Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy7G00798 Aquilegia oxysepala HOM05D003654 ORTHO05D004176 2.7e-26 121.7 84 100.0
Aqoxy7G00793 Aquilegia oxysepala HOM05D003654 ORTHO05D004176 2.9e-12 75.1 35 97.1
DCAR_022378 Daucus carota HOM05D003654 ORTHO05D004176 7.8e-10 67.0 35 80.0
PGSC0003DMG400027273 Solanum tuberosum HOM05D003654 ORTHO05D004176 7.8e-10 67.0 35 80.0
Cc06_g17070 Coffea canephora HOM05D003654 ORTHO05D004176 1.0e-09 66.6 37 73.0
Sc10g0000210 Simmondsia chinensis HOM05D003654 ORTHO05D004176 1.0e-09 66.6 37 78.4
Manes.10G139300 Manihot esculenta HOM05D003654 ORTHO05D004176 1.3e-09 66.2 37 73.0
TAR633G1637 Trochodendron aralioides HOM05D003654 ORTHO05D004176 1.7e-09 65.9 37 70.3
Aqoxy7G00792 Aquilegia oxysepala HOM05D003654 ORTHO05D004176 2.3e-09 65.5 34 82.4
Thecc.05G154000 Theobroma cacao HOM05D003654 ORTHO05D004176 2.3e-09 65.5 37 75.7
AUR62023084 Chenopodium quinoa HOM05D003654 ORTHO05D004176 3.0e-09 65.1 35 82.9
HanXRQChr03g0062221 Helianthus annuus HOM05D003654 ORTHO05D004176 3.0e-09 65.1 35 77.1
Atru.chr1.1088 Acer truncatum HOM05D003654 ORTHO05D004176 3.9e-09 64.7 35 80.0
DCAR_003222 Daucus carota HOM05D003654 ORTHO05D004176 3.9e-09 64.7 31 90.3
Gohir.D08G164000 Gossypium hirsutum HOM05D003654 ORTHO05D004176 3.9e-09 64.7 37 73.0
Gorai.004G171000 Gossypium raimondii HOM05D003654 ORTHO05D004176 3.9e-09 64.7 37 73.0
Solyc04g015700.1 Solanum lycopersicum HOM05D003654 ORTHO05D004176 3.9e-09 64.7 35 77.1
Sopen04g007780 Solanum pennellii HOM05D003654 ORTHO05D004176 3.9e-09 64.7 35 77.1
Atru.chr1.1086 Acer truncatum HOM05D003654 ORTHO05D004176 5.1e-09 64.3 37 70.3
Ciclev10006321m.g Citrus clementina HOM05D003654 ORTHO05D004176 6.6e-09 63.9 36 75.0
Lsat_1_v5_gn_9_28901 Lactuca sativa HOM05D003654 ORTHO05D004176 6.6e-09 63.9 35 74.3
Atru.chr1.1087 Acer truncatum HOM05D003654 ORTHO05D004176 8.7e-09 63.5 37 67.6
ClCG09G003960 Citrullus lanatus HOM05D003654 ORTHO05D004176 8.7e-09 63.5 37 70.3
Actinidia19408 Actinidia chinensis HOM05D003654 ORTHO05D004176 1.1e-08 63.2 32 84.4
CiPaw.09G037900 Carya illinoinensis HOM05D003654 ORTHO05D004176 1.5e-08 62.8 36 72.2
Hma1.2p1_2266F.1_g318450 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 1.5e-08 62.8 84 42.9
MELO3C009681.2 Cucumis melo HOM05D003654 ORTHO05D004176 1.9e-08 62.4 37 67.6
CsaV3_3G039380 Cucumis sativus L. HOM05D003654 ORTHO05D004176 1.9e-08 62.4 37 67.6
DCAR_020491 Daucus carota HOM05D003654 ORTHO05D004176 1.9e-08 62.4 34 73.5
Lsat_1_v5_gn_9_28881 Lactuca sativa HOM05D003654 ORTHO05D004176 1.9e-08 62.4 35 71.4
Lsat_1_v5_gn_9_28921 Lactuca sativa HOM05D003654 ORTHO05D004176 1.9e-08 62.4 35 71.4
Lsat_1_v5_gn_9_28941 Lactuca sativa HOM05D003654 ORTHO05D004176 1.9e-08 62.4 35 71.4
Potri.001G263404 Populus trichocarpa HOM05D003654 ORTHO05D004176 1.9e-08 62.4 37 67.6
Sabra16G0161800 Salix brachista HOM05D003654 ORTHO05D004176 1.9e-08 62.4 37 67.6
Solyc01g087570.2 Solanum lycopersicum HOM05D003654 ORTHO05D004176 1.9e-08 62.4 37 73.0
Sopen01g034540 Solanum pennellii HOM05D003654 ORTHO05D004176 1.9e-08 62.4 37 73.0
PGSC0003DMG400006790 Solanum tuberosum HOM05D003654 ORTHO05D004176 1.9e-08 62.4 37 73.0
Lj9P638T60 Lonicera japonica HOM05D003654 ORTHO05D004176 2.5e-08 62.0 32 81.2
Rhsim07G0057900 Rhododendron simsii HOM05D003654 ORTHO05D004176 2.5e-08 62.0 35 77.1
THA.LOC109117091 Tarenaya hassleriana HOM05D003654 ORTHO05D004176 2.5e-08 62.0 35 77.1
EL10Ac2g04348 Beta vulgaris HOM05D003654 ORTHO05D004176 3.3e-08 61.6 32 81.2
BcaC07g40377 Brassica carinata HOM05D003654 ORTHO05D004176 3.3e-08 61.6 35 74.3
BcaC07g40378 Brassica carinata HOM05D003654 ORTHO05D004176 3.3e-08 61.6 35 74.3
BcaC07g40382 Brassica carinata HOM05D003654 ORTHO05D004176 3.3e-08 61.6 35 74.3
C08p32930 Brassica napus HOM05D003654 ORTHO05D004176 3.3e-08 61.6 35 74.3
BolC8t50897H Brassica oleracea HOM05D003654 ORTHO05D004176 3.3e-08 61.6 35 74.3
BraA09t40486Z Brassica rapa HOM05D003654 ORTHO05D004176 3.3e-08 61.6 35 74.3
Gohir.A09G122400 Gossypium hirsutum HOM05D003654 ORTHO05D004176 3.3e-08 61.6 37 70.3
Gohir.D09G118500 Gossypium hirsutum HOM05D003654 ORTHO05D004176 3.3e-08 61.6 37 70.3
HanXRQChr03g0062211 Helianthus annuus HOM05D003654 ORTHO05D004176 3.3e-08 61.6 32 78.1
MBI17_g05505_MAGBIO Magnolia biondii HOM05D003654 ORTHO05D004176 3.3e-08 61.6 35 74.3
MBI17_g18370_MAGBIO Magnolia biondii HOM05D003654 ORTHO05D004176 3.3e-08 61.6 35 74.3
MBI17_g39959_MAGBIO Magnolia biondii HOM05D003654 ORTHO05D004176 3.3e-08 61.6 35 74.3
MBI17_g45827_MAGBIO Magnolia biondii HOM05D003654 ORTHO05D004176 3.3e-08 61.6 35 74.3
SEGI_17870 Sequoiadendron giganteum HOM05D003654 ORTHO05D004176 3.3e-08 61.6 32 78.1
Carub.0005s2429 Capsella rubella HOM05D003654 ORTHO05D004176 4.3e-08 61.2 35 71.4
CARHR167650 Cardamine hirsuta HOM05D003654 ORTHO05D004176 4.3e-08 61.2 35 71.4
Gohir.D11G328950 Gossypium hirsutum HOM05D003654 ORTHO05D004176 4.3e-08 61.2 32 75.0
Gorai.007G360300 Gossypium raimondii HOM05D003654 ORTHO05D004176 4.3e-08 61.2 32 75.0
Potri.016G055901 Populus trichocarpa HOM05D003654 ORTHO05D004176 4.3e-08 61.2 32 81.2
AUR62009401 Chenopodium quinoa HOM05D003654 ORTHO05D004176 5.6e-08 60.8 31 87.1
ClCG10G017020 Citrullus lanatus HOM05D003654 ORTHO05D004176 5.6e-08 60.8 37 64.9
Ciclev10033218m.g Citrus clementina HOM05D003654 ORTHO05D004176 5.6e-08 60.8 37 67.6
Eucgr.H02820 Eucalyptus grandis HOM05D003654 ORTHO05D004176 5.6e-08 60.8 37 70.3
Gohir.A11G312450 Gossypium hirsutum HOM05D003654 ORTHO05D004176 5.6e-08 60.8 32 71.9
Hma1.2p1_2266F.1_g318430 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 5.6e-08 60.8 35 68.6
Hma1.2p1_2266F.1_g318440 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 5.6e-08 60.8 35 68.6
Peaxi162Scf00071g01140 Petunia axillaris HOM05D003654 ORTHO05D004176 5.6e-08 60.8 37 70.3
CsaV3_7G030860 Cucumis sativus L. HOM05D003654 ORTHO05D004176 7.3e-08 60.5 37 67.6
Gorai.006G136800 Gossypium raimondii HOM05D003654 ORTHO05D004176 7.3e-08 60.5 35 74.3
QL07p000287 Quercus lobata HOM05D003654 ORTHO05D004176 7.3e-08 60.5 37 67.6
Zm00001eb301890 Zea mays HOM05D003654 ORTHO05D004176 7.3e-08 60.5 32 78.1
Gohir.D09G118550 Gossypium hirsutum HOM05D003654 ORTHO05D004176 9.6e-08 60.1 37 70.3
Gorai.006G136900 Gossypium raimondii HOM05D003654 ORTHO05D004176 9.6e-08 60.1 37 70.3
Ah.10g038700 Amaranthus hybridus HOM05D003654 ORTHO05D004176 1.2e-07 59.7 32 78.1
ATR0626G251 Amborella trichopoda HOM05D003654 ORTHO05D004176 1.2e-07 59.7 36 69.4
BcaC02g09939 Brassica carinata HOM05D003654 ORTHO05D004176 1.2e-07 59.7 35 71.4
C04p34970 Brassica napus HOM05D003654 ORTHO05D004176 1.2e-07 59.7 35 71.4
BolC4t25052H Brassica oleracea HOM05D003654 ORTHO05D004176 1.2e-07 59.7 35 71.4
Thhalv10006420m.g Eutrema salsugineum HOM05D003654 ORTHO05D004176 1.2e-07 59.7 35 71.4
Gohir.A08G143100 Gossypium hirsutum HOM05D003654 ORTHO05D004176 1.2e-07 59.7 32 78.1
Nitab4.5_0006340g0010 Nicotiana tabacum HOM05D003654 ORTHO05D004176 1.2e-07 59.7 37 64.9
Sp5g05150 Schrenkiella parvula HOM05D003654 ORTHO05D004176 1.2e-07 59.7 32 75.0
CDE11G0735 Ceratophyllum demersum HOM05D003654 ORTHO05D004176 1.6e-07 59.3 35 71.4
Haze_19862 Corylus avellana HOM05D003654 ORTHO05D004176 1.6e-07 59.3 34 70.6
Manes.07G007900 Manihot esculenta HOM05D003654 ORTHO05D004176 1.6e-07 59.3 30 83.3
Nn2g15256 Nelumbo nucifera HOM05D003654 ORTHO05D004176 1.6e-07 59.3 37 67.6
Nitab4.5_0006340g0020 Nicotiana tabacum HOM05D003654 ORTHO05D004176 1.6e-07 59.3 35 74.3
BraA07t30006Z Brassica rapa HOM05D003654 ORTHO05D004176 2.1e-07 58.9 32 78.1
Nitab4.5_0000733g0010 Nicotiana tabacum HOM05D003654 ORTHO05D004176 2.1e-07 58.9 31 77.4
Sed0002974 Sechium edule HOM05D003654 ORTHO05D004176 2.1e-07 58.9 37 64.9
CiPaw.13G007300 Carya illinoinensis HOM05D003654 ORTHO05D004176 2.8e-07 58.5 32 75.0
Peaxi162Scf00493g00002 Petunia axillaris HOM05D003654 ORTHO05D004176 2.8e-07 58.5 34 73.5
Sabra16G0058500 Salix brachista HOM05D003654 ORTHO05D004176 2.8e-07 58.5 31 80.6
Nn5g30179 Nelumbo nucifera HOM05D003654 ORTHO05D004176 3.6e-07 58.2 32 78.1
Os03g0734500 Oryza sativa ssp. japonica HOM05D003654 ORTHO05D004176 3.6e-07 58.2 32 75.0
CDE03G0266 Ceratophyllum demersum HOM05D005370 ORTHO05D006659 4.7e-07 57.8 32 75.0
Migut.B01278 Erythranthe guttata HOM05D003654 ORTHO05D004176 4.7e-07 57.8 37 67.6
Hma1.2p1_0226F.1_g095570 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 4.7e-07 57.8 35 65.7
Nitab4.5_0000707g0220 Nicotiana tabacum HOM05D003654 ORTHO05D004176 4.7e-07 57.8 35 71.4
Solyc01g087580.3 Solanum lycopersicum HOM05D003654 ORTHO05D004176 4.7e-07 57.8 32 75.0
Sopen01g034550 Solanum pennellii HOM05D003654 ORTHO05D004176 4.7e-07 57.8 32 75.0
Oeu014591.1 Olea europaea HOM05D003654 ORTHO05D004176 6.2e-07 57.4 32 78.1
Sed0004161 Sechium edule HOM05D003654 ORTHO05D004176 6.2e-07 57.4 37 62.2
Eucgr.A02353 Eucalyptus grandis HOM05D003654 ORTHO05D004176 8.1e-07 57.0 31 74.2
HPP92_012497 Vanilla planifolia HOM05D003654 ORTHO05D004176 8.1e-07 57.0 32 71.9
Nn1g05869 Nelumbo nucifera HOM05D003654 ORTHO05D004176 1.1e-06 56.6 32 78.1
Nn2g15259 Nelumbo nucifera HOM05D003654 ORTHO05D004176 1.1e-06 56.6 37 70.3
Peaxi162Scf00138g00032 Petunia axillaris HOM05D003654 ORTHO05D004176 1.1e-06 56.6 32 75.0
Prupe.8G033700 Prunus persica HOM05D003654 ORTHO05D004176 1.1e-06 56.6 30 73.3
Zm00001eb215460 Zea mays HOM05D003654 ORTHO05D004176 1.1e-06 56.6 32 71.9
PGSC0003DMG400006788 Solanum tuberosum HOM05D003654 ORTHO05D004176 1.4e-06 56.2 32 71.9
CANSAT80G0428 Cannabis sativa HOM05D003654 ORTHO05D004176 1.8e-06 55.8 34 67.6
COL.COLO4_28276 Corchorus olitorius HOM05D003654 ORTHO05D004176 1.8e-06 55.8 30 80.0
Eucgr.G03361 Eucalyptus grandis HOM05D003654 ORTHO05D004176 1.8e-06 55.8 30 80.0
Nn7g36270 Nelumbo nucifera HOM05D003654 ORTHO05D004176 1.8e-06 55.8 37 70.3
AL5G39020 Arabidopsis lyrata HOM05D003654 ORTHO05D004176 2.4e-06 55.5 31 74.2
MELO3C023573.2 Cucumis melo HOM05D003654 ORTHO05D004176 2.4e-06 55.5 32 71.9
Manes.08G050800 Manihot esculenta HOM05D003654 ORTHO05D004176 2.4e-06 55.5 30 80.0
QL04p008848 Quercus lobata HOM05D003654 ORTHO05D004176 2.4e-06 55.5 32 71.9
Eucgr.A02351 Eucalyptus grandis HOM05D003654 ORTHO05D004176 3.1e-06 55.1 30 73.3
Psat5g210480 Pisum sativum HOM05D003654 ORTHO05D004176 3.1e-06 55.1 37 59.5
Thecc.01G407700 Theobroma cacao HOM05D003654 ORTHO05D004176 3.1e-06 55.1 30 76.7
TPR.G28386 Trifolium pratense HOM05D003654 ORTHO05D004176 3.1e-06 55.1 37 59.5
Ciclev10006585m.g Citrus clementina HOM05D003654 ORTHO05D004176 4.0e-06 54.7 30 76.7
Atru.chr11.2594 Acer truncatum HOM05D003654 ORTHO05D004176 5.2e-06 54.3 32 71.9
ATR0626G210 Amborella trichopoda HOM05D003654 ORTHO05D004176 5.2e-06 54.3 36 61.1
AT3G57450 Arabidopsis thaliana HOM05D003654 ORTHO05D004176 5.2e-06 54.3 30 73.3
Migut.N01784 Erythranthe guttata HOM05D003654 ORTHO05D004176 5.2e-06 54.3 30 76.7
Nn1g04367 Nelumbo nucifera HOM05D003654 ORTHO05D004176 5.2e-06 54.3 37 64.9
PGSC0003DMG400006789 Solanum tuberosum HOM05D003654 ORTHO05D004176 5.2e-06 54.3 32 68.8
Os10g0417300 Oryza sativa ssp. japonica HOM05D003654 ORTHO05D004176 6.9e-06 53.9 31 71.0
SalBow6G0563 Salvia bowleyana HOM05D003654 ORTHO05D004176 6.9e-06 53.9 29 79.3
Solyc02g071460.2 Solanum lycopersicum HOM05D003654 ORTHO05D004176 6.9e-06 53.9 30 73.3
BcaB02g07603 Brassica carinata HOM05D003654 ORTHO05D004176 9.0e-06 53.5 30 76.7
BcaC08g44845 Brassica carinata HOM05D003654 ORTHO05D004176 9.0e-06 53.5 30 76.7
BolC6t37599H Brassica oleracea HOM05D003654 ORTHO05D004176 9.0e-06 53.5 30 76.7
Hma1.2p1_0493F.1_g164900 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 9.0e-06 53.5 35 60.0
Hma1.2p1_0493F.1_g164905 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 9.0e-06 53.5 35 60.0
MD02G1307300 Malus domestica HOM05D003654 ORTHO05D048609 9.0e-06 53.5 28 82.1
Os07g0185900 Oryza sativa ssp. japonica HOM05D003654 ORTHO05D004176 9.0e-06 53.5 29 79.3
Prupe.7G061500 Prunus persica HOM05D003654 ORTHO05D004176 9.0e-06 53.5 31 71.0
Sed0005344 Sechium edule HOM05D003654 ORTHO05D004176 9.0e-06 53.5 37 56.8


User provided reference genes

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