Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy7G01262 Aquilegia oxysepala HOM05D004932 ORTHO05D005622 5.1e-168 594.3 303 100.0
CANSAT56G0365 Cannabis sativa HOM05D004932 ORTHO05D005622 7.5e-111 404.4 300 66.3
Nn6g35421 Nelumbo nucifera HOM05D004932 ORTHO05D005622 3.7e-110 402.1 307 65.8
Hma1.2p1_0798F.1_g219580 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 2.4e-109 399.4 304 63.8
Dinv36742 Davidia involucrata HOM05D004932 ORTHO05D005622 1.6e-108 396.7 305 63.9
Dinv42295 Davidia involucrata HOM05D004932 ORTHO05D005622 5.9e-108 394.8 305 61.3
Actinidia29889 Actinidia chinensis HOM05D004932 ORTHO05D005622 1.0e-107 394.0 306 62.4
Ca_25616_v3 Cicer arietinum L. HOM05D004932 ORTHO05D005622 4.2e-106 388.7 292 65.1
Lj2g0005770 Lotus japonicus HOM05D004932 ORTHO05D005622 6.1e-105 384.8 298 64.1
Medtr6g091780 Medicago truncatula HOM05D004932 ORTHO05D005622 8.0e-105 384.4 295 64.4
Nitab4.5_0007297g0010 Nicotiana tabacum HOM05D004932 ORTHO05D005622 4.0e-104 382.1 295 63.1
PGSC0003DMG400008434 Solanum tuberosum HOM05D004932 ORTHO05D005622 8.8e-104 380.9 305 62.3
QL02p063162 Quercus lobata HOM05D004932 ORTHO05D005622 3.4e-103 379.0 304 63.5
MSTRG.10579 Avicennia marina HOM05D004932 ORTHO05D005622 4.4e-103 378.6 305 59.3
Lj7C672T15 Lonicera japonica HOM05D004932 ORTHO05D005622 5.7e-103 378.3 296 62.5
Lalb_Chr24g0393881 Lupinus albus HOM05D004932 ORTHO05D005622 7.5e-103 377.9 287 64.5
Duzib150G0148 Durio zibethinus HOM05D004932 ORTHO05D005622 9.8e-103 377.5 306 61.8
FAN26G1352 Fragaria x ananassa HOM05D004932 ORTHO05D005622 1.7e-102 376.7 306 62.7
FAN26G3436 Fragaria x ananassa HOM05D004932 ORTHO05D005622 1.7e-102 376.7 306 62.7
Nitab4.5_0000713g0230 Nicotiana tabacum HOM05D004932 ORTHO05D005622 1.7e-102 376.7 295 62.7
Duzib168G1170 Durio zibethinus HOM05D004932 ORTHO05D005622 2.2e-102 376.3 306 60.5
PSO210G2479 Papaver somniferum HOM05D004932 ORTHO05D005622 4.8e-102 375.2 291 65.3
FvH4_1g07000 Fragaria vesca HOM05D004932 ORTHO05D005622 8.3e-102 374.4 306 60.8
PGR142G3354 Punica granatum HOM05D004932 ORTHO05D005622 8.3e-102 374.4 308 60.1
CAN.G1837.4 Capsicum annuum HOM05D004932 ORTHO05D005622 1.8e-101 373.2 305 61.3
FAN19G2121 Fragaria x ananassa HOM05D004932 ORTHO05D005622 1.8e-101 373.2 306 62.1
FAN23G2709 Fragaria x ananassa HOM05D004932 ORTHO05D005622 5.4e-101 371.7 306 61.8
GSVIVG01015235001 Vitis vinifera HOM05D004932 ORTHO05D005622 9.1e-101 370.9 302 61.6
Gohir.D07G010400 Gossypium hirsutum HOM05D004932 ORTHO05D005622 1.2e-100 370.5 306 61.1
Gorai.001G010800 Gossypium raimondii HOM05D004932 ORTHO05D005622 1.2e-100 370.5 306 61.1
FAN28G1050 Fragaria x ananassa HOM05D004932 ORTHO05D005622 1.6e-100 370.2 298 62.8
Gohir.A07G010100 Gossypium hirsutum HOM05D004932 ORTHO05D005622 3.5e-100 369.0 306 60.1
arahy.Tifrunner.gnm1.ann1.NAI4LE Arachis hypogaea HOM05D004932 ORTHO05D005622 5.9e-100 368.2 301 62.5
MD15G1203900 Malus domestica HOM05D004932 ORTHO05D005622 2.3e-99 366.3 307 61.6
Glyma.07G128200 Glycine max HOM05D004932 ORTHO05D005622 3.8e-99 365.5 290 62.4
SalBow1G2721 Salvia bowleyana HOM05D004932 ORTHO05D005622 8.6e-99 364.4 296 58.4
arahy.Tifrunner.gnm1.ann1.RRYY0T Arachis hypogaea HOM05D004932 ORTHO05D005622 1.9e-98 363.2 301 62.1
CiPaw.03G218800 Carya illinoinensis HOM05D004932 ORTHO05D005622 1.9e-98 363.2 294 63.6
TWI63G1476 Tripterygium wilfordii HOM05D004932 ORTHO05D005622 4.2e-98 362.1 297 62.6
Lalb_Chr14g0375311 Lupinus albus HOM05D004932 ORTHO05D005622 1.6e-97 360.1 286 61.2
PSO210G4737 Papaver somniferum HOM05D004932 ORTHO05D005622 1.6e-97 360.1 294 62.9
Eucgr.C00917 Eucalyptus grandis HOM05D004932 ORTHO05D005622 2.8e-97 359.4 291 59.1
Sopen07g015910 Solanum pennellii HOM05D004932 ORTHO05D005622 3.6e-97 359.0 296 61.5
Medtr6g090810 Medicago truncatula HOM05D004932 ORTHO05D005622 1.4e-96 357.1 295 62.4
ATR0789G094 Amborella trichopoda HOM05D004932 ORTHO05D005622 4.0e-96 355.5 300 57.3
Solyc07g032250.4 Solanum lycopersicum HOM05D004932 ORTHO05D005622 4.0e-96 355.5 305 60.3
EL10Ac8g19275 Beta vulgaris HOM05D004932 ORTHO05D005622 5.2e-96 355.1 297 61.3
Phvul.004G172100 Phaseolus vulgaris HOM05D004932 ORTHO05D005622 5.7e-95 351.7 293 61.4
MELO3C015448.2 Cucumis melo HOM05D004932 ORTHO05D005622 9.8e-95 350.9 299 60.2
VMungo0464G1844 Vigna mungo HOM05D004932 ORTHO05D005622 1.3e-94 350.5 294 61.2
Thecc.09G093000 Theobroma cacao HOM05D004932 ORTHO05D005622 2.2e-94 349.7 298 59.4
Atru.chr7.1544 Acer truncatum HOM05D004932 ORTHO05D005622 6.3e-94 348.2 308 59.1
CSS0009775 Camellia sinensis var. sinensis HOM05D004932 ORTHO05D005622 8.3e-94 347.8 306 57.8
Cc06_g11080 Coffea canephora HOM05D004932 ORTHO05D005622 1.8e-93 346.7 306 58.8
CsaV3_1G040210 Cucumis sativus L. HOM05D004932 ORTHO05D005622 1.8e-93 346.7 300 60.3
CsaV3_UNG060480 Cucumis sativus L. HOM05D004932 ORTHO05D005622 1.8e-93 346.7 300 60.3
Manes.14G155500 Manihot esculenta HOM05D004932 ORTHO05D005622 2.4e-93 346.3 308 55.2
Prupe.7G213500 Prunus persica HOM05D004932 ORTHO05D005622 3.1e-93 345.9 300 59.0
Haze_25884 Corylus avellana HOM05D004932 ORTHO05D005622 9.2e-93 344.4 299 60.5
A01p08520 Brassica napus HOM05D004932 ORTHO05D005622 3.5e-92 342.4 312 56.4
Manes.16G104000 Manihot esculenta HOM05D004932 ORTHO05D005622 4.5e-92 342.0 308 51.6
Potri.018G067300 Populus trichocarpa HOM05D004932 ORTHO05D005622 4.5e-92 342.0 306 54.6
Glyma.01G003700 Glycine max HOM05D004932 ORTHO05D005622 7.8e-92 341.3 291 58.8
MD02G1074400 Malus domestica HOM05D004932 ORTHO05D005622 1.0e-91 340.9 306 59.2
TPR.G35493 Trifolium pratense HOM05D004932 ORTHO05D005622 1.0e-91 340.9 300 60.3
AL7G22880 Arabidopsis lyrata HOM05D004932 ORTHO05D005622 2.3e-91 339.7 305 57.4
Medtr6g092180 Medicago truncatula HOM05D004932 ORTHO05D005622 2.9e-91 339.3 295 60.3
AT4G29520 Arabidopsis thaliana HOM05D004932 ORTHO05D005622 3.8e-91 339.0 305 57.4
CDE05G0556 Ceratophyllum demersum HOM05D004932 ORTHO05D005622 3.8e-91 339.0 308 58.4
vmacro06275 Vaccinium macrocarpon HOM05D004932 ORTHO05D005622 5.0e-91 338.6 306 56.5
Sabra18G0059800 Salix brachista HOM05D004932 ORTHO05D005622 8.6e-91 337.8 306 55.9
Carub.0007s1103 Capsella rubella HOM05D004932 ORTHO05D005622 5.6e-90 335.1 306 56.2
COL.COLO4_18228 Corchorus olitorius HOM05D004932 ORTHO05D005622 5.6e-90 335.1 298 58.7
THA.LOC104814605 Tarenaya hassleriana HOM05D004932 ORTHO05D005622 2.1e-89 333.2 304 55.6
BraA01t00801Z Brassica rapa HOM05D004932 ORTHO05D005622 2.8e-89 332.8 320 54.7
RcHm_v2.0_Chr2g0092951 Rosa chinensis HOM05D004932 ORTHO05D005622 4.7e-89 332.0 298 57.7
C01p09950 Brassica napus HOM05D004932 ORTHO05D005622 6.1e-89 331.6 312 55.8
BolC1t00957H Brassica oleracea HOM05D004932 ORTHO05D005622 6.1e-89 331.6 312 55.8
ClCG03G015800 Citrullus lanatus HOM05D004932 ORTHO05D005622 6.1e-89 331.6 298 57.0
Psat1g049760 Pisum sativum HOM05D004932 ORTHO05D005622 4.0e-88 328.9 293 57.3
BcaC09g51740 Brassica carinata HOM05D004932 ORTHO05D005622 5.2e-88 328.6 306 56.9
ECA234G2984 Erigeron canadensis HOM05D004932 ORTHO05D005622 8.9e-88 327.8 268 59.0
Thhalv10025804m.g Eutrema salsugineum HOM05D004932 ORTHO05D005622 3.4e-87 325.9 310 53.2
BcaC01g01175 Brassica carinata HOM05D004932 ORTHO05D005622 2.9e-86 322.8 306 55.9
Cpa.g.sc7.248 Carica papaya HOM05D004932 ORTHO05D005622 8.3e-86 321.2 300 56.7
Rhsim03G0234400 Rhododendron simsii HOM05D004932 ORTHO05D005622 1.8e-85 320.1 306 56.2
Peaxi162Scf00444g00617 Petunia axillaris HOM05D004932 ORTHO05D005622 4.1e-85 318.9 303 53.5
arahy.Tifrunner.gnm1.ann1.E8KE86 Arachis hypogaea HOM05D004932 ORTHO05D005622 5.4e-85 318.5 304 56.9
BraA08t33920Z Brassica rapa HOM05D004932 ORTHO05D005622 9.2e-85 317.8 313 55.3
A08p19620 Brassica napus HOM05D004932 ORTHO05D005622 1.2e-84 317.4 306 55.6
BolC3t21234H Brassica oleracea HOM05D004932 ORTHO05D005622 1.6e-84 317.0 313 55.3
Sp7g27380 Schrenkiella parvula HOM05D004932 ORTHO05D005622 2.0e-84 316.6 314 54.5
CARHR237350 Cardamine hirsuta HOM05D004932 ORTHO05D005622 5.9e-84 315.1 309 54.7
arahy.Tifrunner.gnm1.ann1.XF40UC Arachis hypogaea HOM05D004932 ORTHO05D005622 7.8e-84 314.7 296 57.1
C03p89240 Brassica napus HOM05D004932 ORTHO05D005622 7.8e-84 314.7 313 55.0
Os06g0150400 Oryza sativa ssp. japonica HOM05D004932 ORTHO05D005622 3.0e-83 312.8 279 57.0
Ciclev10009015m.g Citrus clementina HOM05D004932 ORTHO05D005622 3.9e-83 312.4 303 53.8
Sed0008469 Sechium edule HOM05D004932 ORTHO05D005622 3.9e-83 312.4 235 66.0
Sc18g0001850 Simmondsia chinensis HOM05D004932 ORTHO05D005622 3.9e-83 312.4 255 60.4
HPP92_004560 Vanilla planifolia HOM05D004932 ORTHO05D005622 6.6e-83 311.6 304 53.0
BcaB03g12610 Brassica carinata HOM05D004932 ORTHO05D005622 1.5e-82 310.5 311 53.7
Zm00001eb376850 Zea mays HOM05D004932 ORTHO05D005622 4.3e-82 308.9 281 55.2
Oeu000325.1 Olea europaea HOM05D001440 ORTHO05D005622 1.2e-81 307.4 251 61.0
unitig_749.g14227 Utricularia gibba HOM05D004932 ORTHO05D005622 1.2e-81 307.4 283 55.8
Lsat_1_v5_gn_5_145840 Lactuca sativa HOM05D004932 ORTHO05D005622 3.6e-81 305.8 312 53.2
SEGI_24488 Sequoiadendron giganteum HOM05D004932 ORTHO05D005622 8.0e-81 304.7 288 52.1
DCAR_011989 Daucus carota HOM05D004932 ORTHO05D005622 1.1e-80 304.3 269 58.0
CDE05G1139 Ceratophyllum demersum HOM05D004932 ORTHO05D005622 5.2e-80 302.0 263 58.9
HanXRQChr10g0319131 Helianthus annuus HOM05D004932 ORTHO05D005622 1.5e-79 300.4 297 53.2
Migut.K00580 Erythranthe guttata HOM05D004932 ORTHO05D005622 5.8e-79 298.5 288 54.2
AUR62027447 Chenopodium quinoa HOM05D004932 ORTHO05D005622 1.3e-78 297.4 290 52.1
AUR62031253 Chenopodium quinoa HOM05D004932 ORTHO05D005622 1.7e-78 297.0 290 50.7
Aa31LG2G20960 Aethionema arabicum HOM05D004932 ORTHO05D005622 1.2e-76 290.8 307 50.2
SGA_v2.0_scaffold10G05207 Striga asiatica HOM05D004932 ORTHO05D005622 7.8e-76 288.1 341 45.7
Ah.09g228480 Amaranthus hybridus HOM05D004932 ORTHO05D005622 1.7e-75 287.0 298 49.3
Medtr6g092150 Medicago truncatula HOM05D004932 ORTHO05D005622 4.0e-72 275.8 307 50.8
TAR365G0154 Trochodendron aralioides HOM05D004932 ORTHO05D005622 6.8e-72 275.0 232 58.2
unitig_78.g29619 Utricularia gibba HOM05D004932 ORTHO05D005622 7.8e-68 261.5 269 52.8
Cfa003116 Carpinus fangiana HOM05D004932 ORTHO05D005622 8.1e-65 251.5 229 58.1
Mapoly0075s0048 Marchantia polymorpha HOM05D004932 ORTHO05D005622 1.9e-61 240.4 322 43.5
HanXRQChr12g0355371 Helianthus annuus HOM05D004932 ORTHO05D005622 1.7e-59 233.8 310 46.1
Pp3c4_19450 Physcomitrium patens HOM05D004932 ORTHO05D005622 3.0e-59 233.0 308 44.8
SHI02816 Sapria himalayana HOM05D004932 ORTHO05D005622 1.4e-53 214.2 225 51.6
AagrBONN_evm.TU.Sc2ySwM_362.2022 Anthoceros agrestis HOM05D004932 ORTHO05D005622 2.4e-53 213.4 212 50.0
arahy.Tifrunner.gnm1.ann1.GR1INA Arachis hypogaea HOM05D004932 ORTHO05D005622 5.6e-50 202.2 187 55.1
SMO361G0136 Selaginella moellendorffii HOM05D004932 ORTHO05D005622 2.8e-49 199.9 300 40.7
Cc06_g18040 Coffea canephora HOM05D004932 ORTHO05D005622 2.3e-43 180.3 201 47.8
CBR_g8029 Chara braunii HOM05D004932 ORTHO05D005622 9.0e-40 168.3 245 38.4
Oeu037599.1 Olea europaea HOM05D004932 ORTHO05D005622 2.2e-38 163.7 287 37.6
Hma1.2p1_0798F.1_g219570 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 9.0e-32 141.7 129 57.4
Hma1.2p1_1074F.1_g254276 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 9.0e-32 141.7 129 57.4
arahy.Tifrunner.gnm1.ann1.Y4MEFZ Arachis hypogaea HOM05D004932 ORTHO05D005622 2.6e-31 140.2 102 62.7
unitig_26.g9168 Utricularia gibba HOM05D004932 ORTHO05D005622 7.6e-31 138.7 135 51.1
Cre03.g151700 Chlamydomonas reinhardtii HOM05D004932 ORTHO05D005622 3.4e-23 113.2 183 36.1
Hma1.2p1_1586F.1_g292210 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 5.9e-23 112.5 68 70.6
MCO04G519 Micromonas commoda HOM05D004932 ORTHO05D005622 3.8e-22 109.8 168 34.5
PRCOL_00005979 Prasinoderma coloniale HOM05D004932 ORTHO05D005622 1.9e-21 107.5 227 27.8
arahy.Tifrunner.gnm1.ann1.XYZ5FS Arachis hypogaea HOM05D004932 ORTHO05D005622 2.1e-20 104.0 78 56.4
RcHm_v2.0_Chr5g0016971 Rosa chinensis HOM05D004932 ORTHO05D005622 9.7e-18 95.1 64 67.2
RcHm_v2.0_Chr4g0402141 Rosa chinensis HOM05D004932 ORTHO05D005622 1.1e-16 91.7 62 66.1
Oeu037598.1 Olea europaea HOM05D004932 ORTHO05D005622 4.1e-16 89.7 94 56.4
unitig_26.g9167 Utricularia gibba HOM05D004932 ORTHO05D005622 2.0e-15 87.4 111 51.4
Nn2g13205 Nelumbo nucifera HOM05D004932 ORTHO05D005622 1.4e-13 81.3 47 70.2
Hma1.2p1_1881F.1_g306380 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 5.5e-13 79.3 65 52.3
Nn3g21874 Nelumbo nucifera HOM05D004932 ORTHO05D005622 5.5e-13 79.3 46 71.7
CiPaw.05G072200 Carya illinoinensis HOM05D004932 ORTHO05D005622 1.2e-12 78.2 50 68.0
Medtr6g091840 Medicago truncatula HOM05D004932 ORTHO05D005622 7.9e-12 75.5 121 43.0
CARHR109770 Cardamine hirsuta HOM05D004932 ORTHO05D005622 1.3e-09 68.2 119 38.7
Medtr6g077350 Medicago truncatula HOM05D004932 ORTHO05D005622 3.1e-08 63.5 43 67.4
TAR636G2165 Trochodendron aralioides HOM05D004932 ORTHO05D005622 5.3e-08 62.8 56 53.6
arahy.Tifrunner.gnm1.ann1.P1T2M1 Arachis hypogaea HOM05D000368 ORTHO05D000289 1.2e-07 61.6 39 66.7


User provided reference genes

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