Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy7G00894 Aquilegia oxysepala HOM05D005033 ORTHO05D007005 5.8e-308 1060.1 541 100.0
Aqoxy6G00730 Aquilegia oxysepala HOM05D005033 ORTHO05D007005 1.4e-285 985.7 541 93.7
TAR633G0665 Trochodendron aralioides HOM05D005033 ORTHO05D007005 5.4e-237 824.3 541 76.0
Nn8g40819 Nelumbo nucifera HOM05D005033 ORTHO05D007005 4.6e-228 794.7 535 74.0
GSVIVG01034665001 Vitis vinifera HOM05D005033 ORTHO05D007005 5.4e-221 771.2 536 71.5
Duzib130G0002 Durio zibethinus HOM05D005033 ORTHO05D007005 1.3e-219 766.5 520 72.1
Duzib138G0857 Durio zibethinus HOM05D005033 ORTHO05D007005 3.9e-219 765.0 520 71.9
Gohir.D07G190300 Gossypium hirsutum HOM05D005033 ORTHO05D007005 5.2e-216 754.6 520 70.0
ClCG09G006560 Citrullus lanatus HOM05D005033 ORTHO05D007005 2.0e-215 752.7 529 70.9
Eucgr.J01030 Eucalyptus grandis HOM05D005033 ORTHO05D007005 2.0e-215 752.7 537 70.2
Hma1.2p1_0446F.1_g154670 Hydrangea macrophylla HOM05D005033 ORTHO05D007005 2.0e-215 752.7 541 71.5
Solyc05g008190.3 Solanum lycopersicum HOM05D005033 ORTHO05D007005 1.3e-214 750.0 511 72.4
Atru.chr13.2088 Acer truncatum HOM05D005033 ORTHO05D007005 2.2e-214 749.2 523 70.2
Glyma.10G200300 Glycine max HOM05D005033 ORTHO05D007005 2.9e-214 748.8 527 70.2
Glyma.20G190200 Glycine max HOM05D005033 ORTHO05D007005 4.9e-214 748.0 519 70.9
Peaxi162Scf00450g00616 Petunia axillaris HOM05D005033 ORTHO05D007005 4.9e-214 748.0 511 72.6
Sopen05g004030 Solanum pennellii HOM05D005033 ORTHO05D007005 4.9e-214 748.0 511 72.4
Gorai.001G212400 Gossypium raimondii HOM05D005033 ORTHO05D007005 6.4e-214 747.7 518 70.7
CsaV3_2G032850 Cucumis sativus L. HOM05D005033 ORTHO05D007005 1.1e-213 746.9 529 70.9
Gohir.A07G183600 Gossypium hirsutum HOM05D005033 ORTHO05D007005 1.4e-213 746.5 520 70.6
PGR083G2464 Punica granatum HOM05D005033 ORTHO05D007005 1.4e-213 746.5 517 72.0
TWI34G0149 Tripterygium wilfordii HOM05D005033 ORTHO05D007005 2.4e-213 745.7 514 72.8
MELO3C019859.2 Cucumis melo HOM05D005033 ORTHO05D007005 3.2e-213 745.3 529 70.7
VMungo0720G2563 Vigna mungo HOM05D005033 ORTHO05D007005 3.2e-213 745.3 513 71.2
Cc02_g10440 Coffea canephora HOM05D005033 ORTHO05D007005 5.4e-213 744.6 511 71.4
CANSAT11G2161 Cannabis sativa HOM05D005033 ORTHO05D007005 2.1e-212 742.7 523 71.7
Nitab4.5_0004816g0020 Nicotiana tabacum HOM05D005033 ORTHO05D007005 3.5e-212 741.9 531 70.4
CAN.G1334.3 Capsicum annuum HOM05D005033 ORTHO05D007005 4.6e-212 741.5 534 69.3
PGSC0003DMG400030544 Solanum tuberosum HOM05D005033 ORTHO05D007005 7.8e-212 740.7 511 71.6
Hund09612 Selenicereus undatus HOM05D005033 ORTHO05D007005 1.3e-211 740.0 516 70.5
Potri.008G029100 Populus trichocarpa HOM05D005033 ORTHO05D007005 6.6e-211 737.6 540 68.1
Sabra10G0180300 Salix brachista HOM05D005033 ORTHO05D007005 8.7e-211 737.3 544 67.8
Ca_10465_v3 Cicer arietinum L. HOM05D005033 ORTHO05D007005 1.5e-210 736.5 532 68.8
Thecc.01G170700 Theobroma cacao HOM05D005033 ORTHO05D007005 1.9e-210 736.1 521 71.0
Potri.010G232500 Populus trichocarpa HOM05D005033 ORTHO05D007005 4.3e-210 734.9 540 68.5
Actinidia22298 Actinidia chinensis HOM05D005033 ORTHO05D007005 9.6e-210 733.8 540 68.5
Phvul.007G144800 Phaseolus vulgaris HOM05D005033 ORTHO05D007005 4.8e-209 731.5 527 67.7
Lj5g0024582 Lotus japonicus HOM05D005033 ORTHO05D007005 6.9e-208 727.6 523 68.8
Ciclev10003719m.g Citrus clementina HOM05D005033 ORTHO05D007005 2.9e-206 722.2 521 71.2
MD07G1075700 Malus domestica HOM05D005033 ORTHO05D007005 2.9e-206 722.2 529 68.4
AUR62018476 Chenopodium quinoa HOM05D005033 ORTHO05D007005 3.8e-206 721.8 544 66.4
Sc09g0005810 Simmondsia chinensis HOM05D005033 ORTHO05D007005 4.9e-206 721.5 522 66.9
Prupe.2G096600 Prunus persica HOM05D005033 ORTHO05D007005 8.4e-206 720.7 538 66.7
HPP92_022999 Vanilla planifolia HOM05D005033 ORTHO05D007005 3.2e-205 718.8 519 67.8
Sed0023623 Sechium edule HOM05D005033 ORTHO05D007005 5.4e-205 718.0 530 68.3
Lalb_Chr21g0313111 Lupinus albus HOM05D005033 ORTHO05D007005 1.6e-204 716.5 519 67.6
Medtr1g090877 Medicago truncatula HOM05D005033 ORTHO05D007005 1.0e-203 713.8 532 66.2
MSTRG.405 Avicennia marina HOM05D005033 ORTHO05D007005 1.8e-203 713.0 543 66.3
EL10Ac3g05920 Beta vulgaris HOM05D005033 ORTHO05D007005 3.0e-203 712.2 518 67.8
Lj4A548T13 Lonicera japonica HOM05D005033 ORTHO05D007005 6.7e-203 711.1 519 68.0
PSO063G4428 Papaver somniferum HOM05D005033 ORTHO05D007005 1.6e-201 706.4 508 69.3
CSS0020475 Camellia sinensis var. sinensis HOM05D005033 ORTHO05D007005 8.1e-201 704.1 530 67.5
CDE08G1035 Ceratophyllum demersum HOM05D005033 ORTHO05D007005 1.1e-200 703.7 540 66.7
MD13G1165600 Malus domestica HOM05D005033 ORTHO05D007005 3.1e-200 702.2 522 69.2
arahy.Tifrunner.gnm1.ann1.BLA122 Arachis hypogaea HOM05D005033 ORTHO05D007005 3.4e-199 698.7 515 67.0
QL05p060417 Quercus lobata HOM05D005033 ORTHO05D007005 4.5e-199 698.4 520 69.6
PSO339G5947 Papaver somniferum HOM05D005033 ORTHO05D007005 9.9e-199 697.2 506 69.2
Psat6g174240 Pisum sativum HOM05D005033 ORTHO05D007005 2.2e-198 696.0 532 64.1
Lj4A576G37 Lonicera japonica HOM05D005033 ORTHO05D007005 8.4e-198 694.1 519 67.1
Manes.04G062300 Manihot esculenta HOM05D005033 ORTHO05D007005 5.5e-197 691.4 540 65.2
RcHm_v2.0_Chr1g0336741 Rosa chinensis HOM05D005033 ORTHO05D007005 1.3e-195 686.8 542 64.4
Sed0004918 Sechium edule HOM05D005033 ORTHO05D007005 1.8e-195 686.4 519 65.7
COL.COLO4_07176 Corchorus olitorius HOM05D005033 ORTHO05D007005 5.1e-195 684.9 573 61.8
Ah.01g017010 Amaranthus hybridus HOM05D005033 ORTHO05D007005 8.7e-195 684.1 518 66.4
FAN10G0702 Fragaria x ananassa HOM05D005033 ORTHO05D007005 2.8e-193 679.1 541 63.8
BraA05t22654Z Brassica rapa HOM05D005033 ORTHO05D007005 4.8e-193 678.3 537 64.4
FAN03G1010 Fragaria x ananassa HOM05D005033 ORTHO05D007005 1.4e-192 676.8 541 63.6
ECA236G1450 Erigeron canadensis HOM05D005033 ORTHO05D007005 3.1e-192 675.6 515 65.4
arahy.Tifrunner.gnm1.ann1.FAT33H Arachis hypogaea HOM05D005033 ORTHO05D007005 6.9e-192 674.5 568 60.7
CARHR085050 Cardamine hirsuta HOM05D005033 ORTHO05D007005 9.0e-192 674.1 543 64.1
Migut.F01668 Erythranthe guttata HOM05D005033 ORTHO05D007005 1.5e-191 673.3 541 64.1
C05p57510 Brassica napus HOM05D005033 ORTHO05D004473 2.6e-191 672.5 541 63.8
BcaNung06294 Brassica carinata HOM05D005033 ORTHO05D007005 3.4e-191 672.2 537 63.7
CiPaw.12G008100 Carya illinoinensis HOM05D005033 ORTHO05D007005 7.6e-191 671.0 514 67.3
A05p38630 Brassica napus HOM05D005033 ORTHO05D004473 1.0e-190 670.6 540 63.7
BolC1t05387H Brassica oleracea HOM05D005033 ORTHO05D007005 1.7e-190 669.8 537 63.5
Rhsim02G0215300 Rhododendron simsii HOM05D005033 ORTHO05D007005 2.2e-190 669.5 555 64.3
TPR.G37792 Trifolium pratense HOM05D005033 ORTHO05D007005 2.9e-190 669.1 532 63.0
THA.LOC104826968 Tarenaya hassleriana HOM05D005033 ORTHO05D007005 3.8e-190 668.7 455 70.1
Sp3g08810 Schrenkiella parvula HOM05D005033 ORTHO05D007005 4.9e-190 668.3 539 63.6
BolC5t34408H Brassica oleracea HOM05D005033 ORTHO05D004473 6.5e-190 667.9 534 64.0
DCAR_019312 Daucus carota HOM05D005033 ORTHO05D007005 8.4e-190 667.5 518 64.3
BcaNung04933 Brassica carinata HOM05D005033 ORTHO05D007005 1.4e-189 666.8 521 65.1
BcaB04g21233 Brassica carinata HOM05D005033 ORTHO05D007005 1.2e-188 663.7 537 63.5
A01p41690 Brassica napus HOM05D005033 ORTHO05D004473 3.5e-188 662.1 541 62.8
FvH4_7g06900 Fragaria vesca HOM05D005033 ORTHO05D007005 2.3e-187 659.4 526 63.3
ATR0598G298 Amborella trichopoda HOM05D005033 ORTHO05D007005 3.9e-187 658.7 511 63.8
SGA_v2.0_scaffold144G35834 Striga asiatica HOM05D005033 ORTHO05D007005 5.1e-187 658.3 520 63.7
Nitab4.5_0006512g0050 Nicotiana tabacum HOM05D005033 ORTHO05D007005 6.7e-187 657.9 532 64.8
AT3G10530 Arabidopsis thaliana HOM05D005033 ORTHO05D007005 4.3e-186 655.2 541 62.8
AL3G21930 Arabidopsis lyrata HOM05D005033 ORTHO05D007005 5.7e-186 654.8 539 62.2
BraA01t04244Z Brassica rapa HOM05D005033 ORTHO05D007005 1.3e-185 653.7 493 66.1
unitig_899.g15062 Utricularia gibba HOM05D005033 ORTHO05D007005 2.8e-185 652.5 537 61.6
Carub.0003s0977 Capsella rubella HOM05D005033 ORTHO05D007005 3.7e-185 652.1 539 61.6
HanXRQChr04g0126221 Helianthus annuus HOM05D005033 ORTHO05D007005 4.8e-185 651.7 523 62.0
CSS0041797 Camellia sinensis var. sinensis HOM05D005033 ORTHO05D007005 5.3e-184 648.3 522 64.6
Zm00001eb272000 Zea mays HOM05D005033 ORTHO05D007005 5.3e-184 648.3 509 63.3
Thhalv10020478m.g Eutrema salsugineum HOM05D005033 ORTHO05D007005 1.2e-183 647.1 540 61.7
vmacro04570 Vaccinium macrocarpon HOM05D005033 ORTHO05D007005 1.7e-182 643.3 585 60.0
Haze_05486 Corylus avellana HOM05D005033 ORTHO05D007005 2.3e-179 632.9 611 56.5
Aa31LG4G2160 Aethionema arabicum HOM05D005033 ORTHO05D007005 2.8e-177 625.9 526 61.8
Os01g0183100 Oryza sativa ssp. japonica HOM05D005033 ORTHO05D007005 2.8e-177 625.9 514 61.5
Actinidia13190 Actinidia chinensis HOM05D005033 ORTHO05D007005 3.7e-177 625.5 434 71.2
FAN06G3772 Fragaria x ananassa HOM05D005033 ORTHO05D007005 5.0e-174 615.1 541 59.9
Dinv31275 Davidia involucrata HOM05D005033 ORTHO05D007005 8.5e-174 614.4 473 66.6
FAN01G1898 Fragaria x ananassa HOM05D005033 ORTHO05D007005 1.0e-171 607.4 522 60.3
PSO591G0084 Papaver somniferum HOM05D005033 ORTHO05D007005 7.4e-170 601.3 433 69.5
Lsat_1_v5_gn_5_142541 Lactuca sativa HOM05D005033 ORTHO05D007005 9.7e-170 600.9 495 60.6
Oeu027297.1 Olea europaea HOM05D005033 ORTHO05D007005 1.8e-168 596.7 549 57.7
SHI01926 Sapria himalayana HOM05D005033 ORTHO05D007005 9.4e-165 584.3 564 54.6
CSS0012290 Camellia sinensis var. sinensis HOM05D005033 ORTHO05D007005 1.6e-164 583.6 509 62.7
Sc12g0008670 Simmondsia chinensis HOM05D005033 ORTHO05D007005 7.0e-160 568.2 406 68.0
Nitab4.5_0004816g0100 Nicotiana tabacum HOM05D005033 ORTHO05D007005 6.3e-153 545.0 472 60.8
BcaC05g29453 Brassica carinata HOM05D005033 ORTHO05D004473 1.2e-148 530.8 409 65.3
Ciclev10003777m.g Citrus clementina HOM05D005033 ORTHO05D007005 1.1e-144 517.7 508 57.9
SMO367G1111 Selaginella moellendorffii HOM05D005033 ORTHO05D007005 2.7e-143 513.1 522 53.4
Mapoly0082s0024 Marchantia polymorpha HOM05D005033 ORTHO05D007005 7.5e-138 495.0 509 51.1
Pp3c1_3590 Physcomitrium patens HOM05D005033 ORTHO05D007005 9.8e-138 494.6 498 50.4
AagrBONN_evm.TU.Sc2ySwM_362.274 Anthoceros agrestis HOM05D005033 ORTHO05D007005 4.1e-136 489.2 471 52.4
Cre12.g502800 Chlamydomonas reinhardtii HOM05D005033 ORTHO05D007005 1.2e-127 461.1 519 45.5
Prupe.1G365200 Prunus persica HOM05D005033 ORTHO05D007005 3.4e-122 443.0 446 56.7
CBR_g12704 Chara braunii HOM05D005033 ORTHO05D007005 9.2e-120 434.9 543 43.8
MCO04G094 Micromonas commoda HOM05D005033 ORTHO05D007005 6.0e-119 432.2 481 45.7
AUR62020948 Chenopodium quinoa HOM05D005033 ORTHO05D007005 8.3e-113 411.8 311 65.3
Nn2g13935 Nelumbo nucifera HOM05D005033 ORTHO05D007005 7.1e-112 408.7 272 73.2
BcaC05g29452 Brassica carinata HOM05D005033 ORTHO05D007005 1.2e-111 407.9 329 64.4
PRCOL_00001195 Prasinoderma coloniale HOM05D005033 ORTHO05D007005 1.6e-111 407.5 502 44.6
SEGI_20556 Sequoiadendron giganteum HOM05D005033 ORTHO05D007005 1.5e-106 391.0 358 53.6
Thhalv10016037m.g Eutrema salsugineum HOM05D005033 ORTHO05D007005 5.2e-99 365.9 319 57.4
Peaxi162Scf00159g00012 Petunia axillaris HOM05D005033 ORTHO05D007005 1.2e-95 354.8 299 62.5
Cpa.g.sc116.23 Carica papaya HOM05D005033 ORTHO05D007005 4.6e-87 326.2 522 41.2
Cfa025315 Carpinus fangiana HOM05D005033 ORTHO05D007005 3.1e-75 287.0 523 36.7
Actinidia36730 Actinidia chinensis HOM05D005033 ORTHO05D007005 2.8e-36 157.5 105 71.4
RcHm_v2.0_Chr1g0336811 Rosa chinensis HOM05D005033 ORTHO05D007005 1.0e-25 122.5 125 48.8
Peaxi162Scf00159g00111 Petunia axillaris HOM05D005033 ORTHO05D007005 6.8e-22 109.8 76 71.1
RcHm_v2.0_Chr1g0336801 Rosa chinensis HOM05D005033 ORTHO05D007005 1.3e-20 105.5 65 72.3
CAN.G1393.2 Capsicum annuum HOM05D005033 ORTHO05D005387 3.1e-19 100.9 144 43.1
MD08G1003300 Malus domestica HOM05D005033 ORTHO05D036613 4.4e-13 80.5 63 55.6
MD05G1224900 Malus domestica HOM05D005033 ORTHO05D007005 1.3e-12 79.0 58 67.2
MD09G1267900 Malus domestica HOM05D005033 ORTHO05D007005 2.2e-12 78.2 55 70.9
MD08G1003200 Malus domestica HOM05D005033 ORTHO05D245307 2.7e-10 71.2 70 51.4
Aa31sc66G30 Aethionema arabicum HOM05D005033 ORTHO05D007005 1.3e-09 68.9 118 39.8
MBI02_g01118_MAGBIO Magnolia biondii HOM05D000464 ORTHO05D006292 1.5e-08 65.5 240 24.6
arahy.Tifrunner.gnm1.ann1.5U8ZY7 Arachis hypogaea HOM05D005033 ORTHO05D083851 1.2e-07 62.4 57 56.1
arahy.Tifrunner.gnm1.ann1.R7HTY3 Arachis hypogaea HOM05D002393 ORTHO05D002845 1.6e-07 62.0 49 63.3
AL4G28990 Arabidopsis lyrata HOM05D003335 ORTHO05D003853 1.4e-06 58.9 170 24.1
Cpa.g.sc44.4 Carica papaya HOM05D003335 ORTHO05D003853 2.3e-06 58.2 112 26.8


User provided reference genes

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