Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy7G01007 Aquilegia oxysepala HOM05D004368 ORTHO05D004990 1.3e-183 646.4 339 100.0
TAR468G0014 Trochodendron aralioides HOM05D004368 ORTHO05D004990 2.1e-98 363.2 369 57.5
TAR626G1097 Trochodendron aralioides HOM05D004368 ORTHO05D004990 1.2e-96 357.5 341 61.0
Manes.11G016500 Manihot esculenta HOM05D004368 ORTHO05D004990 8.4e-95 351.3 227 81.5
Duzib160G0466 Durio zibethinus HOM05D004368 ORTHO05D004990 1.4e-94 350.5 339 59.0
Duzib235G0527 Durio zibethinus HOM05D004368 ORTHO05D004990 1.4e-94 350.5 245 73.9
CSS0030612 Camellia sinensis var. sinensis HOM05D004368 ORTHO05D004990 1.9e-94 350.1 233 78.5
CsaV3_3G030850 Cucumis sativus L. HOM05D000945 ORTHO05D000919 1.3e-92 344.0 234 75.6
Actinidia21803 Actinidia chinensis HOM05D004368 ORTHO05D004990 2.3e-92 343.2 234 77.8
Actinidia32205 Actinidia chinensis HOM05D004368 ORTHO05D004990 3.9e-92 342.4 234 76.1
Nn8g38578 Nelumbo nucifera HOM05D004368 ORTHO05D004990 3.9e-92 342.4 247 72.1
Rhsim08G0241200 Rhododendron simsii HOM05D004368 ORTHO05D004990 3.9e-92 342.4 234 76.5
Ciclev10026090m.g Citrus clementina HOM05D004368 ORTHO05D004990 8.7e-92 341.3 348 58.9
COL.COLO4_30792 Corchorus olitorius HOM05D004368 ORTHO05D004990 1.5e-91 340.5 341 58.4
FAN09G0342 Fragaria x ananassa HOM05D004368 ORTHO05D004990 2.5e-91 339.7 249 71.5
ClCG07G014470 Citrullus lanatus HOM05D004368 ORTHO05D004990 3.3e-91 339.3 234 75.2
Potri.001G166000 Populus trichocarpa HOM05D004368 ORTHO05D004990 4.3e-91 339.0 232 78.0
vmacro06407 Vaccinium macrocarpon HOM05D004368 ORTHO05D004990 4.3e-91 339.0 240 74.2
Sed0018133 Sechium edule HOM05D004368 ORTHO05D004990 7.3e-91 338.2 234 74.4
MELO3C022680.2 Cucumis melo HOM05D004368 ORTHO05D004990 9.6e-91 337.8 230 75.7
MBI02_g13231_MAGBIO Magnolia biondii HOM05D004368 ORTHO05D004990 2.1e-90 336.7 248 72.6
Sc15g0000580 Simmondsia chinensis HOM05D004368 ORTHO05D004990 2.1e-90 336.7 225 78.2
Thecc.06G124200 Theobroma cacao HOM05D004368 ORTHO05D004990 3.6e-90 335.9 349 58.5
GSVIVG01016719001 Vitis vinifera HOM05D004368 ORTHO05D004990 3.6e-90 335.9 247 72.1
Cc06_g01580 Coffea canephora HOM05D004368 ORTHO05D004990 8.1e-90 334.7 242 73.1
Eucgr.F02457 Eucalyptus grandis HOM05D004368 ORTHO05D004990 8.1e-90 334.7 238 73.1
Gohir.D05G141000 Gossypium hirsutum HOM05D004368 ORTHO05D004990 8.1e-90 334.7 225 77.8
FAN02G3674 Fragaria x ananassa HOM05D004368 ORTHO05D004990 1.1e-89 334.3 230 75.2
FAN05G4100 Fragaria x ananassa HOM05D004368 ORTHO05D004990 1.1e-89 334.3 230 75.2
Gorai.009G145200 Gossypium raimondii HOM05D004368 ORTHO05D004990 1.1e-89 334.3 225 77.8
Lj9C535T4 Lonicera japonica HOM05D004368 ORTHO05D004990 1.1e-89 334.3 240 73.3
Peaxi162Scf00043g02929 Petunia axillaris HOM05D004368 ORTHO05D004990 1.1e-89 334.3 231 74.9
Ah.15g095150 Amaranthus hybridus HOM05D004368 ORTHO05D004990 1.4e-89 334.0 233 73.8
FvH4_6g35160 Fragaria vesca HOM05D004368 ORTHO05D004990 1.4e-89 334.0 226 76.1
QL05p003761 Quercus lobata HOM05D004368 ORTHO05D004990 1.4e-89 334.0 234 75.2
Gohir.A05G138800 Gossypium hirsutum HOM05D004368 ORTHO05D004990 1.8e-89 333.6 225 77.8
TPR.G29997 Trifolium pratense HOM05D004368 ORTHO05D004990 1.8e-89 333.6 224 75.4
CiPaw.01G216100 Carya illinoinensis HOM05D004368 ORTHO05D004990 2.4e-89 333.2 235 75.3
CANSAT56G3889 Cannabis sativa HOM05D004368 ORTHO05D004990 3.1e-89 332.8 252 71.0
Cpa.g.sc25.148 Carica papaya HOM05D004368 ORTHO05D004990 4.0e-89 332.4 211 82.5
Nitab4.5_0003342g0020 Nicotiana tabacum HOM05D004368 ORTHO05D004990 5.3e-89 332.0 252 70.6
Hma1.2p1_0311F.1_g121230 Hydrangea macrophylla HOM05D004368 ORTHO05D004990 6.9e-89 331.6 219 79.5
TWI23G0003 Tripterygium wilfordii HOM05D004368 ORTHO05D004990 1.2e-88 330.9 224 77.7
Psat4g167320 Pisum sativum HOM05D004368 ORTHO05D004990 1.5e-88 330.5 225 75.1
Nitab4.5_0000845g0110 Nicotiana tabacum HOM05D004368 ORTHO05D004990 2.0e-88 330.1 231 75.3
PGR119G1615 Punica granatum HOM05D004368 ORTHO05D004990 2.0e-88 330.1 224 75.9
RcHm_v2.0_Chr2g0146421 Rosa chinensis HOM05D004368 ORTHO05D004990 2.0e-88 330.1 230 74.8
Peaxi162Scf01157g00111 Petunia axillaris HOM05D004368 ORTHO05D004990 2.6e-88 329.7 253 69.6
HanXRQChr15g0497161 Helianthus annuus HOM05D004368 ORTHO05D004990 3.4e-88 329.3 218 78.0
Hund18675 Selenicereus undatus HOM05D004368 ORTHO05D004990 7.6e-88 328.2 234 73.1
Hma1.2p1_0414F.1_g147650 Hydrangea macrophylla HOM05D004368 ORTHO05D004990 1.3e-87 327.4 237 73.0
Haze_16075 Corylus avellana HOM05D004368 ORTHO05D004990 1.7e-87 327.0 220 78.6
Oeu064511.1 Olea europaea HOM05D004368 ORTHO05D004990 6.4e-87 325.1 210 80.5
PSO386G0078 Papaver somniferum HOM05D004368 ORTHO05D004990 6.4e-87 325.1 335 57.6
Carub.0003s1372 Capsella rubella HOM05D004368 ORTHO05D004990 8.4e-87 324.7 227 74.9
Ca_23409_v3 Cicer arietinum L. HOM05D004368 ORTHO05D004990 1.4e-86 323.9 225 75.6
DCAR_016106 Daucus carota HOM05D004368 ORTHO05D004990 1.4e-86 323.9 216 76.4
MD17G1148400 Malus domestica HOM05D004368 ORTHO05D004990 1.4e-86 323.9 231 73.2
Gorai.010G235500 Gossypium raimondii HOM05D004368 ORTHO05D004990 2.4e-86 323.2 240 69.6
Lj5A32G57 Lonicera japonica HOM05D004368 ORTHO05D004990 2.4e-86 323.2 246 67.9
Gohir.A06G193900 Gossypium hirsutum HOM05D004368 ORTHO05D004990 3.2e-86 322.8 240 69.2
CAN.G941.28 Capsicum annuum HOM05D004368 ORTHO05D004990 5.4e-86 322.0 243 70.8
Medtr8g022040 Medicago truncatula HOM05D004368 ORTHO05D004990 5.4e-86 322.0 221 74.7
Gohir.D06G201700 Gossypium hirsutum HOM05D004368 ORTHO05D004990 7.1e-86 321.6 240 69.2
PGSC0003DMG400003792 Solanum tuberosum HOM05D004368 ORTHO05D004990 7.1e-86 321.6 227 72.7
THA.LOC104822665 Tarenaya hassleriana HOM05D004368 ORTHO05D004990 7.1e-86 321.6 221 77.4
AUR62009921 Chenopodium quinoa HOM05D004368 ORTHO05D004990 9.3e-86 321.2 340 55.3
Aa31LG8G1340 Aethionema arabicum HOM05D004368 ORTHO05D004990 1.2e-85 320.9 226 72.1
ATR0568G120 Amborella trichopoda HOM05D004368 ORTHO05D004990 1.6e-85 320.5 225 75.6
AUR62001444 Chenopodium quinoa HOM05D004368 ORTHO05D004990 1.6e-85 320.5 221 74.7
FAN14G3095 Fragaria x ananassa HOM05D004368 ORTHO05D004990 1.6e-85 320.5 314 58.9
EL10Ac7g16443 Beta vulgaris HOM05D004368 ORTHO05D004990 2.1e-85 320.1 222 75.2
PSO724G0024 Papaver somniferum HOM05D004368 ORTHO05D004990 2.1e-85 320.1 335 56.7
Sopen09g028680 Solanum pennellii HOM05D004368 ORTHO05D004990 2.1e-85 320.1 227 72.7
Sopen09g028700 Solanum pennellii HOM05D004368 ORTHO05D004990 2.1e-85 320.1 226 73.0
Solyc06g008160.4 Solanum lycopersicum HOM05D004368 ORTHO05D004990 2.7e-85 319.7 230 73.5
Solyc09g072880.3 Solanum lycopersicum HOM05D004368 ORTHO05D004990 2.7e-85 319.7 227 72.2
Sopen06g002970 Solanum pennellii HOM05D004368 ORTHO05D004990 2.7e-85 319.7 231 73.2
DCAR_022662 Daucus carota HOM05D004368 ORTHO05D004990 3.5e-85 319.3 228 72.8
CAN.G1487.1 Capsicum annuum HOM05D004368 ORTHO05D004990 6.0e-85 318.5 224 72.8
Glyma.16G010200 Glycine max HOM05D004368 ORTHO05D004990 6.0e-85 318.5 231 71.0
AT3G14110 Arabidopsis thaliana HOM05D004368 ORTHO05D004990 7.9e-85 318.2 227 73.6
AL3G26340 Arabidopsis lyrata HOM05D004368 ORTHO05D004990 1.0e-84 317.8 217 76.0
unitig_27.g24839 Utricularia gibba HOM05D004368 ORTHO05D004990 1.0e-84 317.8 225 74.2
CARHR088970 Cardamine hirsuta HOM05D004368 ORTHO05D004990 1.3e-84 317.4 227 71.4
VMungo0540G1553 Vigna mungo HOM05D004368 ORTHO05D004990 1.3e-84 317.4 225 72.9
Sp3g12370 Schrenkiella parvula HOM05D004368 ORTHO05D004990 1.8e-84 317.0 227 71.8
ECA247G3177 Erigeron canadensis HOM05D004368 ORTHO05D004990 2.3e-84 316.6 219 75.3
MD09G1178400 Malus domestica HOM05D004368 ORTHO05D004990 2.3e-84 316.6 228 72.4
unitig_27.g24862 Utricularia gibba HOM05D004368 ORTHO05D004990 2.3e-84 316.6 225 73.8
C05p53530 Brassica napus HOM05D004368 ORTHO05D004990 3.0e-84 316.2 227 71.8
BolC5t34030H Brassica oleracea HOM05D004368 ORTHO05D004990 3.0e-84 316.2 227 71.8
Lj3g0026199 Lotus japonicus HOM05D004368 ORTHO05D004990 5.1e-84 315.5 231 70.6
Lalb_Chr17g0343461 Lupinus albus HOM05D004368 ORTHO05D004990 5.1e-84 315.5 220 74.1
SalBow5G3644 Salvia bowleyana HOM05D004368 ORTHO05D004990 5.1e-84 315.5 223 74.4
Thhalv10021156m.g Eutrema salsugineum HOM05D004368 ORTHO05D004990 8.7e-84 314.7 227 72.2
Glyma.07G041700 Glycine max HOM05D004368 ORTHO05D004990 8.7e-84 314.7 231 70.1
A05p35340 Brassica napus HOM05D004368 ORTHO05D004990 1.1e-83 314.3 229 72.1
BraA05t22344Z Brassica rapa HOM05D004368 ORTHO05D004990 1.1e-83 314.3 229 72.1
ECA248G3608 Erigeron canadensis HOM05D004368 ORTHO05D004990 2.5e-83 313.2 218 74.8
SalBow5G0362 Salvia bowleyana HOM05D004368 ORTHO05D004990 2.5e-83 313.2 223 74.0
Lsat_1_v5_gn_4_91400 Lactuca sativa HOM05D004368 ORTHO05D004990 7.4e-83 311.6 218 74.3
BcaC01g03958 Brassica carinata HOM05D004368 ORTHO05D004990 1.3e-82 310.8 228 72.4
A03p38620 Brassica napus HOM05D004368 ORTHO05D004990 1.3e-82 310.8 228 72.4
BolC3t16938H Brassica oleracea HOM05D004368 ORTHO05D004990 1.3e-82 310.8 228 72.4
BcaB04g18818 Brassica carinata HOM05D004368 ORTHO05D004990 2.1e-82 310.1 228 71.5
CDE05G2024 Ceratophyllum demersum HOM05D004368 ORTHO05D004990 2.8e-82 309.7 346 53.2
Phvul.006G206500 Phaseolus vulgaris HOM05D004368 ORTHO05D004990 3.7e-82 309.3 254 65.0
unitig_699.g19383 Utricularia gibba HOM05D004368 ORTHO05D004990 6.2e-82 308.5 225 72.4
BraA03t13009Z Brassica rapa HOM05D004368 ORTHO05D004990 8.1e-82 308.1 228 71.9
C03p46730 Brassica napus HOM05D004368 ORTHO05D004990 1.1e-81 307.8 228 71.9
Migut.L01998 Erythranthe guttata HOM05D004368 ORTHO05D004990 1.8e-81 307.0 219 71.7
Sabra01G0127300 Salix brachista HOM05D004368 ORTHO05D004990 6.9e-81 305.1 312 58.3
HanXRQChr09g0277121 Helianthus annuus HOM05D004368 ORTHO05D004990 5.8e-80 302.0 244 68.4
CDE04G0878 Ceratophyllum demersum HOM05D004368 ORTHO05D004990 7.6e-80 301.6 217 70.5
Nn6g35672 Nelumbo nucifera HOM05D004368 ORTHO05D004990 2.9e-79 299.7 360 50.6
HPP92_003012 Vanilla planifolia HOM05D004368 ORTHO05D004990 3.8e-79 299.3 226 69.9
Os01g0510600 Oryza sativa ssp. japonica HOM05D004368 ORTHO05D004990 6.4e-79 298.5 264 63.6
Lalb_Chr04g0253731 Lupinus albus HOM05D004368 ORTHO05D004990 9.3e-78 294.7 220 69.1
Zm00001eb308830 Zea mays HOM05D004368 ORTHO05D004990 8.7e-76 288.1 216 69.9
BcaC05g29122 Brassica carinata HOM05D004368 ORTHO05D004990 2.8e-74 283.1 227 65.6
arahy.Tifrunner.gnm1.ann1.26KYL2 Arachis hypogaea HOM05D004368 ORTHO05D004990 5.3e-73 278.9 234 63.7
arahy.Tifrunner.gnm1.ann1.AFL61P Arachis hypogaea HOM05D004368 ORTHO05D004990 4.2e-70 269.2 177 76.3
Atru.chr1.4073 Acer truncatum HOM05D004368 ORTHO05D004990 5.5e-70 268.9 177 80.2
Nitab4.5_0006980g0020 Nicotiana tabacum HOM05D004368 ORTHO05D004990 5.1e-68 262.3 169 79.9
Os02g0586800 Oryza sativa ssp. japonica HOM05D004368 ORTHO05D004990 1.3e-66 257.7 220 64.1
Gorai.004G102400 Gossypium raimondii HOM05D004368 ORTHO05D004990 9.0e-65 251.5 190 72.1
Nitab4.5_0000326g0270 Nicotiana tabacum HOM05D004368 ORTHO05D004990 7.7e-64 248.4 166 77.1
SGA_v2.0_scaffold110G31269 Striga asiatica HOM05D004368 ORTHO05D004990 4.6e-61 239.2 315 48.9
Atru.chr1.4083 Acer truncatum HOM05D004368 ORTHO05D004990 1.0e-60 238.0 186 71.0
Gorai.001G096600 Gossypium raimondii HOM05D004368 ORTHO05D004990 1.0e-60 238.0 204 65.7
Dinv20409 Davidia involucrata HOM05D004368 ORTHO05D004990 3.0e-60 236.5 173 72.8
Dinv37846 Davidia involucrata HOM05D004368 ORTHO05D004990 6.7e-60 235.3 160 76.2
CDE05G2107 Ceratophyllum demersum HOM05D004368 ORTHO05D004990 2.5e-59 233.4 317 46.1
Mapoly0108s0002 Marchantia polymorpha HOM05D004368 ORTHO05D004990 9.7e-59 231.5 209 60.8
Mapoly0110s0050 Marchantia polymorpha HOM05D004368 ORTHO05D004990 9.7e-59 231.5 209 60.8
FAN05G2230 Fragaria x ananassa HOM05D004368 ORTHO05D004990 2.2e-58 230.3 187 66.8
AagrBONN_evm.TU.Sc2ySwM_228.3011 Anthoceros agrestis HOM05D004368 ORTHO05D004990 3.1e-57 226.5 187 64.2
Gohir.D08G096333 Gossypium hirsutum HOM05D004368 ORTHO05D004990 3.1e-57 226.5 190 67.9
Gohir.D07G090325 Gossypium hirsutum HOM05D004368 ORTHO05D004990 5.3e-57 225.7 173 69.9
Pp3c11_3130 Physcomitrium patens HOM05D004368 ORTHO05D004990 2.5e-54 216.9 185 61.1
CBR_g39266 Chara braunii HOM05D004368 ORTHO05D004990 4.2e-54 216.1 181 64.1
Prupe.3G037600 Prunus persica HOM05D004368 ORTHO05D004990 4.7e-53 212.6 167 68.3
HPP92_027544 Vanilla planifolia HOM05D004368 ORTHO05D004990 5.7e-51 205.7 165 67.3
Rhsim03G0211800 Rhododendron simsii HOM05D004368 ORTHO05D004990 1.5e-48 197.6 248 48.8
SMO141G0180 Selaginella moellendorffii HOM05D004368 ORTHO05D004990 3.5e-48 196.4 185 56.2
Zm00001eb245590 Zea mays HOM05D004368 ORTHO05D004990 4.8e-42 176.0 155 61.9
Cre10.g460050 Chlamydomonas reinhardtii HOM05D004368 ORTHO05D004990 2.3e-28 130.6 241 35.3
TWI14G0995 Tripterygium wilfordii HOM05D004368 ORTHO05D004990 4.0e-28 129.8 272 35.3
PGSC0003DMG400014712 Solanum tuberosum HOM05D004368 ORTHO05D004990 5.9e-24 115.9 68 82.4
PRCOL_00003238 Prasinoderma coloniale HOM05D004368 ORTHO05D004990 1.2e-21 108.2 209 36.4
MCO11G340 Micromonas commoda HOM05D004368 ORTHO05D004990 1.5e-19 101.3 198 33.8
MCO14G328 Micromonas commoda HOM05D004368 ORTHO05D004990 8.3e-18 95.5 326 27.9
PRCOL_00003077 Prasinoderma coloniale HOM05D004368 ORTHO05D004990 1.0e-15 88.6 200 34.0
TAR624G0904 Trochodendron aralioides HOM05D004368 ORTHO05D004990 4.4e-11 73.2 55 69.1
TAR624G0589 Trochodendron aralioides HOM05D004368 ORTHO05D004990 3.7e-10 70.1 50 68.0
CBR_g29854 Chara braunii HOM05D004368 ORTHO05D004990 1.9e-09 67.8 52 67.3
SGA_v2.0_scaffold382G50397 Striga asiatica HOM05D004368 ORTHO05D004990 3.2e-09 67.0 41 70.7
RcHm_v2.0_Chr5g0074611 Rosa chinensis HOM05D004368 ORTHO05D004990 7.8e-08 62.4 58 53.4
MCO15G457 Micromonas commoda HOM05D004368 ORTHO05D268172 1.0e-07 62.0 201 27.9
Nitab4.5_0000780g0100 Nicotiana tabacum HOM05D004368 ORTHO05D004990 3.9e-07 60.1 193 29.0


User provided reference genes

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