Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy7G00940 Aquilegia oxysepala HOM05D004219 ORTHO05D004857 0.0e+00 1600.5 779 100.0
Nn6g35715 Nelumbo nucifera HOM05D004219 ORTHO05D004857 0.0e+00 1221.1 779 77.7
TAR383G0549 Trochodendron aralioides HOM05D004219 ORTHO05D004857 0.0e+00 1217.2 777 76.7
MBI13_g01684_MAGBIO Magnolia biondii HOM05D004219 ORTHO05D004857 0.0e+00 1176.8 778 74.6
TAR624G1175 Trochodendron aralioides HOM05D004219 ORTHO05D004857 0.0e+00 1174.1 787 74.3
Dinv20389 Davidia involucrata HOM05D004219 ORTHO05D004857 0.0e+00 1168.7 777 74.8
CSS0038823 Camellia sinensis var. sinensis HOM05D004219 ORTHO05D004857 0.0e+00 1134.0 779 72.7
CSS0000587 Camellia sinensis var. sinensis HOM05D004219 ORTHO05D004857 0.0e+00 1132.9 779 72.7
Duzib150G0120 Durio zibethinus HOM05D004219 ORTHO05D004857 0.0e+00 1132.1 783 72.5
Manes.16G089900 Manihot esculenta HOM05D004219 ORTHO05D004857 0.0e+00 1129.8 777 72.3
Ciclev10007563m.g Citrus clementina HOM05D004219 ORTHO05D004857 0.0e+00 1129.4 777 72.8
Thecc.09G069400 Theobroma cacao HOM05D004219 ORTHO05D004857 0.0e+00 1129.0 778 72.4
Duzib168G0770 Durio zibethinus HOM05D004219 ORTHO05D004857 0.0e+00 1128.6 778 72.6
Actinidia21828 Actinidia chinensis HOM05D004219 ORTHO05D004857 0.0e+00 1125.9 778 72.6
TWI34G1001 Tripterygium wilfordii HOM05D004219 ORTHO05D004857 0.0e+00 1125.5 779 71.5
TWI63G0110 Tripterygium wilfordii HOM05D004219 ORTHO05D004857 0.0e+00 1119.0 779 71.5
Potri.006G135500 Populus trichocarpa HOM05D004219 ORTHO05D004857 0.0e+00 1116.3 777 72.1
Gohir.A07G017500 Gossypium hirsutum HOM05D004219 ORTHO05D004857 0.0e+00 1111.3 778 72.0
Duzib187G1712 Durio zibethinus HOM05D004219 ORTHO05D004857 0.0e+00 1110.5 778 72.0
GSVIVG01016680001 Vitis vinifera HOM05D004219 ORTHO05D004857 0.0e+00 1110.5 778 71.0
Sabra18G0057200 Salix brachista HOM05D004219 ORTHO05D004857 0.0e+00 1110.1 778 71.9
Gorai.001G018000 Gossypium raimondii HOM05D004219 ORTHO05D004857 0.0e+00 1109.4 778 72.1
GSVIVG01015005001 Vitis vinifera HOM05D004219 ORTHO05D004857 0.0e+00 1106.3 778 72.4
Potri.018G064500 Populus trichocarpa HOM05D004219 ORTHO05D004857 0.0e+00 1105.1 777 71.4
Cfa003467 Carpinus fangiana HOM05D004219 ORTHO05D004857 0.0e+00 1102.0 778 69.9
QL11p003182 Quercus lobata HOM05D004219 ORTHO05D004857 0.0e+00 1100.5 788 71.1
Cc04_g00810 Coffea canephora HOM05D004219 ORTHO05D004857 0.0e+00 1099.0 781 70.8
PSO135G0149 Papaver somniferum HOM05D004219 ORTHO05D004857 0.0e+00 1099.0 784 70.2
Gorai.010G095800 Gossypium raimondii HOM05D004219 ORTHO05D004857 0.0e+00 1097.0 778 71.3
Manes.03G045300 Manihot esculenta HOM05D004219 ORTHO05D004857 0.0e+00 1096.3 777 70.0
Rhsim08G0243800 Rhododendron simsii HOM05D004219 ORTHO05D004857 0.0e+00 1095.9 810 69.1
PSO724G0293 Papaver somniferum HOM05D004219 ORTHO05D004857 0.0e+00 1094.3 786 69.6
Cpa.g.sc82.51 Carica papaya HOM05D004219 ORTHO05D004857 0.0e+00 1093.2 778 70.7
Lj5A30T66 Lonicera japonica HOM05D004219 ORTHO05D004857 0.0e+00 1089.7 774 70.9
CiPaw.01G212300 Carya illinoinensis HOM05D004219 ORTHO05D004857 0.0e+00 1083.9 781 69.7
CiPaw.02G131700 Carya illinoinensis HOM05D004219 ORTHO05D004857 0.0e+00 1082.8 779 69.3
Nitab4.5_0000357g0090 Nicotiana tabacum HOM05D004219 ORTHO05D004857 0.0e+00 1082.0 779 70.1
Nitab4.5_0004589g0030 Nicotiana tabacum HOM05D004219 ORTHO05D004857 0.0e+00 1080.5 779 69.8
Gorai.009G038600 Gossypium raimondii HOM05D004219 ORTHO05D004857 0.0e+00 1080.1 778 70.2
vmacro15080 Vaccinium macrocarpon HOM05D004219 ORTHO05D004857 0.0e+00 1080.1 797 69.3
Gohir.A06G084100 Gossypium hirsutum HOM05D004219 ORTHO05D004857 0.0e+00 1076.2 779 70.3
Gohir.D05G038100 Gossypium hirsutum HOM05D004219 ORTHO05D004857 5.3e-312 1073.5 778 69.9
QL05p001749 Quercus lobata HOM05D004219 ORTHO05D004857 1.1e-310 1069.7 776 69.2
Eucgr.C00764 Eucalyptus grandis HOM05D004219 ORTHO05D004857 3.1e-310 1068.1 777 68.9
CANSAT56G2968 Cannabis sativa HOM05D004219 ORTHO05D004857 6.9e-310 1067.0 776 68.3
CAN.G1721.2 Capsicum annuum HOM05D004219 ORTHO05D004857 6.9e-310 1067.0 779 68.5
Gohir.A05G036600 Gossypium hirsutum HOM05D004219 ORTHO05D004857 6.9e-310 1067.0 777 69.2
Sopen12g024040 Solanum pennellii HOM05D004219 ORTHO05D004857 2.0e-309 1065.4 778 68.0
QL05p001473 Quercus lobata HOM05D004219 ORTHO05D004857 5.8e-309 1063.9 776 68.9
Solyc12g049570.3 Solanum lycopersicum HOM05D004219 ORTHO05D004857 5.8e-309 1063.9 778 68.0
PGSC0003DMG400028852 Solanum tuberosum HOM05D004219 ORTHO05D004857 5.4e-307 1057.4 778 68.1
Peaxi162Scf00177g00619 Petunia axillaris HOM05D004219 ORTHO05D004857 6.0e-306 1053.9 783 68.6
MD17G1153300 Malus domestica HOM05D004219 ORTHO05D004857 1.8e-305 1052.4 777 68.0
Gohir.D06G082300 Gossypium hirsutum HOM05D004219 ORTHO05D004857 8.7e-305 1050.0 778 69.0
Prupe.3G031800 Prunus persica HOM05D004219 ORTHO05D004857 1.1e-304 1049.7 787 67.6
MD09G1173700 Malus domestica HOM05D004219 ORTHO05D004857 3.1e-302 1041.6 779 66.5
DCAR_016092 Daucus carota HOM05D004219 ORTHO05D004857 3.8e-300 1034.6 776 67.3
RcHm_v2.0_Chr2g0147711 Rosa chinensis HOM05D004219 ORTHO05D004857 2.7e-298 1028.5 776 65.9
Glyma.09G074300 Glycine max HOM05D004219 ORTHO05D004857 1.8e-297 1025.8 780 67.8
Hund05707 Selenicereus undatus HOM05D004219 ORTHO05D004857 6.7e-297 1023.8 775 67.4
Cfa002934 Carpinus fangiana HOM05D004219 ORTHO05D004857 1.5e-296 1022.7 748 70.2
FAN09G1853 Fragaria x ananassa HOM05D004219 ORTHO05D004857 4.3e-296 1021.1 780 65.1
FvH4_6g35710 Fragaria vesca HOM05D004219 ORTHO05D004857 5.7e-296 1020.8 780 65.1
FAN14G4832 Fragaria x ananassa HOM05D004219 ORTHO05D004857 5.7e-296 1020.8 780 65.1
HanXRQChr09g0277221 Helianthus annuus HOM05D004219 ORTHO05D004857 7.4e-296 1020.4 766 66.7
Glyma.U031325 Glycine max HOM05D004219 ORTHO05D004857 2.1e-295 1018.8 780 67.1
VMungo1309G2772 Vigna mungo HOM05D004219 ORTHO05D004857 3.7e-295 1018.1 781 66.3
Lj6g0016067 Lotus japonicus HOM05D004219 ORTHO05D004857 6.2e-295 1017.3 781 66.6
Gohir.D07G017300 Gossypium hirsutum HOM05D004219 ORTHO05D004857 1.1e-294 1016.5 778 67.5
Oeu059024.1 Olea europaea HOM05D004219 ORTHO05D004857 4.0e-294 1014.6 779 66.1
Migut.I01126 Erythranthe guttata HOM05D004219 ORTHO05D004857 9.0e-294 1013.4 789 65.0
Glyma.16G013100 Glycine max HOM05D004219 ORTHO05D004857 1.2e-293 1013.1 780 65.1
FAN02G2730 Fragaria x ananassa HOM05D004219 ORTHO05D004857 3.4e-293 1011.5 780 64.5
TAR626G0374 Trochodendron aralioides HOM05D004219 ORTHO05D004857 2.9e-292 1008.4 761 67.4
Medtr2g044550 Medicago truncatula HOM05D004219 ORTHO05D004857 6.5e-292 1007.3 784 65.8
Glyma.07G045100 Glycine max HOM05D004219 ORTHO05D004857 1.1e-291 1006.5 779 64.4
Sc15g0000780 Simmondsia chinensis HOM05D004219 ORTHO05D004857 1.1e-291 1006.5 778 63.0
Phvul.010G123900 Phaseolus vulgaris HOM05D004219 ORTHO05D004857 7.1e-291 1003.8 780 65.0
Phvul.009G223200 Phaseolus vulgaris HOM05D004219 ORTHO05D004857 9.3e-291 1003.4 781 65.7
ATR0099G075 Amborella trichopoda HOM05D004219 ORTHO05D004857 2.7e-290 1001.9 798 65.8
Lalb_Chr08g0232811 Lupinus albus HOM05D004219 ORTHO05D004857 7.9e-290 1000.3 780 65.6
Lj3g0000905 Lotus japonicus HOM05D004219 ORTHO05D004857 1.8e-289 999.2 778 64.5
AUR62025624 Chenopodium quinoa HOM05D004219 ORTHO05D004857 3.0e-289 998.4 807 62.7
ECA232G2871 Erigeron canadensis HOM05D004219 ORTHO05D004857 1.6e-287 992.6 783 65.1
Sp5g18450 Schrenkiella parvula HOM05D004219 ORTHO05D004857 1.5e-285 986.1 776 63.1
CsaV3_3G030980 Cucumis sativus L. HOM05D004219 ORTHO05D004857 2.0e-285 985.7 779 63.7
Thhalv10002415m.g Eutrema salsugineum HOM05D004219 ORTHO05D004857 3.4e-285 984.9 777 63.1
Lalb_Chr17g0343311 Lupinus albus HOM05D004219 ORTHO05D004857 3.4e-285 984.9 777 63.7
Lalb_Chr23g0276141 Lupinus albus HOM05D004219 ORTHO05D004857 4.5e-285 984.6 781 64.3
TPR.G18148 Trifolium pratense HOM05D004219 ORTHO05D004857 1.3e-284 983.0 781 63.5
TPR.G26875 Trifolium pratense HOM05D004219 ORTHO05D004857 1.3e-284 983.0 785 64.7
AL5G21340 Arabidopsis lyrata HOM05D004219 ORTHO05D004857 2.2e-284 982.2 778 63.2
ClCG09G001310 Citrullus lanatus HOM05D004219 ORTHO05D004857 2.9e-284 981.9 782 64.2
Aqoxy7G04168 Aquilegia oxysepala HOM05D004219 ORTHO05D004857 5.0e-284 981.1 770 64.9
Haze_16129 Corylus avellana HOM05D004219 ORTHO05D004857 5.0e-284 981.1 815 62.1
Medtr8g022980 Medicago truncatula HOM05D004219 ORTHO05D004857 5.0e-284 981.1 780 63.5
HPP92_019289 Vanilla planifolia HOM05D004219 ORTHO05D004857 1.1e-283 979.9 780 63.6
MELO3C022696.2 Cucumis melo HOM05D004219 ORTHO05D004857 1.9e-283 979.2 779 63.2
VMungo0331G1133 Vigna mungo HOM05D004219 ORTHO05D004857 1.9e-283 979.2 779 63.7
Carub.0005s0906 Capsella rubella HOM05D004219 ORTHO05D004857 3.2e-283 978.4 777 63.4
AT3G43240 Arabidopsis thaliana HOM05D004219 ORTHO05D004857 4.2e-283 978.0 777 62.9
CDE04G3533 Ceratophyllum demersum HOM05D004219 ORTHO05D004857 1.2e-282 976.5 780 64.6
Psat4g165840 Pisum sativum HOM05D004219 ORTHO05D004857 2.7e-282 975.3 786 62.7
Ca_23428_v3 Cicer arietinum L. HOM05D004219 ORTHO05D004857 4.6e-282 974.5 783 63.1
PGR142G3683 Punica granatum HOM05D004219 ORTHO05D004857 4.6e-282 974.5 778 64.7
Lalb_Chr04g0253891 Lupinus albus HOM05D004219 ORTHO05D004857 1.0e-281 973.4 779 64.1
THA.LOC104799604 Tarenaya hassleriana HOM05D004219 ORTHO05D004857 2.3e-281 972.2 773 64.0
CsaV3_7G034010 Cucumis sativus L. HOM05D004219 ORTHO05D004857 3.9e-281 971.5 783 63.5
Sed0001277 Sechium edule HOM05D004219 ORTHO05D004857 1.1e-280 969.9 780 61.9
CARHR153440 Cardamine hirsuta HOM05D004219 ORTHO05D004857 5.7e-280 967.6 776 62.6
BcaC01g02109 Brassica carinata HOM05D004219 ORTHO05D004857 9.7e-280 966.8 779 62.3
EL10Ac7g16483 Beta vulgaris HOM05D004219 ORTHO05D004857 1.3e-279 966.5 775 64.3
A06p22640 Brassica napus HOM05D004219 ORTHO05D004857 9.1e-278 960.3 780 61.7
Sed0013084 Sechium edule HOM05D004219 ORTHO05D004857 1.2e-277 959.9 778 61.3
BcaB01g01229 Brassica carinata HOM05D004219 ORTHO05D004857 1.0e-276 956.8 781 62.2
BolC3t19092H Brassica oleracea HOM05D004219 ORTHO05D004857 4.2e-275 951.4 783 61.8
COL.COLO4_21198 Corchorus olitorius HOM05D004219 ORTHO05D004857 4.2e-275 951.4 777 64.2
Haze_26074 Corylus avellana HOM05D004219 ORTHO05D004857 9.4e-275 950.3 892 58.9
Sed0013718 Sechium edule HOM05D004219 ORTHO05D004857 2.1e-274 949.1 782 62.1
Zm00001eb313820 Zea mays HOM05D004219 ORTHO05D004857 1.0e-273 946.8 786 61.6
Zm00001eb099960 Zea mays HOM05D004219 ORTHO05D004857 3.5e-269 931.8 785 60.6
ClCG07G014320 Citrullus lanatus HOM05D004219 ORTHO05D004857 7.2e-267 924.1 757 62.2
Aa31LG4G12950 Aethionema arabicum HOM05D004219 ORTHO05D004857 3.9e-265 918.3 795 59.9
Ah.08g217310 Amaranthus hybridus HOM05D004219 ORTHO05D004857 5.2e-265 917.9 775 60.6
Ca_02284_v3 Cicer arietinum L. HOM05D004219 ORTHO05D004857 2.2e-263 912.5 790 62.0
Os08g0451400 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 3.7e-263 911.8 783 59.1
PGR044G2279 Punica granatum HOM05D004219 ORTHO05D004857 4.7e-258 894.8 786 59.3
Hma1.2p1_0229F.1_g097030 Hydrangea macrophylla HOM05D004219 ORTHO05D004857 1.2e-256 890.2 727 62.9
MELO3C024313.2 Cucumis melo HOM05D004219 ORTHO05D004857 2.7e-253 879.0 768 59.6
Lsat_1_v5_gn_4_92081 Lactuca sativa HOM05D004219 ORTHO05D004857 2.9e-252 875.5 734 64.0
unitig_26.g8917 Utricularia gibba HOM05D004219 ORTHO05D004857 4.0e-249 865.1 784 57.7
Eucgr.I02158 Eucalyptus grandis HOM05D004219 ORTHO05D004857 7.7e-245 850.9 770 58.6
SGA_v2.0_scaffold71G23915 Striga asiatica HOM05D004219 ORTHO05D004857 7.7e-245 850.9 780 57.7
arahy.Tifrunner.gnm1.ann1.82J223 Arachis hypogaea HOM05D004219 ORTHO05D004857 1.6e-242 843.2 783 58.4
arahy.Tifrunner.gnm1.ann1.BBC6WZ Arachis hypogaea HOM05D004219 ORTHO05D004857 2.3e-241 839.3 783 58.2
Sabra06G0106200 Salix brachista HOM05D004219 ORTHO05D004857 1.6e-237 826.6 709 62.9
Psat1g137920 Pisum sativum HOM05D004219 ORTHO05D004857 1.2e-224 783.9 690 60.4
AUR62001416 Chenopodium quinoa HOM05D004219 ORTHO05D004857 2.9e-215 752.7 741 54.5
Zm00001eb040700 Zea mays HOM05D004219 ORTHO05D004857 1.2e-189 667.5 778 46.3
Actinidia24435 Actinidia chinensis HOM05D004219 ORTHO05D004857 2.8e-186 656.4 778 48.5
Mapoly0094s0004 Marchantia polymorpha HOM05D004219 ORTHO05D004857 2.9e-183 646.4 764 47.4
Pp3c15_1350 Physcomitrium patens HOM05D004219 ORTHO05D004857 3.9e-172 609.4 783 42.8
SMO133G0025 Selaginella moellendorffii HOM05D004219 ORTHO05D004857 1.1e-171 607.8 806 43.8
Atru.chr7.1780 Acer truncatum HOM05D004219 ORTHO05D004857 7.7e-168 595.1 419 71.8
Pp3c6_26590 Physcomitrium patens HOM05D004219 ORTHO05D004857 6.5e-167 592.0 793 42.9
BraA06t25350Z Brassica rapa HOM05D004219 ORTHO05D004857 6.1e-165 585.5 447 64.4
SEGI_01121 Sequoiadendron giganteum HOM05D004219 ORTHO05D004857 2.7e-157 560.1 791 42.0
arahy.Tifrunner.gnm1.ann1.B45F8N Arachis hypogaea HOM05D004219 ORTHO05D004857 6.7e-148 528.9 391 66.0
arahy.Tifrunner.gnm1.ann1.W70I1I Arachis hypogaea HOM05D004219 ORTHO05D004857 6.7e-148 528.9 391 66.0
unitig_749.g14037 Utricularia gibba HOM05D004219 ORTHO05D004857 8.8e-140 501.9 406 63.3
AagrBONN_evm.TU.Sc2ySwM_344.4361 Anthoceros agrestis HOM05D004219 ORTHO05D004857 7.2e-134 482.3 566 46.8
Atru.chr7.1779 Acer truncatum HOM05D004219 ORTHO05D004857 2.0e-131 474.2 282 80.9
CDE06G0638 Ceratophyllum demersum HOM05D004219 ORTHO05D004857 5.4e-129 466.1 477 54.3
Os08g0451700 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 5.0e-119 433.0 453 49.4
CDE06G2764 Ceratophyllum demersum HOM05D004219 ORTHO05D004857 3.5e-112 410.2 255 77.3
CBR_g66811 Chara braunii HOM05D004219 ORTHO05D004857 2.1e-96 357.8 746 32.7
Os09g0434100 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 2.1e-85 321.2 278 59.0
unitig_749.g14036 Utricularia gibba HOM05D004219 ORTHO05D004857 1.6e-61 241.9 288 47.9
Cre10.g429880 Chlamydomonas reinhardtii HOM05D004219 ORTHO05D004857 1.4e-60 238.8 754 27.1
Medtr8g038730 Medicago truncatula HOM05D004219 ORTHO05D004857 1.0e-58 232.6 189 61.4
Nn5g27342 Nelumbo nucifera HOM05D004219 ORTHO05D004857 4.2e-57 227.3 150 74.0
TAR383G0322 Trochodendron aralioides HOM05D004219 ORTHO05D004857 7.4e-46 189.9 149 67.1
Os09g0434000 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 5.2e-39 167.2 83 83.1
FAN05G1825 Fragaria x ananassa HOM05D004219 ORTHO05D004857 4.8e-29 134.0 65 84.6
Os08g0361000 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 2.7e-27 128.3 176 42.0
Os08g0451500 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 1.9e-25 122.1 142 43.0
AUR62025956 Chenopodium quinoa HOM05D000121 ORTHO05D024978 5.7e-14 84.0 66 59.1
MCO07G528 Micromonas commoda HOM05D004219 ORTHO05D004857 3.1e-12 78.2 103 41.7
BolSC21t60256H Brassica oleracea HOM05D020425 ORTHO05D021983 3.8e-10 71.2 46 71.7
Oeu028234.1 Olea europaea HOM05D004219 ORTHO05D004857 8.6e-10 70.1 73 49.3
C03p67880 Brassica napus HOM05D020425 ORTHO05D021983 2.1e-08 65.5 39 71.8


User provided reference genes

Program Settings