Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy7G00799 Aquilegia oxysepala HOM05D004381 ORTHO05D005200 2.1e-136 489.2 276 100.0
TAR623G1292 Trochodendron aralioides HOM05D004381 ORTHO05D005200 8.8e-127 457.2 277 91.7
FAN16G2672 Fragaria x ananassa HOM05D004381 ORTHO05D005200 4.8e-125 451.4 277 91.7
RcHm_v2.0_Chr5g0077111 Rosa chinensis HOM05D004381 ORTHO05D005200 4.8e-125 451.4 277 91.7
FvH4_3g43050 Fragaria vesca HOM05D004381 ORTHO05D005200 1.1e-124 450.3 277 91.3
FAN11G3745 Fragaria x ananassa HOM05D004381 ORTHO05D005200 1.1e-124 450.3 277 91.3
Gorai.004G018900 Gossypium raimondii HOM05D004381 ORTHO05D005200 1.8e-124 449.5 277 91.0
FAN21G3999 Fragaria x ananassa HOM05D004381 ORTHO05D005200 2.4e-124 449.1 277 91.3
Potri.001G018800 Populus trichocarpa HOM05D004381 ORTHO05D005200 2.4e-124 449.1 277 91.7
Prupe.6G023700 Prunus persica HOM05D004381 ORTHO05D005200 2.4e-124 449.1 277 90.3
Gohir.A08G013200 Gossypium hirsutum HOM05D004381 ORTHO05D005200 4.1e-124 448.4 277 91.0
Gohir.D08G023600 Gossypium hirsutum HOM05D004381 ORTHO05D005200 9.1e-124 447.2 277 90.6
Thecc.09G228300 Theobroma cacao HOM05D004381 ORTHO05D005200 9.1e-124 447.2 277 90.6
Atru.chr3.2598 Acer truncatum HOM05D004381 ORTHO05D005200 1.2e-123 446.8 277 91.0
PSO210G6888 Papaver somniferum HOM05D004381 ORTHO05D005200 2.7e-123 445.7 277 90.6
Phvul.L011443 Phaseolus vulgaris HOM05D004381 ORTHO05D005200 2.7e-123 445.7 277 89.2
Cfa009743 Carpinus fangiana HOM05D004381 ORTHO05D005200 5.9e-123 444.5 277 89.5
CiPaw.14G121000 Carya illinoinensis HOM05D004381 ORTHO05D005200 5.9e-123 444.5 277 90.3
CSS0020783 Camellia sinensis var. sinensis HOM05D004381 ORTHO05D005200 7.7e-123 444.1 277 89.9
GSVIVG01025302001 Vitis vinifera HOM05D004381 ORTHO05D005200 7.7e-123 444.1 277 89.9
Cc06_g22560 Coffea canephora HOM05D004381 ORTHO05D005200 1.3e-122 443.4 277 88.4
Duzib150G0594 Durio zibethinus HOM05D004381 ORTHO05D005200 1.3e-122 443.4 277 90.3
Manes.06G166500 Manihot esculenta HOM05D004381 ORTHO05D005200 1.3e-122 443.4 277 89.9
Ciclev10016213m.g Citrus clementina HOM05D004381 ORTHO05D005200 1.7e-122 443.0 277 89.2
COL.COLO4_24848 Corchorus olitorius HOM05D004381 ORTHO05D005200 2.3e-122 442.6 277 89.2
PSO210G5188 Papaver somniferum HOM05D004381 ORTHO05D005200 3.8e-122 441.8 277 89.9
Ca_01288_v3 Cicer arietinum L. HOM05D004381 ORTHO05D005200 6.5e-122 441.0 277 88.1
Migut.D00582 Erythranthe guttata HOM05D004381 ORTHO05D005200 8.6e-122 440.7 277 89.5
TPR.G6819 Trifolium pratense HOM05D004381 ORTHO05D005200 1.1e-121 440.3 277 87.7
Rhsim13G0223600 Rhododendron simsii HOM05D004381 ORTHO05D005200 4.2e-121 438.3 277 88.1
Lsat_1_v5_gn_6_48200 Lactuca sativa HOM05D004381 ORTHO05D005200 5.5e-121 438.0 277 89.2
DCAR_031567 Daucus carota HOM05D004381 ORTHO05D005200 1.2e-120 436.8 276 87.3
Os02g0196000 Oryza sativa ssp. japonica HOM05D004381 ORTHO05D005200 1.2e-120 436.8 277 87.0
MSTRG.21391 Avicennia marina HOM05D004381 ORTHO05D005200 1.6e-120 436.4 277 88.1
MELO3C014607.2 Cucumis melo HOM05D004381 ORTHO05D005200 1.6e-120 436.4 276 88.4
HanXRQChr02g0056281 Helianthus annuus HOM05D004381 ORTHO05D005200 1.6e-120 436.4 277 87.0
QL01p005255 Quercus lobata HOM05D004381 ORTHO05D005200 1.6e-120 436.4 275 88.0
CANSAT35G1357 Cannabis sativa HOM05D004381 ORTHO05D005200 2.8e-120 435.6 277 87.4
Eucgr.J00789 Eucalyptus grandis HOM05D004381 ORTHO05D005200 2.8e-120 435.6 277 87.7
Glyma.13G340900 Glycine max HOM05D004381 ORTHO05D005200 6.1e-120 434.5 277 86.3
MSTRG.18417 Avicennia marina HOM05D004381 ORTHO05D005200 8.0e-120 434.1 277 87.4
MD11G1029400 Malus domestica HOM05D004381 ORTHO05D005200 8.0e-120 434.1 276 89.1
ECA233G0542 Erigeron canadensis HOM05D004381 ORTHO05D005200 1.0e-119 433.7 277 87.0
Hund22064 Selenicereus undatus HOM05D004381 ORTHO05D005200 1.0e-119 433.7 277 87.4
Potri.003G205100 Populus trichocarpa HOM05D004381 ORTHO05D005200 1.4e-119 433.3 277 89.2
Glyma.15G033500 Glycine max HOM05D004381 ORTHO05D005200 1.8e-119 433.0 277 86.3
Medtr2g098150 Medicago truncatula HOM05D004381 ORTHO05D005200 2.3e-119 432.6 277 86.6
CiPaw.13G163200 Carya illinoinensis HOM05D004381 ORTHO05D005200 5.2e-119 431.4 277 86.6
Lj3g0004330 Lotus japonicus HOM05D004381 ORTHO05D005200 5.2e-119 431.4 277 86.6
Sp3g18900 Schrenkiella parvula HOM05D004381 ORTHO05D005200 5.2e-119 431.4 277 85.9
Solyc11g062020.2 Solanum lycopersicum HOM05D004381 ORTHO05D005200 5.2e-119 431.4 277 87.4
Sopen11g023990 Solanum pennellii HOM05D004381 ORTHO05D005200 5.2e-119 431.4 277 87.4
Migut.O00580 Erythranthe guttata HOM05D004381 ORTHO05D005200 1.2e-118 430.3 275 87.6
Sed0000340 Sechium edule HOM05D004381 ORTHO05D005200 1.5e-118 429.9 276 86.2
TWI60G0262 Tripterygium wilfordii HOM05D004381 ORTHO05D005200 1.5e-118 429.9 276 86.6
Nn2g15439 Nelumbo nucifera HOM05D004381 ORTHO05D005200 2.0e-118 429.5 277 87.0
Ah.06g193660 Amaranthus hybridus HOM05D004381 ORTHO05D005200 2.6e-118 429.1 278 85.6
Thhalv10021300m.g Eutrema salsugineum HOM05D004381 ORTHO05D005200 2.6e-118 429.1 277 85.6
Lalb_Chr22g0352331 Lupinus albus HOM05D004381 ORTHO05D005200 2.6e-118 429.1 277 86.3
Peaxi162Scf00029g02914 Petunia axillaris HOM05D004381 ORTHO05D005200 7.5e-118 427.6 277 86.3
VMungo1080G0554 Vigna mungo HOM05D004381 ORTHO05D005200 7.5e-118 427.6 301 81.1
A05p27840 Brassica napus HOM05D004381 ORTHO05D005200 2.8e-117 425.6 274 85.0
THA.LOC104817902 Tarenaya hassleriana HOM05D004381 ORTHO05D005200 6.3e-117 424.5 277 84.8
MD03G1024300 Malus domestica HOM05D004381 ORTHO05D005200 8.3e-117 424.1 276 87.3
BraA05t21671Z Brassica rapa HOM05D004381 ORTHO05D005200 1.1e-116 423.7 274 84.7
Sabra01G0013400 Salix brachista HOM05D004381 ORTHO05D005200 1.1e-116 423.7 321 78.5
AL3G34820 Arabidopsis lyrata HOM05D004381 ORTHO05D005200 5.4e-116 421.4 277 83.8
C05p43180 Brassica napus HOM05D004381 ORTHO05D005200 1.2e-115 420.2 275 84.0
BolC5t33048H Brassica oleracea HOM05D004381 ORTHO05D005200 1.2e-115 420.2 275 84.0
CAN.G71.8 Capsicum annuum HOM05D004381 ORTHO05D005200 3.5e-115 418.7 283 83.4
AT3G20870 Arabidopsis thaliana HOM05D004381 ORTHO05D005200 1.7e-114 416.4 277 82.7
CARHR096750 Cardamine hirsuta HOM05D004381 ORTHO05D005200 2.3e-114 416.0 275 84.4
Oeu035739.1 Olea europaea HOM05D004381 ORTHO05D005200 5.0e-114 414.8 261 88.5
Aa31LG8G7690 Aethionema arabicum HOM05D004381 ORTHO05D005200 1.1e-113 413.7 279 84.2
HPP92_020510 Vanilla planifolia HOM05D004381 ORTHO05D005200 7.3e-113 411.0 277 84.1
SEGI_07837 Sequoiadendron giganteum HOM05D004381 ORTHO05D005200 1.6e-112 409.8 278 83.1
Haze_23102 Corylus avellana HOM05D004381 ORTHO05D005200 4.7e-112 408.3 277 79.4
arahy.Tifrunner.gnm1.ann1.E88S00 Arachis hypogaea HOM05D004381 ORTHO05D005200 5.2e-111 404.8 320 74.4
EL10Ac4g10297 Beta vulgaris HOM05D004381 ORTHO05D005200 5.2e-111 404.8 270 85.2
AUR62000098 Chenopodium quinoa HOM05D004381 ORTHO05D005200 1.2e-110 403.7 274 83.9
Nitab4.5_0000492g0060 Nicotiana tabacum HOM05D004381 ORTHO05D005200 1.5e-110 403.3 261 86.2
Nitab4.5_0002026g0030 Nicotiana tabacum HOM05D004381 ORTHO05D005200 1.5e-110 403.3 261 86.2
Sabra03G0151600 Salix brachista HOM05D004381 ORTHO05D005200 3.4e-110 402.1 318 75.2
ClCG02G023360 Citrullus lanatus HOM05D004381 ORTHO05D005200 2.2e-109 399.4 254 88.2
ATR0605G196 Amborella trichopoda HOM05D004381 ORTHO05D005200 2.9e-109 399.1 263 84.8
MBI04_g13625_MAGBIO Magnolia biondii HOM05D004381 ORTHO05D005200 5.4e-108 394.8 278 80.2
Carub.0003s2085 Capsella rubella HOM05D004381 ORTHO05D005200 7.0e-108 394.4 277 80.9
Nn7g36163 Nelumbo nucifera HOM05D004381 ORTHO05D005200 1.2e-107 393.7 276 81.5
Phvul.011G058500 Phaseolus vulgaris HOM05D004381 ORTHO05D005200 1.2e-107 393.7 275 78.9
Psat7g213080 Pisum sativum HOM05D004381 ORTHO05D005200 3.5e-107 392.1 272 79.4
MSTRG.21390 Avicennia marina HOM05D004381 ORTHO05D005200 1.0e-106 390.6 277 79.8
Lalb_Chr19g0138141 Lupinus albus HOM05D004381 ORTHO05D005200 1.0e-106 390.6 278 79.1
SGA_v2.0_scaffold247G44855 Striga asiatica HOM05D004381 ORTHO05D005200 1.0e-106 390.6 299 72.2
Zm00001eb205960 Zea mays HOM05D004381 ORTHO05D005200 1.9e-105 386.3 281 79.0
AUR62019272 Chenopodium quinoa HOM05D004381 ORTHO05D005200 2.5e-105 386.0 269 77.0
Actinidia16315 Actinidia chinensis HOM05D004381 ORTHO05D005200 4.3e-105 385.2 318 67.9
CDE10G0019 Ceratophyllum demersum HOM05D004381 ORTHO05D005200 4.3e-105 385.2 256 82.4
BcaC05g28200 Brassica carinata HOM05D004381 ORTHO05D005200 5.6e-105 384.8 274 74.5
Lj3g0009499 Lotus japonicus HOM05D004381 ORTHO05D005200 1.2e-104 383.6 278 77.7
MBI01_g27615_MAGBIO Magnolia biondii HOM05D004381 ORTHO05D005200 1.4e-103 380.2 353 62.3
Medtr4g065640 Medicago truncatula HOM05D004381 ORTHO05D005200 3.4e-102 375.6 274 77.4
VMungo1127G1882 Vigna mungo HOM05D004381 ORTHO05D005200 2.9e-101 372.5 262 78.6
arahy.Tifrunner.gnm1.ann1.LPI13M Arachis hypogaea HOM05D004381 ORTHO05D005200 8.3e-101 370.9 260 81.2
vmacro04193 Vaccinium macrocarpon HOM05D004381 ORTHO05D005200 1.1e-100 370.5 256 82.4
CsaV3_4G024140 Cucumis sativus L. HOM05D004381 ORTHO05D005200 3.5e-99 365.5 229 89.1
arahy.Tifrunner.gnm1.ann1.T21L4I Arachis hypogaea HOM05D004381 ORTHO05D005200 3.0e-98 362.5 331 68.3
Duzib168G0673 Durio zibethinus HOM05D004381 ORTHO05D005200 3.3e-97 359.0 230 87.4
Dinv08032 Davidia involucrata HOM05D004381 ORTHO05D005200 9.9e-94 347.4 222 89.2
Zm00001eb213530 Zea mays HOM05D004381 ORTHO05D005200 8.3e-93 344.4 276 66.7
Sc06g0004510 Simmondsia chinensis HOM05D004381 ORTHO05D005200 3.2e-92 342.4 222 86.5
SMO347G0569 Selaginella moellendorffii HOM05D004381 ORTHO05D005200 2.1e-91 339.7 266 72.2
Ca_20572_v3 Cicer arietinum L. HOM05D004381 ORTHO05D005200 2.7e-91 339.3 249 78.3
Ca_30507_v3 Cicer arietinum L. HOM05D004381 ORTHO05D005200 2.7e-91 339.3 249 78.3
Mapoly0039s0091 Marchantia polymorpha HOM05D004381 ORTHO05D005200 2.5e-89 332.8 278 69.1
FAN25G0848 Fragaria x ananassa HOM05D004381 ORTHO05D005200 8.1e-88 327.8 319 65.8
AagrBONN_evm.TU.Sc2ySwM_362.691 Anthoceros agrestis HOM05D004381 ORTHO05D005200 1.8e-87 326.6 281 66.5
Lj1A348T17 Lonicera japonica HOM05D004381 ORTHO05D005200 4.4e-86 322.0 224 84.8
Glyma.11G132500 Glycine max HOM05D004381 ORTHO05D005200 5.8e-86 321.6 273 64.5
Pp3c16_16530 Physcomitrium patens HOM05D004381 ORTHO05D005200 6.4e-85 318.2 283 66.1
arahy.Tifrunner.gnm1.ann1.BUZ3KN Arachis hypogaea HOM05D004381 ORTHO05D005200 6.0e-83 311.6 274 68.6
arahy.Tifrunner.gnm1.ann1.N626J4 Arachis hypogaea HOM05D004381 ORTHO05D005200 6.6e-82 308.1 274 68.2
HanXRQChr17g0534131 Helianthus annuus HOM05D004381 ORTHO05D005200 2.9e-69 266.2 258 60.1
Glyma.12G056900 Glycine max HOM05D004381 ORTHO05D005200 2.1e-67 260.0 186 79.0
Os08g0100200 Oryza sativa ssp. japonica HOM05D004381 ORTHO05D005200 2.3e-66 256.5 274 55.5
arahy.Tifrunner.gnm1.ann1.H592TP Arachis hypogaea HOM05D004381 ORTHO05D005200 9.6e-65 251.1 278 55.0
TPR.G39903 Trifolium pratense HOM05D004381 ORTHO05D005200 1.3e-58 230.7 180 76.7
unitig_26.g10133 Utricularia gibba HOM05D004381 ORTHO05D005200 2.3e-58 229.9 155 76.8
Psat1g173960 Pisum sativum HOM05D004381 ORTHO05D005200 2.4e-55 219.9 145 88.3
Dinv36273 Davidia involucrata HOM05D004381 ORTHO05D005200 3.1e-55 219.5 138 83.3
Dinv36275 Davidia involucrata HOM05D004381 ORTHO05D005200 4.2e-52 209.1 129 84.5
Cpa.g.sc84.75 Carica papaya HOM05D004381 ORTHO05D005200 3.5e-51 206.1 132 81.1
Cre03.g189550 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 9.7e-49 198.0 300 45.7
TPR.G35036 Trifolium pratense HOM05D004381 ORTHO05D005200 2.3e-42 176.8 106 84.9
Psat5g287120 Pisum sativum HOM05D004381 ORTHO05D005200 2.0e-41 173.7 97 90.7
Oeu052046.2 Olea europaea HOM05D004381 ORTHO05D005200 5.3e-39 165.6 90 92.2
Hma1.2p1_0118F.1_g056480 Hydrangea macrophylla HOM05D004381 ORTHO05D005200 1.2e-35 154.5 84 94.0
TWI34G1572 Tripterygium wilfordii HOM05D004381 ORTHO05D005200 6.7e-34 148.7 155 60.0
Gohir.D11G292000 Gossypium hirsutum HOM05D004381 ORTHO05D005200 5.0e-29 132.5 74 90.5
Gorai.007G316100 Gossypium raimondii HOM05D004381 ORTHO05D005200 5.0e-29 132.5 74 90.5
Rhsim13G0223400 Rhododendron simsii HOM05D004381 ORTHO05D005200 5.0e-29 132.5 80 81.2
unitig_26.g10132 Utricularia gibba HOM05D004381 ORTHO05D005200 3.6e-27 126.3 80 77.5
MCO07G525 Micromonas commoda HOM05D004381 ORTHO05D005200 7.7e-22 108.6 262 34.7
CBR_g19660 Chara braunii HOM05D004381 ORTHO05D005200 9.4e-20 101.7 157 44.6
CBR_g35021 Chara braunii HOM05D004381 ORTHO05D005200 3.0e-18 96.7 147 40.8
arahy.Tifrunner.gnm1.ann1.9W75VL Arachis hypogaea HOM05D004381 ORTHO05D005200 5.2e-18 95.9 123 52.0
CBR_g37790 Chara braunii HOM05D004381 ORTHO05D005200 8.8e-18 95.1 149 45.0
arahy.Tifrunner.gnm1.ann1.XL2GL1 Arachis hypogaea HOM05D004381 ORTHO05D005200 1.5e-17 94.4 71 87.3
PRCOL_00002167 Prasinoderma coloniale HOM05D004381 ORTHO05D005200 3.3e-17 93.2 166 38.6
MCO07G169 Micromonas commoda HOM05D004381 ORTHO05D005200 9.7e-17 91.7 157 42.0
Glyma.08G063100 Glycine max HOM05D004381 ORTHO05D005200 1.3e-16 91.3 57 77.2
Psat5g287160 Pisum sativum HOM05D004381 ORTHO05D005200 2.8e-16 90.1 73 72.6
arahy.Tifrunner.gnm1.ann1.0JWP28 Arachis hypogaea HOM05D004381 ORTHO05D005200 4.8e-16 89.4 71 80.3
CBR_g37792 Chara braunii HOM05D004381 ORTHO05D005200 3.1e-15 86.7 158 38.6
Cre01.g066187 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 5.9e-14 82.4 174 32.8
MBI09_g41969_MAGBIO Magnolia biondii HOM05D004381 ORTHO05D005200 5.9e-14 82.4 46 89.1
arahy.Tifrunner.gnm1.ann1.W9WT0A Arachis hypogaea HOM05D000602 ORTHO05D011536 2.5e-12 77.0 46 80.4
arahy.Tifrunner.gnm1.ann1.T6H5I3 Arachis hypogaea HOM05D004381 ORTHO05D005200 3.2e-12 76.6 46 84.8
TPR.G33171 Trifolium pratense HOM05D004381 ORTHO05D005200 2.7e-11 73.6 43 83.7
Cre12.g530350 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 6.1e-11 72.4 157 38.9
Cre12.g530400 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 2.3e-10 70.5 162 34.6
PRCOL_00005627 Prasinoderma coloniale HOM05D004381 ORTHO05D005200 6.8e-10 68.9 269 30.5
Cre09.g392060 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 2.8e-08 63.5 140 41.4
TAR636G1592 Trochodendron aralioides HOM05D004381 ORTHO05D415991 2.0e-06 57.4 38 73.7


User provided reference genes

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