Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy7G00605 Aquilegia oxysepala HOM05D004961 ORTHO05D006258 0.0e+00 1236.5 701 100.0
Nn4g26417 Nelumbo nucifera HOM05D004961 ORTHO05D006258 3.4e-276 954.9 562 81.3
TAR629G2710 Trochodendron aralioides HOM05D004961 ORTHO05D006258 2.7e-273 945.3 566 80.7
TAR375G0417 Trochodendron aralioides HOM05D004961 ORTHO05D006258 1.2e-265 919.8 553 79.2
Thecc.01G375500 Theobroma cacao HOM05D004961 ORTHO05D006258 6.5e-259 897.5 549 76.5
Haze_16810 Corylus avellana HOM05D004961 ORTHO05D006258 5.5e-258 894.4 558 76.7
Cfa001712 Carpinus fangiana HOM05D004961 ORTHO05D006258 9.4e-258 893.6 558 76.9
CSS0024555 Camellia sinensis var. sinensis HOM05D004961 ORTHO05D006258 2.3e-256 889.0 557 75.6
COL.COLO4_12554 Corchorus olitorius HOM05D004961 ORTHO05D006258 5.1e-256 887.9 549 76.0
QL08p052244 Quercus lobata HOM05D004961 ORTHO05D006258 3.3e-255 885.2 550 76.7
CANSAT56G2246 Cannabis sativa HOM05D004961 ORTHO05D006258 5.7e-255 884.4 557 75.0
Duzib133G1444 Durio zibethinus HOM05D004961 ORTHO05D006258 1.3e-254 883.2 549 74.9
CiPaw.02G167000 Carya illinoinensis HOM05D004961 ORTHO05D006258 3.7e-254 881.7 566 75.1
PSO478G4809 Papaver somniferum HOM05D004961 ORTHO05D006258 1.1e-253 880.2 563 74.6
Gohir.A11G081100 Gossypium hirsutum HOM05D004961 ORTHO05D006258 1.4e-253 879.8 549 75.2
RcHm_v2.0_Chr1g0350691 Rosa chinensis HOM05D004961 ORTHO05D006258 1.5e-252 876.3 552 74.5
Ciclev10019247m.g Citrus clementina HOM05D004961 ORTHO05D006258 1.7e-251 872.8 556 75.0
Gorai.007G091500 Gossypium raimondii HOM05D004961 ORTHO05D006258 8.5e-251 870.5 549 74.7
Gohir.D11G085600 Gossypium hirsutum HOM05D004961 ORTHO05D006258 1.9e-250 869.4 549 74.5
FvH4_7g11970 Fragaria vesca HOM05D004961 ORTHO05D006258 5.5e-250 867.8 550 73.5
FAN01G0106 Fragaria x ananassa HOM05D004961 ORTHO05D006258 5.5e-250 867.8 559 72.1
FAN06G1099 Fragaria x ananassa HOM05D004961 ORTHO05D006258 5.5e-250 867.8 550 73.5
FAN10G1405 Fragaria x ananassa HOM05D004961 ORTHO05D006258 5.5e-250 867.8 550 73.5
Prupe.2G146400 Prunus persica HOM05D004961 ORTHO05D006258 1.2e-249 866.7 557 74.0
FAN06G1287 Fragaria x ananassa HOM05D004961 ORTHO05D006258 2.7e-249 865.5 550 73.3
FAN10G1351 Fragaria x ananassa HOM05D004961 ORTHO05D006258 3.6e-249 865.1 550 73.5
FAN03G2819 Fragaria x ananassa HOM05D004961 ORTHO05D006258 8.0e-249 864.0 550 73.3
Manes.05G044700 Manihot esculenta HOM05D004961 ORTHO05D006258 1.0e-248 863.6 557 73.2
PSO782G4206 Papaver somniferum HOM05D004961 ORTHO05D006258 2.3e-248 862.4 563 73.7
Sabra14G0049800 Salix brachista HOM05D004961 ORTHO05D006258 2.3e-248 862.4 548 74.5
MD07G1123000 Malus domestica HOM05D004961 ORTHO05D006258 3.0e-248 862.1 557 73.8
vmacro13395 Vaccinium macrocarpon HOM05D004961 ORTHO05D006258 3.0e-248 862.1 549 74.0
Potri.014G070200 Populus trichocarpa HOM05D004961 ORTHO05D006258 5.2e-248 861.3 548 74.1
PGR031G0429 Punica granatum HOM05D004961 ORTHO05D006258 6.7e-248 860.9 555 74.8
CiPaw.01G261500 Carya illinoinensis HOM05D004961 ORTHO05D006258 8.8e-248 860.5 568 72.7
MD02G1203100 Malus domestica HOM05D004961 ORTHO05D006258 2.0e-247 859.4 550 74.2
Gohir.D08G042400 Gossypium hirsutum HOM05D004961 ORTHO05D006258 2.6e-247 859.0 548 73.5
MBI12_g27776_MAGBIO Magnolia biondii HOM05D004961 ORTHO05D006258 3.3e-247 858.6 572 73.6
Gorai.004G041000 Gossypium raimondii HOM05D004961 ORTHO05D006258 7.4e-247 857.4 548 73.4
Gohir.A08G031300 Gossypium hirsutum HOM05D004961 ORTHO05D006258 4.8e-246 854.7 547 73.5
Nn4g26286 Nelumbo nucifera HOM05D004961 ORTHO05D006258 4.8e-246 854.7 495 83.0
Rhsim07G0027200 Rhododendron simsii HOM05D004961 ORTHO05D006258 6.3e-246 854.4 548 73.0
Atru.chr5.317 Acer truncatum HOM05D004961 ORTHO05D006258 1.8e-245 852.8 555 74.2
Ca_23848_v3 Cicer arietinum L. HOM05D004961 ORTHO05D006258 4.1e-245 851.7 560 72.7
TWI14G0737 Tripterygium wilfordii HOM05D004961 ORTHO05D006258 4.1e-245 851.7 549 73.4
TWI59G0003 Tripterygium wilfordii HOM05D004961 ORTHO05D006258 9.1e-245 850.5 550 73.1
Lalb_Chr13g0291711 Lupinus albus HOM05D004961 ORTHO05D006258 3.8e-243 845.1 564 71.6
Hma1.2p1_0033F.1_g021010 Hydrangea macrophylla HOM05D004961 ORTHO05D006258 8.5e-243 844.0 549 73.4
Hma1.2p1_2294F.1_g319110 Hydrangea macrophylla HOM05D004961 ORTHO05D006258 1.5e-242 843.2 549 73.4
Dinv43717 Davidia involucrata HOM05D004961 ORTHO05D006258 2.5e-242 842.4 533 76.2
Lj9P570T30 Lonicera japonica HOM05D004961 ORTHO05D006258 1.2e-241 840.1 528 76.1
TPR.G21740 Trifolium pratense HOM05D004961 ORTHO05D006258 4.0e-240 835.1 561 71.5
Aa31LG10G15080 Aethionema arabicum HOM05D004961 ORTHO05D006258 4.4e-239 831.6 554 72.4
CsaV3_3G009640 Cucumis sativus L. HOM05D004961 ORTHO05D006258 3.7e-238 828.6 562 69.6
MELO3C006184.2 Cucumis melo HOM05D004961 ORTHO05D006258 6.3e-238 827.8 562 69.4
Sp5g02400 Schrenkiella parvula HOM05D004961 ORTHO05D006258 1.4e-237 826.6 553 71.1
Thhalv10005830m.g Eutrema salsugineum HOM05D004961 ORTHO05D006258 3.1e-237 825.5 554 71.1
arahy.Tifrunner.gnm1.ann1.0VBM10 Arachis hypogaea HOM05D004961 ORTHO05D006258 7.0e-237 824.3 560 71.2
Lj3g0023798 Lotus japonicus HOM05D004961 ORTHO05D006258 7.0e-237 824.3 557 71.3
CSS0035955 Camellia sinensis var. sinensis HOM05D004961 ORTHO05D006258 9.1e-237 823.9 571 70.9
arahy.Tifrunner.gnm1.ann1.T4E2VP Arachis hypogaea HOM05D004961 ORTHO05D006258 1.2e-236 823.5 557 71.6
SalBow5G3969 Salvia bowleyana HOM05D004961 ORTHO05D006258 1.7e-235 819.7 562 70.5
SalBow5G5559 Salvia bowleyana HOM05D004961 ORTHO05D006258 1.7e-235 819.7 562 70.5
Cc02_g36640 Coffea canephora HOM05D004961 ORTHO05D006258 2.2e-235 819.3 555 71.0
Medtr8g036115 Medicago truncatula HOM05D004961 ORTHO05D006258 5.0e-235 818.1 560 70.9
Sed0003746 Sechium edule HOM05D004961 ORTHO05D006258 1.9e-234 816.2 562 68.7
THA.LOC104802441 Tarenaya hassleriana HOM05D004961 ORTHO05D006258 1.2e-233 813.5 550 71.5
CARHR171240 Cardamine hirsuta HOM05D004961 ORTHO05D006258 2.3e-232 809.3 554 70.8
ATR0810G227 Amborella trichopoda HOM05D004961 ORTHO05D006258 1.2e-231 807.0 558 68.1
Nitab4.5_0000457g0390 Nicotiana tabacum HOM05D004961 ORTHO05D006258 9.8e-231 803.9 551 71.5
Actinidia12261 Actinidia chinensis HOM05D004961 ORTHO05D006258 4.8e-230 801.6 534 72.8
Phvul.010G084800 Phaseolus vulgaris HOM05D004961 ORTHO05D006258 8.3e-230 800.8 568 70.1
Nitab4.5_0005372g0040 Nicotiana tabacum HOM05D004961 ORTHO05D006258 5.4e-229 798.1 551 71.1
Psat4g195520 Pisum sativum HOM05D004961 ORTHO05D006258 1.6e-228 796.6 538 71.7
VMungo0331G0268 Vigna mungo HOM05D004961 ORTHO05D006258 1.3e-227 793.5 561 70.4
AL5G43170 Arabidopsis lyrata HOM05D004961 ORTHO05D006258 3.8e-227 792.0 557 69.7
AUR62004223 Chenopodium quinoa HOM05D004961 ORTHO05D006258 1.8e-224 783.1 558 69.5
Lalb_Chr07g0189751 Lupinus albus HOM05D004961 ORTHO05D006258 1.8e-224 783.1 555 69.4
Glyma.01G143700 Glycine max HOM05D004961 ORTHO05D006258 1.2e-223 780.4 577 68.3
CAN.G388.8 Capsicum annuum HOM05D004961 ORTHO05D006258 1.5e-223 780.0 548 69.9
Sopen01g037160 Solanum pennellii HOM05D004961 ORTHO05D006258 2.6e-223 779.2 548 69.7
Solyc01g091390.2 Solanum lycopersicum HOM05D004961 ORTHO05D006258 3.4e-223 778.9 548 69.9
EL10Ac1g00903 Beta vulgaris HOM05D004961 ORTHO05D006258 7.5e-223 777.7 548 69.3
PGSC0003DMG400012758 Solanum tuberosum HOM05D004961 ORTHO05D006258 3.7e-222 775.4 548 69.5
BraA09t40736Z Brassica rapa HOM05D004961 ORTHO05D006258 6.3e-222 774.6 555 68.3
BcaC07g40605 Brassica carinata HOM05D004961 ORTHO05D006258 1.1e-221 773.9 558 68.1
C08p35800 Brassica napus HOM05D004961 ORTHO05D006258 1.1e-221 773.9 558 68.1
BolC8t51170H Brassica oleracea HOM05D004961 ORTHO05D006258 1.1e-221 773.9 558 68.1
A09p53100 Brassica napus HOM05D004961 ORTHO05D006258 1.4e-221 773.5 555 68.1
AT3G60850 Arabidopsis thaliana HOM05D004961 ORTHO05D006258 1.8e-221 773.1 559 68.7
Carub.0005s2761 Capsella rubella HOM05D004961 ORTHO05D006258 2.4e-221 772.7 579 65.3
Sc26g0001210 Simmondsia chinensis HOM05D004961 ORTHO05D006258 7.0e-221 771.2 546 67.6
Migut.B01640 Erythranthe guttata HOM05D004961 ORTHO05D006258 2.7e-220 769.2 573 65.8
Glyma.03G023401 Glycine max HOM05D004961 ORTHO05D006258 7.8e-220 767.7 578 66.8
BcaC07g42645 Brassica carinata HOM05D004961 ORTHO05D006258 1.3e-219 766.9 560 67.1
DCAR_025114 Daucus carota HOM05D004961 ORTHO05D006258 1.3e-219 766.9 565 66.4
Sed0025415 Sechium edule HOM05D004961 ORTHO05D006258 5.0e-219 765.0 520 70.2
ECA236G4958 Erigeron canadensis HOM05D004961 ORTHO05D006258 9.5e-218 760.8 555 67.2
Ah.05g174990 Amaranthus hybridus HOM05D004961 ORTHO05D006258 1.2e-217 760.4 551 67.7
SGA_v2.0_scaffold11G05589 Striga asiatica HOM05D004961 ORTHO05D006258 2.2e-214 749.6 563 65.7
Migut.N01639 Erythranthe guttata HOM05D004961 ORTHO05D006258 3.7e-214 748.8 569 65.2
SHI25769 Sapria himalayana HOM05D004961 ORTHO05D006258 4.1e-213 745.3 551 65.3
CDE02G2832 Ceratophyllum demersum HOM05D004961 ORTHO05D006258 1.2e-212 743.8 563 65.7
Peaxi162Scf00021g01613 Petunia axillaris HOM05D004961 ORTHO05D006258 3.1e-208 729.2 497 72.2
AUR62013625 Chenopodium quinoa HOM05D004961 ORTHO05D006258 6.8e-208 728.0 531 68.4
HanXRQChr09g0245711 Helianthus annuus HOM05D004961 ORTHO05D006258 4.4e-207 725.3 561 65.8
BcaC08g45088 Brassica carinata HOM05D004961 ORTHO05D006258 1.9e-205 719.9 565 64.4
C06p26950 Brassica napus HOM05D004961 ORTHO05D006258 1.9e-205 719.9 565 64.4
BolC6t37869H Brassica oleracea HOM05D004961 ORTHO05D006258 1.9e-205 719.9 565 64.4
ECA234G3702 Erigeron canadensis HOM05D004961 ORTHO05D006258 5.4e-205 718.4 566 64.1
SEGI_19190 Sequoiadendron giganteum HOM05D004961 ORTHO05D006258 4.3e-202 708.8 576 62.8
HPP92_025672 Vanilla planifolia HOM05D004961 ORTHO05D006258 3.6e-201 705.7 584 62.7
HanXRQChr06g0169541 Helianthus annuus HOM05D004961 ORTHO05D006258 2.0e-199 699.9 527 66.6
A07p25240 Brassica napus HOM05D004961 ORTHO05D006258 4.4e-199 698.7 565 63.5
HanXRQChr03g0093851 Helianthus annuus HOM05D004961 ORTHO05D006258 2.9e-198 696.0 553 63.7
Lsat_1_v5_gn_7_7241 Lactuca sativa HOM05D004961 ORTHO05D006258 4.9e-198 695.3 542 68.3
Oeu005782.1 Olea europaea HOM05D004961 ORTHO05D006258 3.2e-197 692.6 552 63.2
BraA07t30166Z Brassica rapa HOM05D004961 ORTHO05D006258 1.3e-195 687.2 571 61.6
Oeu037913.2 Olea europaea HOM05D004961 ORTHO05D006258 4.6e-188 662.1 554 61.6
Os03g0247100 Oryza sativa ssp. japonica HOM05D004961 ORTHO05D006258 1.5e-178 630.6 587 57.8
HanXRQChr16g0519241 Helianthus annuus HOM05D004961 ORTHO05D006258 5.3e-176 622.1 550 59.8
CDE11G0257 Ceratophyllum demersum HOM05D004961 ORTHO05D006258 5.8e-175 618.6 457 67.6
Oeu003482.1 Olea europaea HOM05D004961 ORTHO05D006258 1.1e-168 597.8 558 55.6
GSVIVG01027619001 Vitis vinifera HOM05D004961 ORTHO05D006258 3.0e-163 579.7 404 71.0
unitig_8.g3388 Utricularia gibba HOM05D004961 ORTHO05D006258 8.7e-163 578.2 430 66.0
ATR0582G166 Amborella trichopoda HOM05D004961 ORTHO05D006258 9.0e-160 568.2 549 53.2
Zm00001eb398630 Zea mays HOM05D004961 ORTHO05D006258 1.7e-158 563.9 548 56.6
unitig_22.g6802 Utricularia gibba HOM05D004961 ORTHO05D006258 6.9e-144 515.4 324 76.9
Eucgr.D02450 Eucalyptus grandis HOM05D004961 ORTHO05D006258 1.1e-138 498.0 338 68.9
Nn1g01213 Nelumbo nucifera HOM05D004961 ORTHO05D006258 5.7e-130 469.2 286 79.0
SMO164G0066 Selaginella moellendorffii HOM05D004961 ORTHO05D006258 5.3e-128 462.6 383 57.4
SMO358G0144 Selaginella moellendorffii HOM05D004961 ORTHO05D006258 6.5e-126 455.7 384 57.6
BcaB02g07397 Brassica carinata HOM05D004961 ORTHO05D006258 8.9e-91 339.0 350 52.3
SGA_v2.0_scaffold43G16471 Striga asiatica HOM05D004961 ORTHO05D006258 5.6e-77 293.1 556 34.9
BcaC07g40606 Brassica carinata HOM05D003135 ORTHO05D003715 3.5e-71 273.9 439 40.8
Cpa.g.sc18.116 Carica papaya HOM05D004961 ORTHO05D006258 4.6e-71 273.5 548 33.2
unitig_22.g6801 Utricularia gibba HOM05D004961 ORTHO05D006258 4.5e-50 203.8 219 47.9
BcaC07g40608 Brassica carinata HOM05D003135 ORTHO05D006258 2.1e-44 184.9 165 55.2
Zm00001eb010600 Zea mays HOM05D004961 ORTHO05D006258 6.5e-41 173.3 144 59.0
SMO115G0102 Selaginella moellendorffii HOM05D004961 ORTHO05D037335 1.5e-34 152.1 291 31.6
BcaNung07137 Brassica carinata HOM05D004961 ORTHO05D006258 5.3e-27 127.1 76 76.3
HanXRQChr16g0519231 Helianthus annuus HOM05D004961 ORTHO05D006258 5.5e-24 117.1 101 60.4
BcaNung07139 Brassica carinata HOM05D004961 ORTHO05D006258 6.1e-23 113.6 100 59.0
BcaNung07135 Brassica carinata HOM05D004961 ORTHO05D006258 2.0e-18 98.6 97 56.7
MELO3C015747.2 Cucumis melo HOM05D004961 ORTHO05D044953 8.5e-17 93.2 72 59.7
SMO334G0060 Selaginella moellendorffii HOM05D004961 ORTHO05D377666 4.0e-14 84.3 153 31.4
BcaC07g40607 Brassica carinata HOM05D003135 ORTHO05D023343 1.9e-08 65.5 38 68.4
HanXRQChr12g0366651 Helianthus annuus HOM05D001845 ORTHO05D001878 3.2e-08 64.7 58 58.6
unitig_8.g3389 Utricularia gibba HOM05D004961 ORTHO05D006258 3.2e-08 64.7 46 60.9


User provided reference genes

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