Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy7G00848 Aquilegia oxysepala HOM05D001638 ORTHO05D005197 4.9e-203 711.1 395 100.0
Nn6g33853 Nelumbo nucifera HOM05D001638 ORTHO05D005197 5.7e-119 431.8 395 64.6
MBI04_g36329_MAGBIO Magnolia biondii HOM05D001638 ORTHO05D005197 7.4e-119 431.4 374 61.8
TAR636G3630 Trochodendron aralioides HOM05D001638 ORTHO05D005197 1.7e-118 430.3 387 64.3
CSS0022011 Camellia sinensis var. sinensis HOM05D001638 ORTHO05D005197 1.2e-116 424.1 343 63.6
Dinv44076 Davidia involucrata HOM05D001638 ORTHO05D005197 2.0e-116 423.3 342 65.2
TAR629G0136 Trochodendron aralioides HOM05D001638 ORTHO05D005197 5.9e-116 421.8 404 62.1
Actinidia40391 Actinidia chinensis HOM05D001638 ORTHO05D005197 2.2e-115 419.9 341 63.3
Manes.01G272000 Manihot esculenta HOM05D001638 ORTHO05D005197 2.2e-115 419.9 348 64.1
Rhsim07G0034600 Rhododendron simsii HOM05D001638 ORTHO05D005197 2.2e-115 419.9 338 64.2
GSVIVG01018246001 Vitis vinifera HOM05D001638 ORTHO05D005197 1.2e-113 414.1 346 63.6
Dinv43635 Davidia involucrata HOM05D001638 ORTHO05D005197 2.7e-113 412.9 341 63.9
vmacro16776 Vaccinium macrocarpon HOM05D001638 ORTHO05D005197 1.0e-112 411.0 340 62.4
Gohir.A13G033800 Gossypium hirsutum HOM05D001638 ORTHO05D005197 2.0e-111 406.8 336 63.4
CiPaw.14G021800 Carya illinoinensis HOM05D001638 ORTHO05D005197 5.7e-111 405.2 343 62.4
Ciclev10015475m.g Citrus clementina HOM05D001638 ORTHO05D005197 5.7e-111 405.2 337 64.4
PGR031G2794 Punica granatum HOM05D001638 ORTHO05D005197 5.7e-111 405.2 334 63.2
Sc02g0002980 Simmondsia chinensis HOM05D001638 ORTHO05D005197 2.8e-110 402.9 342 61.4
Thecc.02G084000 Theobroma cacao HOM05D001638 ORTHO05D005197 4.8e-110 402.1 338 62.4
CANSAT56G0649 Cannabis sativa HOM05D001638 ORTHO05D005197 6.3e-110 401.7 332 63.0
Eucgr.F04452 Eucalyptus grandis HOM05D001638 ORTHO05D005197 1.1e-109 401.0 339 61.9
Ah.03g133920 Amaranthus hybridus HOM05D001638 ORTHO05D005197 1.8e-109 400.2 336 62.8
Potri.019G085100 Populus trichocarpa HOM05D001638 ORTHO05D005197 4.1e-109 399.1 331 62.2
Prupe.2G127200 Prunus persica HOM05D001638 ORTHO05D005197 5.9e-108 395.2 353 61.2
Duzib132G0757 Durio zibethinus HOM05D001638 ORTHO05D005197 2.2e-107 393.3 343 62.1
Gorai.013G036600 Gossypium raimondii HOM05D001638 ORTHO05D005197 3.8e-107 392.5 329 63.2
HanXRQChr14g0428901 Helianthus annuus HOM05D001638 ORTHO05D005197 1.5e-106 390.6 343 60.1
Gohir.D13G032100 Gossypium hirsutum HOM05D001638 ORTHO05D005197 1.9e-106 390.2 323 63.5
Medtr7g007890 Medicago truncatula HOM05D001638 ORTHO05D005197 1.9e-106 390.2 345 58.8
Cfa011091 Carpinus fangiana HOM05D001638 ORTHO05D005197 2.5e-106 389.8 346 60.7
COL.COLO4_25944 Corchorus olitorius HOM05D001638 ORTHO05D005197 7.2e-106 388.3 335 62.7
Lj9C558G6 Lonicera japonica HOM05D001638 ORTHO05D001875 1.6e-105 387.1 370 59.5
arahy.Tifrunner.gnm1.ann1.9JI82G Arachis hypogaea HOM05D001638 ORTHO05D005197 3.6e-105 386.0 340 60.0
arahy.Tifrunner.gnm1.ann1.MQ0E05 Arachis hypogaea HOM05D001638 ORTHO05D005197 3.6e-105 386.0 340 60.0
EL10Ac1g00784 Beta vulgaris HOM05D001638 ORTHO05D005197 6.1e-105 385.2 342 59.4
HanXRQChr01g0007441 Helianthus annuus HOM05D001638 ORTHO05D005197 6.1e-105 385.2 336 59.8
Medtr5g064850 Medicago truncatula HOM05D001638 ORTHO05D005197 1.0e-104 384.4 345 58.0
SGA_v2.0_scaffold5G02962 Striga asiatica HOM05D001638 ORTHO05D005197 1.0e-104 384.4 340 60.9
Cc02_g24880 Coffea canephora HOM05D001638 ORTHO05D005197 6.7e-104 381.7 340 60.0
PSO170G6800 Papaver somniferum HOM05D001638 ORTHO05D005197 6.7e-104 381.7 337 61.7
LjContig00564g0006049 Lotus japonicus HOM05D001638 ORTHO05D005197 8.8e-104 381.3 342 58.8
PSO541G3735 Papaver somniferum HOM05D001638 ORTHO05D005197 8.8e-104 381.3 327 63.3
AUR62023428 Chenopodium quinoa HOM05D001638 ORTHO05D005197 1.2e-103 380.9 342 60.8
MD02G1217000 Malus domestica HOM05D001638 ORTHO05D005197 1.2e-103 380.9 344 59.9
MSTRG.12501 Avicennia marina HOM05D001638 ORTHO05D005197 2.0e-103 380.2 343 57.7
DCAR_023354 Daucus carota HOM05D001638 ORTHO05D005197 2.0e-103 380.2 361 57.9
Ca_04112_v3 Cicer arietinum L. HOM05D001638 ORTHO05D005197 2.6e-103 379.8 340 59.1
Psat0s3614g0040 Pisum sativum HOM05D001638 ORTHO05D005197 1.3e-102 377.5 344 59.6
RcHm_v2.0_Chr1g0346971 Rosa chinensis HOM05D001638 ORTHO05D005197 1.7e-102 377.1 349 59.3
QL04p031108 Quercus lobata HOM05D001638 ORTHO05D005197 6.3e-102 375.2 339 60.5
Sabra19G0096200 Salix brachista HOM05D001638 ORTHO05D005197 6.3e-102 375.2 370 56.8
Lsat_1_v5_gn_4_15080 Lactuca sativa HOM05D001638 ORTHO05D005197 8.2e-102 374.8 348 58.3
Os01g0526200 Oryza sativa ssp. japonica HOM05D001638 ORTHO05D005197 1.8e-101 373.6 333 59.2
TWI23G0567 Tripterygium wilfordii HOM05D001638 ORTHO05D005197 4.1e-101 372.5 337 58.8
MELO3C005976.2 Cucumis melo HOM05D001638 ORTHO05D005197 1.2e-100 370.9 343 57.7
Glyma.18G253900 Glycine max HOM05D001638 ORTHO05D005197 1.2e-100 370.9 340 58.8
Phvul.008G045000 Phaseolus vulgaris HOM05D001638 ORTHO05D005197 1.6e-100 370.5 343 58.0
Glyma.09G089400 Glycine max HOM05D001638 ORTHO05D005197 2.0e-100 370.2 339 58.4
FvH4_7g09810 Fragaria vesca HOM05D001638 ORTHO05D005197 3.5e-100 369.4 349 58.5
PSO017G3357 Papaver somniferum HOM05D001638 ORTHO05D005197 3.5e-100 369.4 302 65.2
Thhalv10004255m.g Eutrema salsugineum HOM05D001638 ORTHO05D005197 4.5e-100 369.0 332 57.8
Sp2g24540 Schrenkiella parvula HOM05D001638 ORTHO05D005197 4.5e-100 369.0 335 58.5
Migut.N01781 Erythranthe guttata HOM05D001638 ORTHO05D005197 5.9e-100 368.6 342 58.8
FAN10G1788 Fragaria x ananassa HOM05D001638 ORTHO05D005197 5.9e-100 368.6 349 57.9
VMungo1383G3402 Vigna mungo HOM05D001638 ORTHO05D005197 5.9e-100 368.6 350 57.4
FAN10G2339 Fragaria x ananassa HOM05D001638 ORTHO05D005197 7.7e-100 368.2 349 58.2
CsaV3_3G007540 Cucumis sativus L. HOM05D001638 ORTHO05D005197 6.5e-99 365.2 338 57.7
Hund17077 Selenicereus undatus HOM05D001638 ORTHO05D005197 6.5e-99 365.2 362 55.0
AT5G61330 Arabidopsis thaliana HOM05D001638 ORTHO05D005197 1.5e-98 364.0 333 57.1
CDE03G0227 Ceratophyllum demersum HOM05D001638 ORTHO05D005197 1.5e-98 364.0 357 55.5
BraA03t13813Z Brassica rapa HOM05D001638 ORTHO05D005197 2.5e-98 363.2 337 58.2
Sed0004454 Sechium edule HOM05D001638 ORTHO05D005197 2.5e-98 363.2 342 56.7
C07p44980 Brassica napus HOM05D001638 ORTHO05D005197 5.5e-98 362.1 336 57.7
Lalb_Chr19g0127051 Lupinus albus HOM05D001638 ORTHO05D005197 9.4e-98 361.3 321 59.8
AL8G37990 Arabidopsis lyrata HOM05D001638 ORTHO05D005197 2.1e-97 360.1 332 56.9
THA.LOC104818326 Tarenaya hassleriana HOM05D001638 ORTHO05D005197 2.1e-97 360.1 339 57.2
A09p07280 Brassica napus HOM05D001638 ORTHO05D005197 2.7e-97 359.8 339 56.0
Solyc01g090470.3 Solanum lycopersicum HOM05D001638 ORTHO05D005197 2.7e-97 359.8 346 57.5
A03p46940 Brassica napus HOM05D001638 ORTHO05D005197 4.7e-97 359.0 335 57.9
FAN01G1872 Fragaria x ananassa HOM05D001638 ORTHO05D005197 4.7e-97 359.0 343 57.7
Carub.0008s2200 Capsella rubella HOM05D001638 ORTHO05D005197 6.1e-97 358.6 333 56.2
CARHR275090 Cardamine hirsuta HOM05D001638 ORTHO05D005197 8.0e-97 358.2 329 57.4
ATR0057G068 Amborella trichopoda HOM05D001638 ORTHO05D005197 1.0e-96 357.8 314 59.9
Sopen01g036260 Solanum pennellii HOM05D001638 ORTHO05D005197 1.0e-96 357.8 346 57.5
CAN.G362.16 Capsicum annuum HOM05D001638 ORTHO05D005197 1.8e-96 357.1 294 63.3
BcaB04g19906 Brassica carinata HOM05D001638 ORTHO05D005197 2.3e-96 356.7 344 55.5
BolC7t45021H Brassica oleracea HOM05D001638 ORTHO05D005197 4.0e-96 355.9 332 57.5
BcaC04g23457 Brassica carinata HOM05D001638 ORTHO05D005197 5.2e-96 355.5 342 55.6
PGSC0003DMG400026041 Solanum tuberosum HOM05D001638 ORTHO05D005197 5.2e-96 355.5 346 56.9
ClCG05G000380 Citrullus lanatus HOM05D001638 ORTHO05D005197 6.8e-96 355.1 341 56.6
TPR.G11809 Trifolium pratense HOM05D001638 ORTHO05D005197 6.8e-96 355.1 370 53.2
Lsat_1_v5_gn_4_70960 Lactuca sativa HOM05D001638 ORTHO05D005197 3.4e-95 352.8 346 55.2
C09p08140 Brassica napus HOM05D001638 ORTHO05D005197 1.7e-94 350.5 337 54.9
BolC9t53726H Brassica oleracea HOM05D001638 ORTHO05D005197 1.7e-94 350.5 337 54.9
unitig_37.g13004 Utricularia gibba HOM05D000186 ORTHO05D001124 2.2e-94 350.1 351 55.0
Zm00001eb333990 Zea mays HOM05D001638 ORTHO05D005197 2.4e-93 346.7 306 60.1
BraA09t36377Z Brassica rapa HOM05D001638 ORTHO05D005197 4.1e-93 345.9 329 55.0
Peaxi162Scf00392g00227 Petunia axillaris HOM05D001638 ORTHO05D005197 1.6e-92 344.0 302 60.9
BcaC06g33229 Brassica carinata HOM05D001638 ORTHO05D005197 3.5e-92 342.8 335 55.8
Aa31LG11G2080 Aethionema arabicum HOM05D001638 ORTHO05D005197 3.8e-91 339.3 299 59.2
SalBow6G5432 Salvia bowleyana HOM05D001638 ORTHO05D005197 6.6e-91 338.6 355 54.1
HPP92_024242 Vanilla planifolia HOM05D001638 ORTHO05D005197 2.5e-90 336.7 342 54.1
Zm00001eb127190 Zea mays HOM05D001638 ORTHO05D005197 4.7e-89 332.4 306 57.8
ECA234G3220 Erigeron canadensis HOM05D001638 ORTHO05D005197 2.6e-87 326.6 298 60.4
DCAR_029773 Daucus carota HOM05D001638 ORTHO05D005197 3.4e-87 326.2 296 59.8
SEGI_12976 Sequoiadendron giganteum HOM05D001638 ORTHO05D005197 1.7e-86 323.9 348 51.7
FAN06G3795 Fragaria x ananassa HOM05D001638 ORTHO05D005197 2.8e-86 323.2 456 45.0
QL01p011221 Quercus lobata HOM05D001638 ORTHO05D005197 7.3e-82 308.5 356 52.5
AL1G10102 Arabidopsis lyrata HOM05D001638 ORTHO05D005197 3.2e-77 293.1 309 52.8
Thhalv10020921m.g Eutrema salsugineum HOM05D001638 ORTHO05D005197 7.8e-76 288.5 312 51.3
Nitab4.5_0000914g0150 Nicotiana tabacum HOM05D001638 ORTHO05D005197 3.7e-70 269.6 305 53.1
Nitab4.5_0010229g0010 Nicotiana tabacum HOM05D001638 ORTHO05D005197 1.1e-64 251.5 235 59.6
Mapoly0029s0122 Marchantia polymorpha HOM05D001638 ORTHO05D005197 1.4e-61 241.1 346 42.5
Pp3c5_7370 Physcomitrium patens HOM05D001638 ORTHO05D005197 1.9e-61 240.7 338 41.4
SGA_v2.0_scaffold131G34466 Striga asiatica HOM05D001638 ORTHO05D005197 2.3e-59 233.8 214 57.5
MD07G1102000 Malus domestica HOM05D001638 ORTHO05D005197 4.4e-55 219.5 219 55.7
SHI03505 Sapria himalayana HOM05D001638 ORTHO05D005197 2.2e-54 217.2 312 44.2
Atru.chr5.164 Acer truncatum HOM05D001638 ORTHO05D005197 1.7e-43 181.0 156 59.6
AUR62013726 Chenopodium quinoa HOM05D001638 ORTHO05D005197 9.6e-42 175.3 146 65.1
Cre13.g587000 Chlamydomonas reinhardtii HOM05D001638 ORTHO05D005197 1.3e-41 174.9 391 30.2
FAN06G4892 Fragaria x ananassa HOM05D001638 ORTHO05D005197 2.0e-39 167.5 154 57.8
MCO04G285 Micromonas commoda HOM05D001638 ORTHO05D005197 4.9e-38 162.9 370 30.8
FAN03G2111 Fragaria x ananassa HOM05D001638 ORTHO05D001690 5.4e-37 159.5 161 54.0
SMO141G0070 Selaginella moellendorffii HOM05D001638 ORTHO05D005197 3.0e-35 153.7 255 36.9
Actinidia12156 Actinidia chinensis HOM05D001638 ORTHO05D005197 6.2e-33 146.0 106 65.1
arahy.Tifrunner.gnm1.ann1.XG8PKW Arachis hypogaea HOM05D001638 ORTHO05D005197 1.1e-32 145.2 177 48.0
Atru.chr5.165 Acer truncatum HOM05D001638 ORTHO05D005197 4.0e-32 143.3 121 64.5
AL4G38750 Arabidopsis lyrata HOM05D001638 ORTHO05D005197 9.9e-31 138.7 182 47.8
Haze_17173 Corylus avellana HOM05D001638 ORTHO05D005197 1.6e-25 121.3 205 43.9
MD02G1263900 Malus domestica HOM05D001638 ORTHO05D005197 4.5e-23 113.2 98 59.2
Actinidia12157 Actinidia chinensis HOM05D001638 ORTHO05D005197 3.9e-19 100.1 64 78.1
Cpa.g.sc116.74 Carica papaya HOM05D001638 ORTHO05D005197 5.1e-19 99.8 82 58.5
MD07G1101900 Malus domestica HOM05D001638 ORTHO05D005197 3.3e-18 97.1 175 36.6
Actinidia12155 Actinidia chinensis HOM05D001638 ORTHO05D005197 5.7e-18 96.3 89 56.2
MD02G1264200 Malus domestica HOM05D001638 ORTHO05D005197 4.8e-17 93.2 68 72.1
arahy.Tifrunner.gnm1.ann1.HIFV4E Arachis hypogaea HOM05D001638 ORTHO05D005197 1.1e-16 92.0 177 35.6
Oeu051899.1 Olea europaea HOM05D001638 ORTHO05D005197 1.1e-16 92.0 64 70.3
AagrBONN_evm.TU.Sc2ySwM_368.1521 Anthoceros agrestis HOM05D001638 ORTHO05D005197 1.4e-16 91.7 100 54.0
MD02G1264000 Malus domestica HOM05D001638 ORTHO05D005197 2.4e-16 90.9 68 69.1
PRCOL_00005874 Prasinoderma coloniale HOM05D001638 ORTHO05D005197 3.1e-16 90.5 347 25.1
arahy.Tifrunner.gnm1.ann1.XV6DNZ Arachis hypogaea HOM05D001638 ORTHO05D005197 4.1e-16 90.1 62 72.6
CBR_g1066 Chara braunii HOM05D001638 ORTHO05D005197 1.5e-15 88.2 164 35.4
FAN06G4261 Fragaria x ananassa HOM05D001638 ORTHO05D005197 1.0e-14 85.5 187 36.9
Oeu021607.1 Olea europaea HOM05D001638 ORTHO05D005197 2.9e-14 84.0 64 62.5
Cpa.g.c42599 Carica papaya HOM05D001638 ORTHO05D005197 2.7e-12 77.4 80 55.0
MD07G1102300 Malus domestica HOM05D001638 ORTHO05D005197 2.7e-12 77.4 114 43.0
arahy.Tifrunner.gnm1.ann1.11FR17 Arachis hypogaea HOM05D001638 ORTHO05D005197 4.6e-12 76.6 61 60.7
FvH4_7g09370 Fragaria vesca HOM05D001638 ORTHO05D005197 7.9e-12 75.9 143 36.4
Cfa024988 Carpinus fangiana HOM05D001638 ORTHO05D124161 5.1e-11 73.2 364 24.2
FAN06G2650 Fragaria x ananassa HOM05D001638 ORTHO05D005197 1.1e-08 65.5 75 49.3
CBR_g1068 Chara braunii HOM05D001638 ORTHO05D005197 1.5e-07 61.6 115 28.7


User provided reference genes

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