Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy7G00793 Aquilegia oxysepala HOM05D003654 ORTHO05D004176 3.3e-36 154.5 75 100.0
Aqoxy7G00792 Aquilegia oxysepala HOM05D003654 ORTHO05D004176 2.7e-14 81.6 75 54.7
Ciclev10033218m.g Citrus clementina HOM05D003654 ORTHO05D004176 1.5e-12 75.9 83 45.8
Aqoxy7G00798 Aquilegia oxysepala HOM05D003654 ORTHO05D004176 2.6e-12 75.1 35 97.1
DCAR_022378 Daucus carota HOM05D003654 ORTHO05D004176 2.6e-12 75.1 83 47.0
TAR633G1637 Trochodendron aralioides HOM05D003654 ORTHO05D004176 2.6e-12 75.1 87 44.8
DCAR_003222 Daucus carota HOM05D003654 ORTHO05D004176 4.4e-12 74.3 77 57.1
Hma1.2p1_2266F.1_g318450 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 4.4e-12 74.3 88 47.7
Hma1.2p1_2266F.1_g318440 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 5.7e-12 73.9 88 45.5
AUR62023084 Chenopodium quinoa HOM05D003654 ORTHO05D004176 7.5e-12 73.6 76 56.6
Solyc04g015700.1 Solanum lycopersicum HOM05D003654 ORTHO05D004176 7.5e-12 73.6 84 45.2
Sopen04g007780 Solanum pennellii HOM05D003654 ORTHO05D004176 7.5e-12 73.6 84 45.2
PGSC0003DMG400027273 Solanum tuberosum HOM05D003654 ORTHO05D004176 7.5e-12 73.6 84 46.4
Thecc.05G154000 Theobroma cacao HOM05D003654 ORTHO05D004176 9.7e-12 73.2 88 47.7
Cc06_g17070 Coffea canephora HOM05D003654 ORTHO05D004176 1.3e-11 72.8 42 69.0
Gohir.A11G312450 Gossypium hirsutum HOM05D003654 ORTHO05D004176 1.3e-11 72.8 66 51.5
Atru.chr1.1086 Acer truncatum HOM05D003654 ORTHO05D004176 2.2e-11 72.0 86 44.2
Ciclev10006321m.g Citrus clementina HOM05D003654 ORTHO05D004176 2.2e-11 72.0 87 49.4
Lsat_1_v5_gn_9_28901 Lactuca sativa HOM05D003654 ORTHO05D004176 2.2e-11 72.0 76 46.1
PGSC0003DMG400006790 Solanum tuberosum HOM05D003654 ORTHO05D004176 2.8e-11 71.6 90 46.7
Gohir.D11G328950 Gossypium hirsutum HOM05D003654 ORTHO05D004176 4.8e-11 70.9 66 51.5
Gorai.007G360300 Gossypium raimondii HOM05D003654 ORTHO05D004176 4.8e-11 70.9 66 51.5
HanXRQChr03g0062221 Helianthus annuus HOM05D003654 ORTHO05D004176 6.3e-11 70.5 66 51.5
EL10Ac2g04348 Beta vulgaris HOM05D003654 ORTHO05D004176 8.3e-11 70.1 74 54.1
Manes.10G139300 Manihot esculenta HOM05D003654 ORTHO05D004176 8.3e-11 70.1 39 74.4
Gorai.006G136800 Gossypium raimondii HOM05D003654 ORTHO05D004176 1.1e-10 69.7 75 52.0
Rhsim07G0057900 Rhododendron simsii HOM05D003654 ORTHO05D004176 1.1e-10 69.7 92 48.9
BcaC07g40377 Brassica carinata HOM05D003654 ORTHO05D004176 1.4e-10 69.3 64 54.7
Atru.chr1.1088 Acer truncatum HOM05D003654 ORTHO05D004176 1.8e-10 68.9 38 78.9
Gohir.D09G118500 Gossypium hirsutum HOM05D003654 ORTHO05D004176 1.8e-10 68.9 75 50.7
Gohir.A09G122400 Gossypium hirsutum HOM05D003654 ORTHO05D004176 3.1e-10 68.2 75 50.7
Atru.chr1.1087 Acer truncatum HOM05D003654 ORTHO05D004176 4.1e-10 67.8 38 71.1
Potri.001G263404 Populus trichocarpa HOM05D003654 ORTHO05D004176 4.1e-10 67.8 72 43.1
Carub.0005s2429 Capsella rubella HOM05D003654 ORTHO05D004176 5.3e-10 67.4 64 51.6
ClCG10G017020 Citrullus lanatus HOM05D003654 ORTHO05D004176 5.3e-10 67.4 55 56.4
Hma1.2p1_2266F.1_g318430 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 5.3e-10 67.4 67 47.8
Sc10g0000210 Simmondsia chinensis HOM05D003654 ORTHO05D004176 5.3e-10 67.4 35 82.9
Gohir.D08G164000 Gossypium hirsutum HOM05D003654 ORTHO05D004176 7.0e-10 67.0 77 44.2
Gorai.004G171000 Gossypium raimondii HOM05D003654 ORTHO05D004176 7.0e-10 67.0 77 44.2
Hma1.2p1_0226F.1_g095570 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 7.0e-10 67.0 53 52.8
Sed0005344 Sechium edule HOM05D003654 ORTHO05D004176 7.0e-10 67.0 79 41.8
Ah.10g038700 Amaranthus hybridus HOM05D003654 ORTHO05D004176 9.1e-10 66.6 78 52.6
BcaC07g40378 Brassica carinata HOM05D003654 ORTHO05D004176 9.1e-10 66.6 64 53.1
QL07p000287 Quercus lobata HOM05D003654 ORTHO05D004176 9.1e-10 66.6 39 71.8
Solyc01g087570.2 Solanum lycopersicum HOM05D003654 ORTHO05D004176 9.1e-10 66.6 56 57.1
Lsat_1_v5_gn_9_28921 Lactuca sativa HOM05D003654 ORTHO05D004176 1.2e-09 66.2 38 71.1
Lsat_1_v5_gn_9_28941 Lactuca sativa HOM05D003654 ORTHO05D004176 1.2e-09 66.2 38 71.1
Nitab4.5_0006340g0010 Nicotiana tabacum HOM05D003654 ORTHO05D004176 1.2e-09 66.2 40 67.5
THA.LOC109117091 Tarenaya hassleriana HOM05D003654 ORTHO05D004176 1.2e-09 66.2 38 76.3
Actinidia19408 Actinidia chinensis HOM05D003654 ORTHO05D004176 1.6e-09 65.9 33 84.8
BraA09t40486Z Brassica rapa HOM05D003654 ORTHO05D004176 1.6e-09 65.9 63 52.4
CARHR167650 Cardamine hirsuta HOM05D003654 ORTHO05D004176 1.6e-09 65.9 64 56.2
DCAR_020491 Daucus carota HOM05D003654 ORTHO05D004176 1.6e-09 65.9 45 64.4
Nn7g36270 Nelumbo nucifera HOM05D003654 ORTHO05D004176 1.6e-09 65.9 90 44.4
Sopen01g034540 Solanum pennellii HOM05D003654 ORTHO05D004176 1.6e-09 65.9 54 57.4
BcaC07g40382 Brassica carinata HOM05D003654 ORTHO05D004176 2.0e-09 65.5 63 54.0
C08p32930 Brassica napus HOM05D003654 ORTHO05D004176 2.0e-09 65.5 63 54.0
BolC8t50897H Brassica oleracea HOM05D003654 ORTHO05D004176 2.0e-09 65.5 63 54.0
ClCG09G003960 Citrullus lanatus HOM05D003654 ORTHO05D004176 2.0e-09 65.5 38 71.1
Lsat_1_v5_gn_9_28881 Lactuca sativa HOM05D003654 ORTHO05D004176 2.0e-09 65.5 35 74.3
Nitab4.5_0000733g0010 Nicotiana tabacum HOM05D003654 ORTHO05D004176 2.0e-09 65.5 37 70.3
Ca_08602_v3 Cicer arietinum L. HOM05D003654 ORTHO05D004176 2.7e-09 65.1 72 45.8
MBI17_g05505_MAGBIO Magnolia biondii HOM05D003654 ORTHO05D004176 2.7e-09 65.1 66 48.5
MBI17_g39959_MAGBIO Magnolia biondii HOM05D003654 ORTHO05D004176 2.7e-09 65.1 66 48.5
CDE11G0735 Ceratophyllum demersum HOM05D003654 ORTHO05D004176 3.5e-09 64.7 79 45.6
AUR62009401 Chenopodium quinoa HOM05D003654 ORTHO05D004176 3.5e-09 64.7 75 50.7
Lj9P638T60 Lonicera japonica HOM05D003654 ORTHO05D004176 3.5e-09 64.7 33 81.8
MBI17_g18370_MAGBIO Magnolia biondii HOM05D003654 ORTHO05D004176 3.5e-09 64.7 35 77.1
MBI17_g45827_MAGBIO Magnolia biondii HOM05D003654 ORTHO05D004176 3.5e-09 64.7 35 77.1
SEGI_17870 Sequoiadendron giganteum HOM05D003654 ORTHO05D004176 3.5e-09 64.7 34 76.5
HanXRQChr03g0062211 Helianthus annuus HOM05D003654 ORTHO05D004176 4.5e-09 64.3 33 78.8
Peaxi162Scf00071g01140 Petunia axillaris HOM05D003654 ORTHO05D004176 4.5e-09 64.3 70 47.1
BcaC02g09939 Brassica carinata HOM05D003654 ORTHO05D004176 5.9e-09 63.9 64 50.0
C04p34970 Brassica napus HOM05D003654 ORTHO05D004176 5.9e-09 63.9 64 50.0
BolC4t25052H Brassica oleracea HOM05D003654 ORTHO05D004176 5.9e-09 63.9 64 50.0
CiPaw.09G037900 Carya illinoinensis HOM05D003654 ORTHO05D004176 5.9e-09 63.9 33 78.8
Sed0002974 Sechium edule HOM05D003654 ORTHO05D004176 5.9e-09 63.9 55 56.4
MELO3C009681.2 Cucumis melo HOM05D003654 ORTHO05D004176 7.7e-09 63.5 57 52.6
Zm00001eb301890 Zea mays HOM05D003654 ORTHO05D004176 7.7e-09 63.5 34 76.5
CsaV3_3G039380 Cucumis sativus L. HOM05D003654 ORTHO05D004176 1.0e-08 63.2 35 71.4
Hma1.2p1_0493F.1_g164900 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 1.0e-08 63.2 53 50.9
Hma1.2p1_0493F.1_g164905 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 1.0e-08 63.2 53 50.9
Sabra16G0161800 Salix brachista HOM05D003654 ORTHO05D004176 1.0e-08 63.2 35 71.4
ATR0626G251 Amborella trichopoda HOM05D003654 ORTHO05D004176 1.3e-08 62.8 60 48.3
Eucgr.H02820 Eucalyptus grandis HOM05D003654 ORTHO05D004176 1.3e-08 62.8 38 71.1
Thhalv10006420m.g Eutrema salsugineum HOM05D003654 ORTHO05D004176 1.3e-08 62.8 55 52.7
Nn1g04367 Nelumbo nucifera HOM05D003654 ORTHO05D004176 1.3e-08 62.8 89 43.8
Nitab4.5_0006340g0020 Nicotiana tabacum HOM05D003654 ORTHO05D004176 1.3e-08 62.8 41 65.9
Prupe.8G033700 Prunus persica HOM05D003654 ORTHO05D004176 1.3e-08 62.8 82 41.5
Sopen01g034550 Solanum pennellii HOM05D003654 ORTHO05D004176 1.3e-08 62.8 73 46.6
Haze_19862 Corylus avellana HOM05D003654 ORTHO05D004176 1.7e-08 62.4 41 61.0
CsaV3_7G030860 Cucumis sativus L. HOM05D003654 ORTHO05D004176 1.7e-08 62.4 38 68.4
Migut.B01278 Erythranthe guttata HOM05D003654 ORTHO05D004176 1.7e-08 62.4 74 43.2
Nn2g15256 Nelumbo nucifera HOM05D003654 ORTHO05D004176 1.7e-08 62.4 44 61.4
Peaxi162Scf00138g00032 Petunia axillaris HOM05D003654 ORTHO05D004176 1.7e-08 62.4 75 45.3
Nn2g15259 Nelumbo nucifera HOM05D003654 ORTHO05D004176 2.2e-08 62.0 89 44.9
Nn5g30179 Nelumbo nucifera HOM05D003654 ORTHO05D004176 2.2e-08 62.0 39 69.2
CANSAT80G0428 Cannabis sativa HOM05D003654 ORTHO05D004176 2.9e-08 61.6 41 63.4
Oeu014591.1 Olea europaea HOM05D003654 ORTHO05D004176 2.9e-08 61.6 76 50.0
Peaxi162Scf00493g00002 Petunia axillaris HOM05D003654 ORTHO05D004176 2.9e-08 61.6 34 76.5
Manes.07G007900 Manihot esculenta HOM05D003654 ORTHO05D004176 3.8e-08 61.2 81 46.9
Nitab4.5_0000707g0220 Nicotiana tabacum HOM05D003654 ORTHO05D004176 3.8e-08 61.2 41 63.4
Potri.016G055901 Populus trichocarpa HOM05D003654 ORTHO05D004176 3.8e-08 61.2 32 81.2
Sabra16G0058500 Salix brachista HOM05D003654 ORTHO05D004176 3.8e-08 61.2 88 42.0
Atru.chr11.2594 Acer truncatum HOM05D003654 ORTHO05D004176 5.0e-08 60.8 88 43.2
CDE03G0266 Ceratophyllum demersum HOM05D005370 ORTHO05D006659 5.0e-08 60.8 42 61.9
Glyma.08G106900 Glycine max HOM05D003654 ORTHO05D004176 5.0e-08 60.8 72 45.8
Gohir.D09G118550 Gossypium hirsutum HOM05D003654 ORTHO05D004176 5.0e-08 60.8 35 74.3
Gorai.006G136900 Gossypium raimondii HOM05D003654 ORTHO05D004176 5.0e-08 60.8 35 74.3
Solyc01g087580.3 Solanum lycopersicum HOM05D003654 ORTHO05D004176 5.0e-08 60.8 34 73.5
Solyc02g071460.2 Solanum lycopersicum HOM05D003654 ORTHO05D004176 5.0e-08 60.8 91 44.0
Psat5g210480 Pisum sativum HOM05D003654 ORTHO05D004176 8.5e-08 60.1 73 43.8
HPP92_012497 Vanilla planifolia HOM05D003654 ORTHO05D004176 8.5e-08 60.1 34 70.6
Gohir.A08G143100 Gossypium hirsutum HOM05D003654 ORTHO05D004176 1.1e-07 59.7 32 78.1
Sp5g05150 Schrenkiella parvula HOM05D003654 ORTHO05D004176 1.1e-07 59.7 32 75.0
Sed0004161 Sechium edule HOM05D003654 ORTHO05D004176 1.1e-07 59.7 57 49.1
Sopen08g013660 Solanum pennellii HOM05D003654 ORTHO05D004176 1.1e-07 59.7 77 40.3
ECA234G3018 Erigeron canadensis HOM05D007122 ORTHO05D008918 1.5e-07 59.3 76 44.7
Nn1g05869 Nelumbo nucifera HOM05D003654 ORTHO05D004176 1.5e-07 59.3 33 78.8
Phvul.003G048800 Phaseolus vulgaris HOM05D003654 ORTHO05D004176 1.5e-07 59.3 72 44.4
PGSC0003DMG400006788 Solanum tuberosum HOM05D003654 ORTHO05D004176 1.5e-07 59.3 34 70.6
PGSC0003DMG400006789 Solanum tuberosum HOM05D003654 ORTHO05D004176 1.5e-07 59.3 72 45.8
Zm00001eb215460 Zea mays HOM05D003654 ORTHO05D004176 1.5e-07 59.3 33 72.7
BraA07t30006Z Brassica rapa HOM05D003654 ORTHO05D004176 1.9e-07 58.9 32 78.1
CiPaw.13G007300 Carya illinoinensis HOM05D003654 ORTHO05D004176 2.5e-07 58.5 32 75.0
Eucgr.A02353 Eucalyptus grandis HOM05D003654 ORTHO05D004176 2.5e-07 58.5 75 40.0
Os10g0417300 Oryza sativa ssp. japonica HOM05D003654 ORTHO05D004176 2.5e-07 58.5 37 64.9
Solyc08g044540.1 Solanum lycopersicum HOM05D003654 ORTHO05D004176 2.5e-07 58.5 77 39.0
Hma1.2p1_0589F.1_g184810 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 3.2e-07 58.2 41 56.1
Os03g0734500 Oryza sativa ssp. japonica HOM05D003654 ORTHO05D004176 3.2e-07 58.2 32 75.0
Eucgr.G03361 Eucalyptus grandis HOM05D003654 ORTHO05D004176 4.2e-07 57.8 81 44.4
Nitab4.5_0000808g0050 Nicotiana tabacum HOM05D003654 ORTHO05D004176 4.2e-07 57.8 77 41.6
TPR.G28386 Trifolium pratense HOM05D003654 ORTHO05D004176 4.2e-07 57.8 74 39.2
Glyma.05G150100 Glycine max HOM05D003654 ORTHO05D004176 7.2e-07 57.0 72 45.8
Nitab4.5_0005680g0020 Nicotiana tabacum HOM05D003654 ORTHO05D004176 9.4e-07 56.6 75 44.0
SalBow5G4200 Salvia bowleyana HOM05D003654 ORTHO05D004176 1.2e-06 56.2 34 70.6
Thecc.01G407700 Theobroma cacao HOM05D003654 ORTHO05D004176 1.2e-06 56.2 87 37.9
Zm00001eb061110 Zea mays HOM05D003654 ORTHO05D004176 1.2e-06 56.2 29 82.8
AL5G39020 Arabidopsis lyrata HOM05D003654 ORTHO05D004176 1.6e-06 55.8 64 46.9
Sabra06G0035500 Salix brachista HOM05D000131 ORTHO05D004176 1.6e-06 55.8 58 46.6
Cpa.g.c30295 Carica papaya HOM05D003654 ORTHO05D004176 2.1e-06 55.5 86 39.5
COL.COLO4_28276 Corchorus olitorius HOM05D003654 ORTHO05D004176 2.1e-06 55.5 30 80.0
MELO3C023573.2 Cucumis melo HOM05D003654 ORTHO05D004176 2.1e-06 55.5 32 71.9
QL04p008848 Quercus lobata HOM05D003654 ORTHO05D004176 2.1e-06 55.5 32 71.9
SGA_v2.0_scaffold119G32750 Striga asiatica HOM05D003654 ORTHO05D004176 2.1e-06 55.5 74 41.9
ATR0626G210 Amborella trichopoda HOM05D003654 ORTHO05D004176 2.7e-06 55.1 35 62.9
Manes.08G050800 Manihot esculenta HOM05D003654 ORTHO05D004176 2.7e-06 55.1 30 80.0
Eucgr.A02351 Eucalyptus grandis HOM05D003654 ORTHO05D004176 3.6e-06 54.7 30 73.3
Hma1.2p1_2135F.1_g314830 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 3.6e-06 54.7 46 47.8
Ciclev10006585m.g Citrus clementina HOM05D003654 ORTHO05D004176 4.7e-06 54.3 30 76.7
Peaxi162Scf00071g01115 Petunia axillaris HOM05D003654 ORTHO05D004176 4.7e-06 54.3 76 39.5
AT3G57450 Arabidopsis thaliana HOM05D003654 ORTHO05D004176 6.1e-06 53.9 30 73.3
Migut.N01784 Erythranthe guttata HOM05D003654 ORTHO05D004176 6.1e-06 53.9 30 76.7
Lsat_1_v5_gn_4_31200 Lactuca sativa HOM05D003654 ORTHO05D004176 6.1e-06 53.9 54 48.1
Potri.009G058500 Populus trichocarpa HOM05D003654 ORTHO05D004176 6.1e-06 53.9 39 61.5
Hma1.2p1_0629F.1_g192090 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 8.0e-06 53.5 46 47.8
Prupe.7G061500 Prunus persica HOM05D003654 ORTHO05D004176 8.0e-06 53.5 31 71.0
SalBow6G0563 Salvia bowleyana HOM05D003654 ORTHO05D004176 8.0e-06 53.5 29 79.3


User provided reference genes

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