Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy7G00927 Aquilegia oxysepala HOM05D004579 ORTHO05D005376 1.4e-129 466.5 257 100.0
TAR383G0831 Trochodendron aralioides HOM05D004579 ORTHO05D005376 6.6e-60 235.0 257 51.8
Dinv23423 Davidia involucrata HOM05D004579 ORTHO05D005376 4.0e-57 225.7 261 55.6
Nn8g38954 Nelumbo nucifera HOM05D004579 ORTHO05D005376 1.3e-55 220.7 261 52.9
GSVIVG01035344001 Vitis vinifera HOM05D004579 ORTHO05D005376 1.1e-54 217.6 175 62.9
MBI01_g16584_MAGBIO Magnolia biondii HOM05D004579 ORTHO05D005376 2.7e-53 213.0 269 49.1
CSS0030937 Camellia sinensis var. sinensis HOM05D004579 ORTHO05D005376 1.8e-52 210.3 262 51.9
Prupe.1G414900 Prunus persica HOM05D004579 ORTHO05D005376 8.7e-52 208.0 265 51.3
Hma1.2p1_1266F.1_g271430 Hydrangea macrophylla HOM05D004579 ORTHO05D005376 1.9e-51 206.8 260 53.1
CANSAT25G0619 Cannabis sativa HOM05D004579 ORTHO05D005376 1.4e-49 200.7 264 50.0
TAR626G1184 Trochodendron aralioides HOM05D004579 ORTHO05D005376 1.8e-49 200.3 206 60.2
Migut.A00154 Erythranthe guttata HOM05D004579 ORTHO05D005376 2.4e-49 199.9 252 50.8
Atru.chr7.2020 Acer truncatum HOM05D004579 ORTHO05D005376 3.1e-49 199.5 265 48.3
Glyma.04G049800 Glycine max HOM05D004579 ORTHO05D005376 3.1e-49 199.5 259 48.6
QL02p103256 Quercus lobata HOM05D004579 ORTHO05D005376 1.2e-48 197.6 257 45.5
CiPaw.15G041800 Carya illinoinensis HOM05D004579 ORTHO05D005376 2.0e-48 196.8 256 49.6
Glyma.06G050800 Glycine max HOM05D004579 ORTHO05D005376 2.0e-48 196.8 259 48.6
TWI34G1837 Tripterygium wilfordii HOM05D004579 ORTHO05D005376 2.6e-48 196.4 262 48.9
DCAR_019057 Daucus carota HOM05D004579 ORTHO05D005376 4.5e-48 195.7 258 52.3
Phvul.009G076200 Phaseolus vulgaris HOM05D004579 ORTHO05D005376 1.3e-47 194.1 262 47.3
Dinv27966 Davidia involucrata HOM05D004579 ORTHO05D005376 2.2e-47 193.4 258 45.0
Manes.03G046600 Manihot esculenta HOM05D004579 ORTHO05D005376 4.9e-47 192.2 260 43.5
QL07p000612 Quercus lobata HOM05D004579 ORTHO05D005376 4.9e-47 192.2 258 44.6
Duzib168G1792 Durio zibethinus HOM05D004579 ORTHO05D005376 8.4e-47 191.4 257 45.1
Gohir.A05G043900 Gossypium hirsutum HOM05D004579 ORTHO05D005376 1.1e-46 191.0 281 48.4
Sabra06G0181300 Salix brachista HOM05D004579 ORTHO05D005376 1.4e-46 190.7 275 51.6
CDE02G1740 Ceratophyllum demersum HOM05D004579 ORTHO05D005376 2.4e-46 189.9 258 50.4
TWI63G0708 Tripterygium wilfordii HOM05D004579 ORTHO05D005376 2.4e-46 189.9 259 51.4
Cc08_g10350 Coffea canephora HOM05D004579 ORTHO05D005376 4.2e-46 189.1 255 47.1
Medtr1g016630 Medicago truncatula HOM05D004579 ORTHO05D005376 7.1e-46 188.3 269 45.7
TPR.G13109 Trifolium pratense HOM05D004579 ORTHO05D005376 7.1e-46 188.3 263 49.8
Cfa017933 Carpinus fangiana HOM05D004579 ORTHO05D005376 9.3e-46 188.0 259 46.7
Duzib187G0056 Durio zibethinus HOM05D004579 ORTHO05D005376 9.3e-46 188.0 257 48.2
Manes.16G077900 Manihot esculenta HOM05D004579 ORTHO05D005376 1.2e-45 187.6 266 50.8
Lsat_1_v5_gn_6_7421 Lactuca sativa HOM05D004579 ORTHO05D005376 2.1e-45 186.8 262 49.2
SGA_v2.0_scaffold88G27218 Striga asiatica HOM05D004579 ORTHO05D005376 2.1e-45 186.8 252 50.0
PSO210G6518 Papaver somniferum HOM05D004579 ORTHO05D005376 2.7e-45 186.4 279 45.9
Gohir.D05G045500 Gossypium hirsutum HOM05D004579 ORTHO05D005376 4.6e-45 185.7 257 52.1
Thecc.09G051200 Theobroma cacao HOM05D004579 ORTHO05D005376 7.9e-45 184.9 257 48.6
MSTRG.11672 Avicennia marina HOM05D004579 ORTHO05D005376 1.0e-44 184.5 256 47.7
Gorai.009G046700 Gossypium raimondii HOM05D004579 ORTHO05D005376 1.8e-44 183.7 256 52.7
Rhsim07G0143600 Rhododendron simsii HOM05D004579 ORTHO05D005376 1.8e-44 183.7 265 46.0
Sc09g0009680 Simmondsia chinensis HOM05D004579 ORTHO05D005376 2.3e-44 183.3 262 49.6
Potri.006G232800 Populus trichocarpa HOM05D004579 ORTHO05D005376 3.9e-44 182.6 270 51.1
Actinidia14703 Actinidia chinensis HOM05D004579 ORTHO05D005376 5.1e-44 182.2 175 56.6
Lalb_Chr22g0355991 Lupinus albus HOM05D004579 ORTHO05D005376 6.7e-44 181.8 262 46.6
Ca_02416_v3 Cicer arietinum L. HOM05D004579 ORTHO05D005376 8.7e-44 181.4 266 48.1
Solyc04g080350.4 Solanum lycopersicum HOM05D004579 ORTHO05D005376 1.5e-43 180.6 252 47.6
PSO210G6474 Papaver somniferum HOM05D004579 ORTHO05D005376 1.9e-43 180.3 284 47.2
Ca_15870_v3 Cicer arietinum L. HOM05D004579 ORTHO05D005376 3.3e-43 179.5 258 42.2
HanXRQChr08g0226451 Helianthus annuus HOM05D004579 ORTHO05D005376 4.3e-43 179.1 258 49.2
HanXRQChr08g0226601 Helianthus annuus HOM05D004579 ORTHO05D005376 4.3e-43 179.1 258 49.2
Lj1g0026801 Lotus japonicus HOM05D004579 ORTHO05D005376 4.3e-43 179.1 287 42.9
PGR031G0410 Punica granatum HOM05D004579 ORTHO05D005376 4.3e-43 179.1 252 44.0
Sopen04g033940 Solanum pennellii HOM05D004579 ORTHO05D005376 4.3e-43 179.1 248 48.0
MELO3C022510.2 Cucumis melo HOM05D004579 ORTHO05D005376 5.6e-43 178.7 262 47.7
Gohir.D07G022900 Gossypium hirsutum HOM05D004579 ORTHO05D005376 5.6e-43 178.7 263 43.7
PGSC0003DMG400005151 Solanum tuberosum HOM05D004579 ORTHO05D005376 5.6e-43 178.7 252 48.0
Psat6g019640 Pisum sativum HOM05D004579 ORTHO05D005376 7.4e-43 178.3 275 41.8
Gorai.001G023600 Gossypium raimondii HOM05D004579 ORTHO05D005376 1.3e-42 177.6 263 43.3
SalBow4G3199 Salvia bowleyana HOM05D004579 ORTHO05D005376 3.7e-42 176.0 260 48.5
Nn6g35393 Nelumbo nucifera HOM05D004579 ORTHO05D005376 4.8e-42 175.6 264 49.6
Psat5g036520 Pisum sativum HOM05D004579 ORTHO05D005376 1.1e-41 174.5 261 45.2
arahy.Tifrunner.gnm1.ann1.C5JVH4 Arachis hypogaea HOM05D004579 ORTHO05D005376 3.1e-41 172.9 261 43.3
VMungo1309G2710 Vigna mungo HOM05D004579 ORTHO05D005376 4.0e-41 172.6 262 48.1
FAN20G3218 Fragaria x ananassa HOM05D004579 ORTHO05D005376 5.3e-41 172.2 268 44.8
PSO017G1019 Papaver somniferum HOM05D004579 ORTHO05D005376 5.3e-41 172.2 183 54.1
Ciclev10009210m.g Citrus clementina HOM05D004579 ORTHO05D005376 6.9e-41 171.8 269 47.2
VMungo0647G1140 Vigna mungo HOM05D004579 ORTHO05D005376 6.9e-41 171.8 256 42.2
ClCG06G000280 Citrullus lanatus HOM05D004579 ORTHO05D005376 9.0e-41 171.4 266 46.6
Oeu037326.2 Olea europaea HOM05D004579 ORTHO05D005376 1.2e-40 171.0 293 40.6
FAN15G2153 Fragaria x ananassa HOM05D004579 ORTHO05D005376 1.5e-40 170.6 268 44.8
Sed0005208 Sechium edule HOM05D004579 ORTHO05D005376 2.0e-40 170.2 263 43.7
FvH4_2g32180 Fragaria vesca HOM05D004579 ORTHO05D005376 2.6e-40 169.9 269 46.5
FAN27G3258 Fragaria x ananassa HOM05D004579 ORTHO05D005376 2.6e-40 169.9 268 44.4
HPP92_014384 Vanilla planifolia HOM05D004579 ORTHO05D005376 3.4e-40 169.5 169 54.4
arahy.Tifrunner.gnm1.ann1.Y2NPND Arachis hypogaea HOM05D004579 ORTHO05D005376 4.5e-40 169.1 269 45.7
Aa31LG8G7240 Aethionema arabicum HOM05D004579 ORTHO05D005376 7.6e-40 168.3 264 44.3
FAN24G0041 Fragaria x ananassa HOM05D004579 ORTHO05D005376 7.6e-40 168.3 269 45.0
BraA05t21726Z Brassica rapa HOM05D004579 ORTHO05D005376 1.0e-39 167.9 264 43.9
COL.COLO4_21028 Corchorus olitorius HOM05D004579 ORTHO05D005376 1.0e-39 167.9 254 41.3
Nitab4.5_0006174g0020 Nicotiana tabacum HOM05D004579 ORTHO05D005376 1.0e-39 167.9 249 47.0
A05p28470 Brassica napus HOM05D004579 ORTHO05D005376 1.7e-39 167.2 267 45.7
Glyma.14G092900 Glycine max HOM05D004579 ORTHO05D005376 1.7e-39 167.2 260 43.1
arahy.Tifrunner.gnm1.ann1.A3GFYF Arachis hypogaea HOM05D004579 ORTHO05D005376 2.2e-39 166.8 269 45.4
arahy.Tifrunner.gnm1.ann1.XC2JTE Arachis hypogaea HOM05D004579 ORTHO05D005376 3.8e-39 166.0 261 42.1
Eucgr.C00634 Eucalyptus grandis HOM05D004579 ORTHO05D005376 3.8e-39 166.0 261 47.5
Thhalv10021403m.g Eutrema salsugineum HOM05D004579 ORTHO05D005376 3.8e-39 166.0 256 40.2
Nitab4.5_0000359g0090 Nicotiana tabacum HOM05D004579 ORTHO05D005376 3.8e-39 166.0 249 46.6
Oeu018654.1 Olea europaea HOM05D004579 ORTHO05D005376 4.9e-39 165.6 182 54.4
ATR0789G072 Amborella trichopoda HOM05D004579 ORTHO05D005376 6.5e-39 165.2 263 43.3
EL10Ac2g03929 Beta vulgaris HOM05D004579 ORTHO05D005376 6.5e-39 165.2 254 43.7
BcaC05g28330 Brassica carinata HOM05D004579 ORTHO05D005376 6.5e-39 165.2 269 45.4
C05p43910 Brassica napus HOM05D004579 ORTHO05D005376 6.5e-39 165.2 269 46.5
BolC5t33107H Brassica oleracea HOM05D004579 ORTHO05D005376 6.5e-39 165.2 269 45.4
Ah.11g044630 Amaranthus hybridus HOM05D004579 ORTHO05D005376 8.4e-39 164.9 251 46.2
CAN.G1226.13 Capsicum annuum HOM05D004579 ORTHO05D005376 1.1e-38 164.5 249 42.2
Nitab4.5_0008290g0030 Nicotiana tabacum HOM05D004579 ORTHO05D005376 3.2e-38 162.9 248 46.0
THA.LOC104811250 Tarenaya hassleriana HOM05D004579 ORTHO05D005376 4.2e-38 162.5 172 50.6
CARHR096140 Cardamine hirsuta HOM05D004579 ORTHO05D005376 5.5e-38 162.2 253 44.7
Sed0027918 Sechium edule HOM05D004579 ORTHO05D005376 5.5e-38 162.2 259 42.1
HanXRQChr09g0251171 Helianthus annuus HOM05D004579 ORTHO05D005376 7.1e-38 161.8 242 51.2
Lj5g0003794 Lotus japonicus HOM05D004579 ORTHO05D005376 7.1e-38 161.8 256 46.1
Sp3g18440 Schrenkiella parvula HOM05D004579 ORTHO05D005376 7.1e-38 161.8 268 45.1
ECA233G0431 Erigeron canadensis HOM05D004579 ORTHO05D005376 9.3e-38 161.4 270 47.0
Zm00001eb356770 Zea mays HOM05D004579 ORTHO05D005376 1.2e-37 161.0 233 45.5
unitig_736.g22340 Utricularia gibba HOM05D004579 ORTHO05D005376 1.6e-37 160.6 262 39.3
Os01g0559200 Oryza sativa ssp. japonica HOM05D004579 ORTHO05D005376 2.7e-37 159.8 272 46.0
PGR142G1482 Punica granatum HOM05D004579 ORTHO05D005376 2.7e-37 159.8 252 42.5
BcaB06g26108 Brassica carinata HOM05D004579 ORTHO05D005376 4.6e-37 159.1 258 46.9
CsaV3_6G006070 Cucumis sativus L. HOM05D004579 ORTHO05D005376 4.6e-37 159.1 260 45.0
Gohir.A07G022140 Gossypium hirsutum HOM05D004579 ORTHO05D005376 4.6e-37 159.1 203 48.3
Lalb_Chr24g0399591 Lupinus albus HOM05D004579 ORTHO05D005376 4.6e-37 159.1 257 46.7
AT3G20430 Arabidopsis thaliana HOM05D004579 ORTHO05D005376 6.0e-37 158.7 261 43.3
Carub.0003s2037 Capsella rubella HOM05D004579 ORTHO05D005376 6.0e-37 158.7 259 44.8
Haze_18215 Corylus avellana HOM05D004579 ORTHO05D005376 6.0e-37 158.7 323 38.7
Peaxi162Scf00436g00719 Petunia axillaris HOM05D004579 ORTHO05D005376 6.0e-37 158.7 249 43.4
AL3G34150 Arabidopsis lyrata HOM05D004579 ORTHO05D005376 2.5e-35 153.3 254 44.1
CSS0042880 Camellia sinensis var. sinensis HOM05D004579 ORTHO05D005376 5.7e-35 152.1 154 53.2
Hund03357 Selenicereus undatus HOM05D004579 ORTHO05D005376 1.4e-33 147.5 292 39.7
AUR62022041 Chenopodium quinoa HOM05D004579 ORTHO05D005376 2.4e-33 146.7 180 45.6
vmacro05280 Vaccinium macrocarpon HOM05D004579 ORTHO05D005376 2.0e-32 143.7 377 36.1
FAN24G1203 Fragaria x ananassa HOM05D004579 ORTHO05D005376 1.0e-31 141.4 269 38.7
PSO063G4337 Papaver somniferum HOM05D004579 ORTHO05D005376 8.5e-31 138.3 231 41.1
SEGI_10906 Sequoiadendron giganteum HOM05D004579 ORTHO05D005376 5.5e-30 135.6 302 36.1
MSTRG.25939 Avicennia marina HOM05D004579 ORTHO05D005376 1.1e-27 127.9 88 65.9
Hund19474 Selenicereus undatus HOM05D004579 ORTHO05D005376 6.3e-26 122.1 371 32.9
TPR.G25353 Trifolium pratense HOM05D004579 ORTHO05D005376 2.9e-23 113.2 138 45.7
Cpa.g.sc84.21 Carica papaya HOM05D004579 ORTHO05D005376 5.1e-20 102.4 248 38.7
CBR_g36456 Chara braunii HOM05D004579 ORTHO05D005376 1.1e-19 101.3 97 50.5
AagrBONN_evm.TU.Sc2ySwM_117.2939 Anthoceros agrestis HOM05D004579 ORTHO05D005376 4.4e-19 99.4 204 33.3
RcHm_v2.0_Chr6g0310501 Rosa chinensis HOM05D004579 ORTHO05D005376 4.4e-19 99.4 142 40.1
Mapoly0091s0021 Marchantia polymorpha HOM05D004579 ORTHO05D005376 9.7e-19 98.2 222 34.2
AUR62009186 Chenopodium quinoa HOM05D004579 ORTHO05D005376 6.3e-18 95.5 141 41.1
Hma1.2p1_1944F.1_g308530 Hydrangea macrophylla HOM05D004579 ORTHO05D005376 4.1e-17 92.8 147 43.5
Pp3c10_2240 Physcomitrium patens HOM05D004579 ORTHO05D005376 9.1e-17 91.7 98 49.0
vmacro00165 Vaccinium macrocarpon HOM05D004579 ORTHO05D005376 1.2e-16 91.3 254 33.5
PGSC0003DMG400032806 Solanum tuberosum HOM05D004579 ORTHO05D005376 5.0e-15 85.9 65 61.5
Phvul.001G033700 Phaseolus vulgaris HOM05D004579 ORTHO05D005376 8.5e-15 85.1 60 60.0
arahy.Tifrunner.gnm1.ann1.E1I8FT Arachis hypogaea HOM05D004579 ORTHO05D005376 7.2e-14 82.0 154 35.7
Actinidia18195 Actinidia chinensis HOM05D004579 ORTHO05D005376 9.4e-14 81.6 126 54.0
TPR.G25355 Trifolium pratense HOM05D004579 ORTHO05D005376 5.2e-12 75.9 125 50.4
RcHm_v2.0_Chr6g0310491 Rosa chinensis HOM05D004579 ORTHO05D005376 2.8e-10 70.1 127 44.1
PSO017G0877 Papaver somniferum HOM05D004579 ORTHO05D005376 5.3e-09 65.9 45 60.0
PSO017G5975 Papaver somniferum HOM05D004579 ORTHO05D005376 5.3e-09 65.9 45 60.0
QL03p011522 Quercus lobata HOM05D004579 ORTHO05D005376 1.2e-08 64.7 58 55.2
MCO09G383 Micromonas commoda HOM05D004579 ORTHO05D005376 5.5e-06 55.8 90 33.3


User provided reference genes

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