Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy7G00610 Aquilegia oxysepala HOM05D003969 ORTHO05D003125 5.8e-112 407.5 200 100.0
Aqoxy7G00608 Aquilegia oxysepala HOM05D000007 ORTHO05D000017 1.5e-19 100.5 63 71.4
Aqoxy7G00609 Aquilegia oxysepala HOM05D000007 ORTHO05D000521 1.7e-18 97.1 89 58.4
TAR625G0404 Trochodendron aralioides HOM05D003969 ORTHO05D003125 5.1e-15 85.5 127 44.1
Nn2g12243 Nelumbo nucifera HOM05D003969 ORTHO05D003125 6.6e-15 85.1 129 46.5
TAR636G2249 Trochodendron aralioides HOM05D003969 ORTHO05D003125 6.6e-15 85.1 126 46.0
TAR383G0074 Trochodendron aralioides HOM05D003969 ORTHO05D003125 1.9e-14 83.6 129 43.4
MBI14_g03633_MAGBIO Magnolia biondii HOM05D003969 ORTHO05D003125 2.5e-14 83.2 123 42.3
Nn8g39714 Nelumbo nucifera HOM05D003969 ORTHO05D003125 7.3e-14 81.6 133 44.4
TAR626G0029 Trochodendron aralioides HOM05D003969 ORTHO05D003125 1.6e-13 80.5 131 40.5
Dinv41425 Davidia involucrata HOM05D003969 ORTHO05D003125 1.1e-12 77.8 128 41.4
Lsat_1_v5_gn_8_63081 Lactuca sativa HOM05D003969 ORTHO05D003125 1.1e-12 77.8 144 38.2
Hma1.2p1_0182F.1_g080470 Hydrangea macrophylla HOM05D003969 ORTHO05D003125 5.2e-12 75.5 129 41.1
Hma1.2p1_2744F.1_g327795 Hydrangea macrophylla HOM05D003969 ORTHO05D003125 5.2e-12 75.5 129 41.1
CSS0019227 Camellia sinensis var. sinensis HOM05D003969 ORTHO05D003125 1.5e-11 73.9 124 41.1
CSS0049905 Camellia sinensis var. sinensis HOM05D003969 ORTHO05D003125 1.5e-11 73.9 124 41.1
Hma1.2p1_1784F.1_g302146 Hydrangea macrophylla HOM05D003969 ORTHO05D003125 2.0e-11 73.6 128 43.0
Hma1.2p1_1784F.1_g302150 Hydrangea macrophylla HOM05D003969 ORTHO05D003125 2.0e-11 73.6 128 43.0
EL10Ac8g18819 Beta vulgaris HOM05D003969 ORTHO05D003125 4.4e-11 72.4 138 37.7
MELO3C016989.2 Cucumis melo HOM05D003969 ORTHO05D003125 5.8e-11 72.0 112 42.0
Sc08g0005750 Simmondsia chinensis HOM05D003969 ORTHO05D003125 5.8e-11 72.0 118 39.0
CsaV3_4G036890 Cucumis sativus L. HOM05D003969 ORTHO05D003125 9.9e-11 71.2 115 42.6
AUR62031569 Chenopodium quinoa HOM05D003969 ORTHO05D003125 1.3e-10 70.9 123 38.2
Ah.10g035700 Amaranthus hybridus HOM05D003969 ORTHO05D003125 1.7e-10 70.5 114 41.2
TWI34G1911 Tripterygium wilfordii HOM05D003969 ORTHO05D003125 1.7e-10 70.5 142 38.0
AUR62012444 Chenopodium quinoa HOM05D003969 ORTHO05D003125 2.2e-10 70.1 123 38.2
Ah.16g104800 Amaranthus hybridus HOM05D003969 ORTHO05D003125 2.9e-10 69.7 113 41.6
ClCG05G016610 Citrullus lanatus HOM05D003969 ORTHO05D003125 2.9e-10 69.7 120 43.3
Sc23g0006570 Simmondsia chinensis HOM05D003969 ORTHO05D003125 2.9e-10 69.7 121 37.2
HanXRQChr05g0141561 Helianthus annuus HOM05D003969 ORTHO05D003125 3.8e-10 69.3 133 36.1
EL10Ac2g04157 Beta vulgaris HOM05D003969 ORTHO05D003125 4.9e-10 68.9 114 42.1
AUR62041449 Chenopodium quinoa HOM05D003969 ORTHO05D003125 4.9e-10 68.9 68 50.0
ClCG02G017250 Citrullus lanatus HOM05D003969 ORTHO05D003125 6.4e-10 68.6 95 44.2
Hma1.2p1_0228F.1_g096590 Hydrangea macrophylla HOM05D003969 ORTHO05D003125 6.4e-10 68.6 126 39.7
Sc23g0006560 Simmondsia chinensis HOM05D003969 ORTHO05D003125 6.4e-10 68.6 121 39.7
CSS0007982 Camellia sinensis var. sinensis HOM05D003969 ORTHO05D003125 8.4e-10 68.2 141 38.3
MELO3C004442.2 Cucumis melo HOM05D003969 ORTHO05D003125 1.1e-09 67.8 95 43.2
Sopen12g005450 Solanum pennellii HOM05D003969 ORTHO05D003125 1.9e-09 67.0 117 37.6
Oeu057292.1 Olea europaea HOM05D003969 ORTHO05D003125 2.4e-09 66.6 109 40.4
Psat4g033280 Pisum sativum HOM05D003969 ORTHO05D003125 2.4e-09 66.6 110 41.8
Prupe.7G255000 Prunus persica HOM05D003969 ORTHO05D003125 2.4e-09 66.6 65 50.8
PGSC0003DMG400036991 Solanum tuberosum HOM05D003969 ORTHO05D003125 2.4e-09 66.6 118 39.8
BcaB04g18063 Brassica carinata HOM05D003969 ORTHO05D003125 3.2e-09 66.2 132 37.9
Sed0021780 Sechium edule HOM05D003969 ORTHO05D003125 3.2e-09 66.2 79 49.4
Atru.chr7.2498 Acer truncatum HOM05D003969 ORTHO05D003125 4.1e-09 65.9 122 41.0
Glyma.17G105200 Glycine max HOM05D003969 ORTHO05D003125 4.1e-09 65.9 113 39.8
Lj4g0023658 Lotus japonicus HOM05D003969 ORTHO05D003125 4.1e-09 65.9 128 43.0
Ca_21615_v3 Cicer arietinum L. HOM05D003969 ORTHO05D003125 7.1e-09 65.1 120 41.7
Phvul.003G174600 Phaseolus vulgaris HOM05D003969 ORTHO05D003125 7.1e-09 65.1 112 41.1
Sed0009487 Sechium edule HOM05D003969 ORTHO05D003125 7.1e-09 65.1 113 38.1
Cc08_g00220 Coffea canephora HOM05D003969 ORTHO05D003125 9.2e-09 64.7 135 31.9
Solyc12g010430.1 Solanum lycopersicum HOM05D003969 ORTHO05D003125 9.2e-09 64.7 117 35.9
Gohir.A13G203200 Gossypium hirsutum HOM05D003969 ORTHO05D003125 1.2e-08 64.3 92 40.2
Medtr4g116500 Medicago truncatula HOM05D003969 ORTHO05D003125 1.2e-08 64.3 124 40.3
PGR142G4289 Punica granatum HOM05D003969 ORTHO05D003125 1.2e-08 64.3 75 50.7
HPP92_005341 Vanilla planifolia HOM05D003969 ORTHO05D003125 1.2e-08 64.3 128 37.5
VMungo1215G0564 Vigna mungo HOM05D003969 ORTHO05D003125 1.2e-08 64.3 113 39.8
COL.COLO4_24105 Corchorus olitorius HOM05D003969 ORTHO05D003125 1.6e-08 63.9 54 55.6
Rhsim01G0052800 Rhododendron simsii HOM05D016725 ORTHO05D003125 1.6e-08 63.9 104 36.5
Nitab4.5_0017863g0010 Nicotiana tabacum HOM05D003969 ORTHO05D003125 3.5e-08 62.8 117 36.8
Rhsim01G0050100 Rhododendron simsii HOM05D016725 ORTHO05D003125 3.5e-08 62.8 111 34.2
SalBow1G8303 Salvia bowleyana HOM05D003969 ORTHO05D003125 3.5e-08 62.8 122 35.2
Sp7g07270 Schrenkiella parvula HOM05D003969 ORTHO05D003125 3.5e-08 62.8 144 34.0
AUR62011257 Chenopodium quinoa HOM05D003969 ORTHO05D003125 4.6e-08 62.4 69 46.4
PSO675G3576 Papaver somniferum HOM05D003969 ORTHO05D003125 4.6e-08 62.4 142 34.5
PSO732G0403 Papaver somniferum HOM05D003969 ORTHO05D003125 4.6e-08 62.4 142 34.5
QL02p020337 Quercus lobata HOM05D008824 ORTHO05D003125 4.6e-08 62.4 137 35.0
Rhsim01G0050000 Rhododendron simsii HOM05D016725 ORTHO05D003125 4.6e-08 62.4 65 49.2
SGA_v2.0_scaffold500G52494 Striga asiatica HOM05D003969 ORTHO05D003125 4.6e-08 62.4 119 34.5
TPR.G15776 Trifolium pratense HOM05D003969 ORTHO05D003125 4.6e-08 62.4 125 39.2
CANSAT11G0887 Cannabis sativa HOM05D003969 ORTHO05D003125 6.0e-08 62.0 132 39.4
Glyma.14G112500 Glycine max HOM05D003969 ORTHO05D003125 6.0e-08 62.0 141 34.8
Gohir.D13G208500 Gossypium hirsutum HOM05D003969 ORTHO05D003125 6.0e-08 62.0 91 39.6
Gorai.013G237600 Gossypium raimondii HOM05D003969 ORTHO05D003125 6.0e-08 62.0 91 39.6
Lalb_Chr22g0361461 Lupinus albus HOM05D013068 ORTHO05D003125 6.0e-08 62.0 132 34.8
Dinv15887 Davidia involucrata HOM05D003969 ORTHO05D003125 7.8e-08 61.6 111 39.6
FAN26G0199 Fragaria x ananassa HOM05D003969 ORTHO05D003125 1.3e-07 60.8 91 42.9
PGSC0003DMG400005307 Solanum tuberosum HOM05D003969 ORTHO05D003125 1.3e-07 60.8 130 35.4
Gohir.A05G011500 Gossypium hirsutum HOM05D003969 ORTHO05D003125 1.7e-07 60.5 126 40.5
Os06g0646100 Oryza sativa ssp. japonica HOM05D021431 ORTHO05D003125 1.7e-07 60.5 113 38.1
TWI34G0986 Tripterygium wilfordii HOM05D003969 ORTHO05D003125 1.7e-07 60.5 106 38.7
AL7G43940 Arabidopsis lyrata HOM05D003969 ORTHO05D003125 2.3e-07 60.1 91 41.8
CiPaw.07G226900 Carya illinoinensis HOM05D003969 ORTHO05D003125 2.3e-07 60.1 121 38.8
Sopen07g003200 Solanum pennellii HOM05D003969 ORTHO05D003125 2.3e-07 60.1 125 34.4
VMungo0647G1373 Vigna mungo HOM05D013068 ORTHO05D003125 2.3e-07 60.1 140 32.1
Actinidia21911 Actinidia chinensis HOM05D003969 ORTHO05D003125 3.0e-07 59.7 143 34.3
CAN.G551.21 Capsicum annuum HOM05D003969 ORTHO05D003125 3.0e-07 59.7 118 39.0
Thhalv10005689m.g Eutrema salsugineum HOM05D003969 ORTHO05D003125 3.0e-07 59.7 90 41.1
HPP92_006060 Vanilla planifolia HOM05D003969 ORTHO05D003125 3.0e-07 59.7 64 51.6
BcaC07g37678 Brassica carinata HOM05D003969 ORTHO05D003125 3.9e-07 59.3 82 45.1
BolC8t48050H Brassica oleracea HOM05D003969 ORTHO05D003125 3.9e-07 59.3 82 45.1
Glyma.17G215400 Glycine max HOM05D013068 ORTHO05D003125 3.9e-07 59.3 68 44.1
Manes.03G012100 Manihot esculenta HOM05D003969 ORTHO05D003125 3.9e-07 59.3 126 34.9
Manes.16G125900 Manihot esculenta HOM05D008824 ORTHO05D003125 3.9e-07 59.3 116 37.9
Medtr1g012950 Medicago truncatula HOM05D013068 ORTHO05D003125 3.9e-07 59.3 143 33.6
Solyc07g007150.1 Solanum lycopersicum HOM05D003969 ORTHO05D003125 3.9e-07 59.3 124 34.7
Thecc.09G019700 Theobroma cacao HOM05D003969 ORTHO05D003125 3.9e-07 59.3 113 38.9
Aqoxy7G03536 Aquilegia oxysepala HOM05D003969 ORTHO05D003125 5.1e-07 58.9 117 40.2
AT5G35090 Arabidopsis thaliana HOM05D003969 ORTHO05D003125 5.1e-07 58.9 87 42.5
Carub.0007s3088 Capsella rubella HOM05D003969 ORTHO05D003125 6.6e-07 58.5 50 58.0
Migut.A00008 Erythranthe guttata HOM05D003969 ORTHO05D003125 6.6e-07 58.5 114 37.7
Migut.K00379 Erythranthe guttata HOM05D003969 ORTHO05D003125 6.6e-07 58.5 122 34.4
Gohir.D05G012200 Gossypium hirsutum HOM05D003969 ORTHO05D003125 6.6e-07 58.5 126 36.5
Nitab4.5_0000069g0040 Nicotiana tabacum HOM05D003969 ORTHO05D003125 6.6e-07 58.5 65 46.2
Peaxi162Scf00116g00085 Petunia axillaris HOM05D003969 ORTHO05D003125 6.6e-07 58.5 128 35.9
TPR.G38870 Trifolium pratense HOM05D013068 ORTHO05D003125 6.6e-07 58.5 86 39.5
FAN19G0689 Fragaria x ananassa HOM05D003969 ORTHO05D003125 8.7e-07 58.2 95 40.0
Lj5g0018030 Lotus japonicus HOM05D013068 ORTHO05D003125 8.7e-07 58.2 143 36.4
Peaxi162Scf00391g00017 Petunia axillaris HOM05D003969 ORTHO05D003125 8.7e-07 58.2 125 35.2
Rhsim02G0205800 Rhododendron simsii HOM05D003969 ORTHO05D003125 8.7e-07 58.2 132 37.1
RcHm_v2.0_Chr2g0086701 Rosa chinensis HOM05D003969 ORTHO05D003125 8.7e-07 58.2 63 50.8
Solyc01g011390.2 Solanum lycopersicum HOM05D003969 ORTHO05D003125 8.7e-07 58.2 126 35.7
PGSC0003DMG400029901 Solanum tuberosum HOM05D003969 ORTHO05D003125 8.7e-07 58.2 133 34.6
Atru.chr7.265 Acer truncatum HOM05D003969 ORTHO05D003125 1.1e-06 57.8 77 42.9
A08p09570 Brassica napus HOM05D003969 ORTHO05D003125 1.1e-06 57.8 78 44.9
BraA08t32954Z Brassica rapa HOM05D003969 ORTHO05D003125 1.1e-06 57.8 78 44.9
Manes.14G138428 Manihot esculenta HOM05D003969 ORTHO05D003125 1.1e-06 57.8 52 55.8
SGA_v2.0_scaffold64G21997 Striga asiatica HOM05D003969 ORTHO05D003125 1.1e-06 57.8 127 33.9
CDE02G3523 Ceratophyllum demersum HOM05D000894 ORTHO05D001833 1.5e-06 57.4 119 37.8
Gorai.009G012500 Gossypium raimondii HOM05D003969 ORTHO05D003125 1.5e-06 57.4 89 42.7
THA.LOC104808923 Tarenaya hassleriana HOM05D003969 ORTHO05D003125 1.5e-06 57.4 93 39.8
HPP92_020075 Vanilla planifolia HOM05D003969 ORTHO05D003125 1.5e-06 57.4 97 37.1
Glyma.13G157500 Glycine max HOM05D003969 ORTHO05D003125 1.9e-06 57.0 113 38.9
Lalb_Chr12g0198511 Lupinus albus HOM05D003969 ORTHO05D003125 1.9e-06 57.0 114 37.7
Dinv11721 Davidia involucrata HOM05D003969 ORTHO05D003125 2.5e-06 56.6 69 44.9
FAN23G1308 Fragaria x ananassa HOM05D003969 ORTHO05D003125 2.5e-06 56.6 95 38.9
Rhsim01G0052600 Rhododendron simsii HOM05D016725 ORTHO05D003125 2.5e-06 56.6 84 38.1
PGSC0003DMG400030696 Solanum tuberosum HOM05D003969 ORTHO05D003125 2.5e-06 56.6 131 32.1
Zm00001eb275140 Zea mays HOM05D021431 ORTHO05D003125 2.5e-06 56.6 112 35.7
Cfa013102 Carpinus fangiana HOM05D003969 ORTHO05D003125 3.3e-06 56.2 118 37.3
Sed0014973 Sechium edule HOM05D003969 ORTHO05D003125 3.3e-06 56.2 107 35.5
Cc06_g07430 Coffea canephora HOM05D003969 ORTHO05D003125 4.3e-06 55.8 64 42.2
ECA236G4020 Erigeron canadensis HOM05D003969 ORTHO05D003125 4.3e-06 55.8 146 32.2
Nitab4.5_0002992g0060 Nicotiana tabacum HOM05D003969 ORTHO05D003125 4.3e-06 55.8 114 36.8
Phvul.001G047400 Phaseolus vulgaris HOM05D013068 ORTHO05D003125 4.3e-06 55.8 140 32.1
Thecc.09G141500 Theobroma cacao HOM05D003969 ORTHO05D003125 4.3e-06 55.8 49 55.1
Ciclev10009935m.g Citrus clementina HOM05D003969 ORTHO05D003125 5.6e-06 55.5 109 36.7
Duzib150G0809 Durio zibethinus HOM05D003969 ORTHO05D003125 5.6e-06 55.5 49 55.1
Rhsim03G0254600 Rhododendron simsii HOM05D000320 ORTHO05D000532 5.6e-06 55.5 119 38.7
Sopen01g007400 Solanum pennellii HOM05D003969 ORTHO05D003125 5.6e-06 55.5 129 32.6
Actinidia23308 Actinidia chinensis HOM05D003969 ORTHO05D003125 7.3e-06 55.1 65 46.2
MSTRG.10635 Avicennia marina HOM05D003969 ORTHO05D003125 7.3e-06 55.1 125 30.4
FAN28G0460 Fragaria x ananassa HOM05D003969 ORTHO05D003125 7.3e-06 55.1 95 38.9
Potri.006G259200 Populus trichocarpa HOM05D008824 ORTHO05D003125 7.3e-06 55.1 133 30.8
Cpa.g.sc46.86 Carica papaya HOM05D003969 ORTHO05D003125 9.6e-06 54.7 73 42.5
CiPaw.15G182500 Carya illinoinensis HOM05D003969 ORTHO05D003125 9.6e-06 54.7 95 34.7
Duzib168G2018 Durio zibethinus HOM05D003969 ORTHO05D003125 9.6e-06 54.7 49 55.1
Lalb_Chr24g0402081 Lupinus albus HOM05D013068 ORTHO05D003125 9.6e-06 54.7 135 35.6


User provided reference genes

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