 2229.1 1143 100.0
TAR636G2911 Trochodendron aralioides HOM05D002451 ORTHO05D005601 0.0e+00 1414.4 1150 64.9
Nn8g39071 Nelumbo nucifera HOM05D002451 ORTHO05D005601 0.0e+00 1371.3 1156 61.3
GSVIVG01016980001 Vitis vinifera HOM05D002451 ORTHO05D005601 0.0e+00 1262.7 1150 58.0
PSO063G3373 Papaver somniferum HOM05D002451 ORTHO05D005601 0.0e+00 1247.3 1154 57.7
PSO832G2466 Papaver somniferum HOM05D002451 ORTHO05D005601 0.0e+00 1238.8 1154 57.3
Dinv37977 Davidia involucrata HOM05D002451 ORTHO05D005601 0.0e+00 1235.3 1155 56.6
QL05p020031 Quercus lobata HOM05D002451 ORTHO05D005601 0.0e+00 1189.1 1229 53.7
Cfa003647 Carpinus fangiana HOM05D002451 ORTHO05D005601 0.0e+00 1154.4 1147 53.7
CiPaw.01G231400 Carya illinoinensis HOM05D002451 ORTHO05D005601 0.0e+00 1153.7 1158 53.5
Potri.003G048800 Populus trichocarpa HOM05D002451 ORTHO05D005601 0.0e+00 1151.3 1148 53.5
Lj9C513G3 Lonicera japonica HOM05D002451 ORTHO05D005601 0.0e+00 1150.2 1144 53.4
MBI04_g20307_MAGBIO Magnolia biondii HOM05D002451 ORTHO05D005601 0.0e+00 1142.5 1228 52.3
Rhsim08G0227600 Rhododendron simsii HOM05D002451 ORTHO05D005601 0.0e+00 1132.9 1217 51.0
Thecc.06G100100 Theobroma cacao HOM05D002451 ORTHO05D005601 0.0e+00 1125.2 1157 53.6
Manes.11G033500 Manihot esculenta HOM05D002451 ORTHO05D005601 0.0e+00 1124.0 1152 52.7
Actinidia32098 Actinidia chinensis HOM05D002451 ORTHO05D005601 0.0e+00 1119.8 1155 53.4
Ciclev10024743m.g Citrus clementina HOM05D002451 ORTHO05D005601 0.0e+00 1119.4 1154 52.9
Haze_15848 Corylus avellana HOM05D002451 ORTHO05D005601 0.0e+00 1112.4 1164 52.3
TWI12G0408 Tripterygium wilfordii HOM05D002451 ORTHO05D005601 0.0e+00 1106.3 1153 51.8
Prupe.3G059000 Prunus persica HOM05D002451 ORTHO05D005601 0.0e+00 1104.7 1164 51.7
Duzib192G0210 Durio zibethinus HOM05D002451 ORTHO05D005601 0.0e+00 1104.4 1155 53.2
Atru.chr1.3524 Acer truncatum HOM05D002451 ORTHO05D005601 0.0e+00 1097.8 1153 52.5
Gorai.010G230600 Gossypium raimondii HOM05D002451 ORTHO05D005601 0.0e+00 1080.5 1156 51.3
Gohir.D06G197800 Gossypium hirsutum HOM05D002451 ORTHO05D005601 0.0e+00 1076.2 1156 51.2
MD09G1202800 Malus domestica HOM05D002451 ORTHO05D005601 0.0e+00 1075.5 1150 50.8
RcHm_v2.0_Chr2g0140541 Rosa chinensis HOM05D002451 ORTHO05D005601 0.0e+00 1075.5 1154 50.9
Solyc03g121030.2 Solanum lycopersicum HOM05D002451 ORTHO05D005601 0.0e+00 1075.1 1143 49.9
Sopen03g039860 Solanum pennellii HOM05D002451 ORTHO05D005601 5.5e-311 1071.2 1143 49.9
Cc04_g02550 Coffea canephora HOM05D002451 ORTHO05D005601 1.5e-308 1063.1 1159 49.8
COL.COLO4_30513 Corchorus olitorius HOM05D002451 ORTHO05D005601 9.4e-308 1060.4 1144 52.4
AUR62031915 Chenopodium quinoa HOM05D002451 ORTHO05D005601 8.8e-306 1053.9 1147 49.3
FAN05G4332 Fragaria x ananassa HOM05D002451 ORTHO05D005601 8.8e-306 1053.9 1154 50.8
CANSAT56G2471 Cannabis sativa HOM05D002451 ORTHO05D005601 4.4e-305 1051.6 1144 50.1
CsaV3_7G035270 Cucumis sativus L. HOM05D002451 ORTHO05D005601 3.7e-304 1048.5 1155 49.2
Sed0021872 Sechium edule HOM05D002451 ORTHO05D005601 8.3e-304 1047.3 1158 49.2
Sc10g0007590 Simmondsia chinensis HOM05D002451 ORTHO05D005601 1.6e-299 1033.1 1156 49.3
Phvul.005G166100 Phaseolus vulgaris HOM05D002451 ORTHO05D005601 1.0e-298 1030.4 1160 49.4
AUR62022206 Chenopodium quinoa HOM05D002451 ORTHO05D005601 3.0e-298 1028.9 1119 49.3
TPR.G6596 Trifolium pratense HOM05D002451 ORTHO05D005601 8.9e-298 1027.3 1153 49.2
Lalb_Chr14g0373021 Lupinus albus HOM05D002451 ORTHO05D005601 5.7e-297 1024.6 1148 50.0
Glyma.13G354600 Glycine max HOM05D002451 ORTHO05D005601 4.1e-295 1018.5 1153 48.7
FAN02G1073 Fragaria x ananassa HOM05D002451 ORTHO05D005601 9.2e-295 1017.3 1143 49.8
Ca_01165_v3 Cicer arietinum L. HOM05D002451 ORTHO05D005601 5.9e-294 1014.6 1153 49.5
Migut.I00897 Erythranthe guttata HOM05D002451 ORTHO05D005601 1.0e-293 1013.8 1152 49.0
ATR0705G185 Amborella trichopoda HOM05D002451 ORTHO05D005601 1.9e-292 1009.6 1170 47.6
MSTRG.11027 Avicennia marina HOM05D002451 ORTHO05D005601 1.2e-291 1006.9 1155 49.4
MELO3C024437.2 Cucumis melo HOM05D002451 ORTHO05D005601 1.0e-290 1003.8 1112 49.1
Medtr2g100870 Medicago truncatula HOM05D002451 ORTHO05D005601 3.1e-290 1002.3 1154 49.2
PGR102G3176 Punica granatum HOM05D002451 ORTHO05D005601 1.2e-289 1000.3 1148 47.7
vmacro18852 Vaccinium macrocarpon HOM05D002451 ORTHO05D005601 1.3e-288 996.9 1014 52.1
Glyma.15G019600 Glycine max HOM05D002451 ORTHO05D005601 3.2e-287 992.3 1151 48.2
Lj1g0009957 Lotus japonicus HOM05D002451 ORTHO05D005601 3.2e-287 992.3 1154 48.4
Gohir.A06G189400 Gossypium hirsutum HOM05D002451 ORTHO05D005601 2.1e-283 979.5 1100 49.2
Medtr5g085950 Medicago truncatula HOM05D002451 ORTHO05D005601 1.7e-280 969.9 1154 47.7
Eucgr.F03079 Eucalyptus grandis HOM05D002451 ORTHO05D005601 2.9e-280 969.1 1103 48.8
FvH4_6g32400 Fragaria vesca HOM05D002451 ORTHO05D005601 4.9e-280 968.4 1069 50.2
TWI75G1452 Tripterygium wilfordii HOM05D002451 ORTHO05D005601 1.2e-278 963.8 1155 47.5
arahy.Tifrunner.gnm1.ann1.65X03I Arachis hypogaea HOM05D002451 ORTHO05D005601 4.6e-278 961.8 1142 46.9
arahy.Tifrunner.gnm1.ann1.T566S8 Arachis hypogaea HOM05D002451 ORTHO05D005601 2.3e-277 959.5 1142 47.1
ECA232G2699 Erigeron canadensis HOM05D002451 ORTHO05D005601 6.6e-277 958.0 1146 46.9
THA.LOC104809828 Tarenaya hassleriana HOM05D002451 ORTHO05D005601 5.2e-274 948.3 1159 46.7
Lsat_1_v5_gn_4_97440 Lactuca sativa HOM05D002451 ORTHO05D005601 6.4e-272 941.4 1137 45.6
Hund07601 Selenicereus undatus HOM05D002451 ORTHO05D005601 1.3e-269 933.7 1147 44.9
CAN.G1143.14 Capsicum annuum HOM05D002451 ORTHO05D005601 3.4e-265 919.1 1031 48.5
HanXRQChr09g0276251 Helianthus annuus HOM05D002451 ORTHO05D005601 9.9e-265 917.5 1145 45.2
Thhalv10003552m.g Eutrema salsugineum HOM05D002451 ORTHO05D005601 7.8e-262 907.9 1141 44.8
Sp2g18530 Schrenkiella parvula HOM05D002451 ORTHO05D005601 2.3e-261 906.4 1149 43.2
AL8G20730 Arabidopsis lyrata HOM05D002451 ORTHO05D005601 1.9e-260 903.3 1147 43.3
HPP92_007690 Vanilla planifolia HOM05D002451 ORTHO05D005601 4.3e-260 902.1 1158 45.0
Carub.0008s0769 Capsella rubella HOM05D002451 ORTHO05D005601 1.5e-257 893.6 1140 43.2
AT5G48120 Arabidopsis thaliana HOM05D002451 ORTHO05D005601 4.9e-256 888.6 1148 43.2
BcaC03g17628 Brassica carinata HOM05D002451 ORTHO05D005601 1.4e-255 887.1 1149 43.0
BraA02t08709Z Brassica rapa HOM05D002451 ORTHO05D005601 1.9e-255 886.7 1155 42.3
BolC2t11683H Brassica oleracea HOM05D002451 ORTHO05D005601 3.5e-254 882.5 1150 43.0
Sabra03G0029300 Salix brachista HOM05D002451 ORTHO05D005601 4.6e-254 882.1 1097 46.5
Nitab4.5_0006902g0020 Nicotiana tabacum HOM05D002451 ORTHO05D005601 3.0e-253 879.4 1135 44.9
Psat5g295800 Pisum sativum HOM05D002451 ORTHO05D005601 6.6e-253 878.2 1099 46.0
BcaB07g30001 Brassica carinata HOM05D002451 ORTHO05D005601 1.9e-252 876.7 1141 42.0
C02p56250 Brassica napus HOM05D002451 ORTHO05D005601 1.9e-252 876.7 1150 42.7
Aa31LG11G5160 Aethionema arabicum HOM05D002451 ORTHO05D005601 9.6e-252 874.4 1141 42.2
FAN09G4229 Fragaria x ananassa HOM05D002451 ORTHO05D005601 1.4e-250 870.5 1046 48.1
EL10Ac9g21204 Beta vulgaris HOM05D002451 ORTHO05D005601 6.9e-250 868.2 1071 45.5
A02p37220 Brassica napus HOM05D002451 ORTHO05D005601 9.9e-249 864.4 1150 41.9
Oeu017119.1 Olea europaea HOM05D002451 ORTHO05D005601 2.4e-247 859.8 1075 45.4
Ah.01g022090 Amaranthus hybridus HOM05D002451 ORTHO05D005601 7.1e-247 858.2 1141 43.4
CARHR259290 Cardamine hirsuta HOM05D002451 ORTHO05D005601 2.3e-245 853.2 1154 42.3
Zm00001eb301230 Zea mays HOM05D002451 ORTHO05D005601 1.3e-243 847.4 1160 43.1
SGA_v2.0_scaffold66G22528 Striga asiatica HOM05D002451 ORTHO05D005601 4.8e-243 845.5 1157 42.2
Nitab4.5_0006467g0020 Nicotiana tabacum HOM05D002451 ORTHO05D005601 1.7e-232 810.4 1135 42.8
FAN14G4820 Fragaria x ananassa HOM05D002451 ORTHO05D005601 4.2e-231 805.8 956 48.0
DCAR_023080 Daucus carota HOM05D002451 ORTHO05D005601 3.2e-223 779.6 1144 40.7
Peaxi162Scf00038g01032 Petunia axillaris HOM05D002451 ORTHO05D005601 1.1e-218 764.6 901 46.1
ClCG09G000210 Citrullus lanatus HOM05D002451 ORTHO05D005601 2.0e-217 760.4 954 45.8
SEGI_26537 Sequoiadendron giganteum HOM05D002451 ORTHO05D005601 3.7e-179 633.3 1049 38.6
Pp3c9_4950 Physcomitrium patens HOM05D002451 ORTHO05D005601 1.3e-155 555.1 1198 33.6
Mapoly0036s0119 Marchantia polymorpha HOM05D002451 ORTHO05D005601 2.4e-146 524.2 1201 31.7
Os07g0177100 Oryza sativa ssp. japonica HOM05D002451 ORTHO05D005601 1.8e-133 481.5 650 42.6
TAR624G0206 Trochodendron aralioides HOM05D002451 ORTHO05D005601 1.3e-131 475.3 440 57.5
unitig_88.g27601 Utricularia gibba HOM05D002451 ORTHO05D005601 4.0e-125 453.8 698 39.5
CSS0036196 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 1.0e-120 439.1 445 53.0
SMO111G0185 Selaginella moellendorffii HOM05D002451 ORTHO05D005601 8.5e-115 419.5 1139 29.3
Aa31sc1931G10 Aethionema arabicum HOM05D002451 ORTHO05D005601 3.3e-111 407.5 524 42.0
CSS0044368 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 7.4e-103 379.8 330 58.2
CDE05G1834 Ceratophyllum demersum HOM05D002451 ORTHO05D005601 1.5e-100 372.1 431 49.0
Cpa.g.sc25.8 Carica papaya HOM05D002451 ORTHO05D005601 7.2e-98 363.2 509 40.5
Aa31LG11G5130 Aethionema arabicum HOM05D002451 ORTHO05D005601 7.5e-87 326.6 446 41.9
ClCG09G000220 Citrullus lanatus HOM05D002451 ORTHO05D005601 7.2e-82 310.1 235 64.3
CDE05G2530 Ceratophyllum demersum HOM05D002451 ORTHO05D005601 1.5e-71 275.8 232 60.3
TAR624G0246 Trochodendron aralioides HOM05D002451 ORTHO05D005601 7.5e-71 273.5 205 68.8
CBR_g26190 Chara braunii HOM05D002451 ORTHO05D005601 5.9e-68 263.8 1292 24.4
Cpa.g.sc25.5 Carica papaya HOM05D002451 ORTHO05D005601 3.6e-57 228.0 278 48.2
TAR624G0921 Trochodendron aralioides HOM05D002451 ORTHO05D005601 4.7e-57 227.6 226 54.4
Cpa.g.sc25.4 Carica papaya HOM05D002451 ORTHO05D005601 8.9e-56 223.4 155 67.7
QL05p020001 Quercus lobata HOM05D002451 ORTHO05D005601 1.7e-54 219.2 310 45.2
Sc17g0002930 Simmondsia chinensis HOM05D002451 ORTHO05D005601 9.2e-53 213.4 178 61.2
Aa31LG9G10330 Aethionema arabicum HOM05D002451 ORTHO05D005601 2.0e-47 195.7 339 35.4
HPP92_007773 Vanilla planifolia HOM05D002451 ORTHO05D005601 4.3e-42 177.9 159 57.2
Sabra03G0029200 Salix brachista HOM05D002451 ORTHO05D005601 1.3e-38 166.4 184 50.0
TAR624G0431 Trochodendron aralioides HOM05D002451 ORTHO05D005601 1.7e-35 156.0 119 67.2
Psat3g036640 Pisum sativum HOM05D002451 ORTHO05D005601 6.4e-30 137.5 187 44.4
unitig_88.g27602 Utricularia gibba HOM05D002451 ORTHO05D005601 8.4e-30 137.1 131 55.7
EL10Ac9g21205 Beta vulgaris HOM05D002451 ORTHO05D005601 7.8e-28 130.6 179 44.7
MCO12G207 Micromonas commoda HOM05D002451 ORTHO05D005601 8.7e-27 127.1 356 28.7
SEGI_23779 Sequoiadendron giganteum HOM05D002451 ORTHO05D005601 2.5e-26 125.6 120 54.2
Zm00001eb320400 Zea mays HOM05D002451 ORTHO05D005601 4.3e-26 124.8 279 34.8
Psat4g171400 Pisum sativum HOM05D002451 ORTHO05D005601 9.6e-26 123.6 137 51.8
HPP92_007804 Vanilla planifolia HOM05D002451 ORTHO05D005601 1.3e-25 123.2 163 44.8
A06p15140 Brassica napus HOM05D002451 ORTHO05D020166 6.9e-24 117.5 196 41.3
BraA06t24629Z Brassica rapa HOM05D002451 ORTHO05D020166 6.9e-24 117.5 196 41.3
Aa31LG9G10320 Aethionema arabicum HOM05D002451 ORTHO05D005601 7.6e-23 114.0 122 50.0
CSS0026050 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 1.1e-21 110.2 107 57.9
CSS0028178 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 1.1e-21 110.2 107 57.9
Cpa.g.sc25.3 Carica papaya HOM05D002451 ORTHO05D005601 5.4e-21 107.8 96 60.4
CSS0023144 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 1.0e-19 103.6 122 47.5
SHI11092 Sapria himalayana HOM05D002451 ORTHO05D005601 6.2e-17 94.4 154 39.6
Zm00001eb029900 Zea mays HOM05D002451 ORTHO05D005601 1.8e-16 92.8 90 51.1
SHI11090 Sapria himalayana HOM05D002451 ORTHO05D005601 2.6e-15 89.0 63 57.1
Cre13.g605050 Chlamydomonas reinhardtii HOM05D002451 ORTHO05D005601 3.4e-15 88.6 151 35.1
Peaxi162Scf00038g01031 Petunia axillaris HOM05D002451 ORTHO05D005601 3.4e-15 88.6 55 78.2
SHI11089 Sapria himalayana HOM05D002451 ORTHO05D005601 5.8e-15 87.8 73 52.1
Lj1g0017121 Lotus japonicus HOM05D002451 ORTHO05D005601 1.3e-14 86.7 93 48.4
vmacro17797 Vaccinium macrocarpon HOM05D000003 ORTHO05D000007 2.3e-11 75.9 74 55.4
TPR.G18835 Trifolium pratense HOM05D002451 ORTHO05D005601 1.5e-10 73.2 62 59.7
SGA_v2.0_scaffold123G33404 Striga asiatica HOM05D002451 ORTHO05D005601 4.3e-10 71.6 92 38.0
Medtr5g055460 Medicago truncatula HOM05D002451 ORTHO05D005601 4.8e-09 68.2 48 62.5
Hund28869 Selenicereus undatus HOM05D002451 ORTHO05D005601 3.1e-08 65.5 57 59.6
TPR.G18837 Trifolium pratense HOM05D002451 ORTHO05D005601 3.1e-08 65.5 73 47.9
Hund28828 Selenicereus undatus HOM05D002451 ORTHO05D005601 4.0e-08 65.1 61 57.4
Zm00001eb105150 Zea mays HOM05D002451 ORTHO05D005601 2.2e-06 59.3 46 60.9


User provided reference genes

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