Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy7G00515 Aquilegia oxysepala HOM05D005963 ORTHO05D006869 0.0e+00 1843.9 926 100.0
Nn6g34339 Nelumbo nucifera HOM05D005963 ORTHO05D006869 0.0e+00 1248.4 999 67.7
GSVIVG01018456001 Vitis vinifera HOM05D005963 ORTHO05D006869 0.0e+00 1238.4 920 69.8
QL12p038851 Quercus lobata HOM05D005963 ORTHO05D006869 0.0e+00 1211.1 944 67.9
CSS0028871 Camellia sinensis var. sinensis HOM05D005963 ORTHO05D006869 0.0e+00 1210.7 919 69.9
Duzib205G1443 Durio zibethinus HOM05D005963 ORTHO05D006869 0.0e+00 1201.4 939 67.0
Ciclev10004233m.g Citrus clementina HOM05D005963 ORTHO05D006869 0.0e+00 1192.9 951 67.0
TAR374G1343 Trochodendron aralioides HOM05D005963 ORTHO05D006869 0.0e+00 1191.0 906 69.8
Hma1.2p1_0488F.1_g163860 Hydrangea macrophylla HOM05D005963 ORTHO05D006869 0.0e+00 1187.2 911 68.3
Thecc.03G166100 Theobroma cacao HOM05D005963 ORTHO05D006869 0.0e+00 1183.7 931 66.5
Peaxi162Scf00192g00613 Petunia axillaris HOM05D005963 ORTHO05D006869 0.0e+00 1182.5 917 66.3
CAN.G1257.1 Capsicum annuum HOM05D005963 ORTHO05D006869 0.0e+00 1175.2 1002 62.8
Haze_13797 Corylus avellana HOM05D005963 ORTHO05D006869 0.0e+00 1167.1 919 66.8
Potri.012G132300 Populus trichocarpa HOM05D005963 ORTHO05D006869 0.0e+00 1166.4 943 64.6
Actinidia25056 Actinidia chinensis HOM05D005963 ORTHO05D006869 0.0e+00 1165.6 919 67.1
Oeu030146.1 Olea europaea HOM05D005963 ORTHO05D006869 0.0e+00 1163.3 943 65.4
Oeu030148.1 Olea europaea HOM05D005963 ORTHO05D006869 0.0e+00 1162.9 943 65.4
CiPaw.03G099400 Carya illinoinensis HOM05D005963 ORTHO05D006869 0.0e+00 1160.2 932 65.9
Nitab4.5_0000124g0020 Nicotiana tabacum HOM05D005963 ORTHO05D006869 0.0e+00 1155.6 953 63.2
Cpa.g.sc4.183 Carica papaya HOM05D005963 ORTHO05D006869 0.0e+00 1154.8 941 64.5
Prupe.2G286400 Prunus persica HOM05D005963 ORTHO05D006869 0.0e+00 1154.0 948 64.2
Actinidia13537 Actinidia chinensis HOM05D005963 ORTHO05D006869 0.0e+00 1151.3 914 65.9
Duzib068G1175 Durio zibethinus HOM05D005963 ORTHO05D006869 0.0e+00 1151.0 954 64.2
Nitab4.5_0000371g0030 Nicotiana tabacum HOM05D005963 ORTHO05D006869 0.0e+00 1147.1 933 64.7
Rhsim03G0174100 Rhododendron simsii HOM05D005963 ORTHO05D006869 0.0e+00 1144.0 921 63.3
PGR142G0011 Punica granatum HOM05D005963 ORTHO05D006869 0.0e+00 1143.6 927 64.4
Manes.06G140900 Manihot esculenta HOM05D005963 ORTHO05D006869 0.0e+00 1139.0 923 65.9
Solyc03g006900.2 Solanum lycopersicum HOM05D005963 ORTHO05D006869 0.0e+00 1131.3 932 64.4
Sopen03g002900 Solanum pennellii HOM05D005963 ORTHO05D006869 0.0e+00 1129.8 929 63.5
CiPaw.04G064800 Carya illinoinensis HOM05D005963 ORTHO05D006869 0.0e+00 1124.4 927 65.8
MD01G1192000 Malus domestica HOM05D005963 ORTHO05D006869 0.0e+00 1122.8 964 63.4
TWI14G0479 Tripterygium wilfordii HOM05D005963 ORTHO05D006869 0.0e+00 1110.5 931 63.3
Eucgr.K00183 Eucalyptus grandis HOM05D005963 ORTHO05D006869 0.0e+00 1102.0 954 61.9
ECA232G0907 Erigeron canadensis HOM05D005963 ORTHO05D006869 0.0e+00 1098.2 946 61.6
Lsat_1_v5_gn_9_53261 Lactuca sativa HOM05D005963 ORTHO05D006869 0.0e+00 1097.4 941 62.7
MD00G1003400 Malus domestica HOM05D005963 ORTHO05D006869 0.0e+00 1096.6 961 62.1
Sabra12G0099600 Salix brachista HOM05D005963 ORTHO05D006869 0.0e+00 1089.7 931 64.1
PSO782G2761 Papaver somniferum HOM05D005963 ORTHO05D006869 0.0e+00 1082.8 966 62.7
HanXRQChr15g0486261 Helianthus annuus HOM05D005963 ORTHO05D006869 0.0e+00 1079.7 1016 58.7
SHI13839 Sapria himalayana HOM05D005963 ORTHO05D006869 0.0e+00 1076.6 940 60.5
PSO478G0110 Papaver somniferum HOM05D005963 ORTHO05D006869 7.6e-311 1070.5 942 62.8
RcHm_v2.0_Chr1g0376121 Rosa chinensis HOM05D005963 ORTHO05D006869 2.2e-310 1068.9 953 61.1
DCAR_018136 Daucus carota HOM05D005963 ORTHO05D006869 6.3e-310 1067.4 919 59.2
HanXRQChr14g0433491 Helianthus annuus HOM05D005963 ORTHO05D006869 3.4e-308 1061.6 930 61.0
VMungo0464G1720 Vigna mungo HOM05D005963 ORTHO05D006869 8.8e-304 1047.0 924 61.8
FAN06G4856 Fragaria x ananassa HOM05D005963 ORTHO05D006869 3.3e-303 1045.0 939 58.8
FvH4_7g28640 Fragaria vesca HOM05D005963 ORTHO05D006869 1.3e-302 1043.1 939 58.6
FAN06G2356 Fragaria x ananassa HOM05D005963 ORTHO05D006869 1.7e-302 1042.7 939 58.8
FAN03G0518 Fragaria x ananassa HOM05D005963 ORTHO05D006869 6.3e-302 1040.8 936 58.7
Dinv28513 Davidia involucrata HOM05D005963 ORTHO05D006869 1.1e-301 1040.0 819 65.3
Gohir.A12G262600 Gossypium hirsutum HOM05D005963 ORTHO05D006869 2.4e-301 1038.9 826 64.4
Dinv35132 Davidia involucrata HOM05D005963 ORTHO05D006869 4.1e-301 1038.1 904 62.3
Gorai.008G282200 Gossypium raimondii HOM05D005963 ORTHO05D006869 1.0e-299 1033.5 925 59.5
Gohir.D12G263300 Gossypium hirsutum HOM05D005963 ORTHO05D006869 6.5e-299 1030.8 925 59.4
FAN01G2646 Fragaria x ananassa HOM05D005963 ORTHO05D006869 1.9e-298 1029.2 939 57.9
Phvul.004G124000 Phaseolus vulgaris HOM05D005963 ORTHO05D006869 1.2e-297 1026.5 929 60.9
COL.COLO4_14220 Corchorus olitorius HOM05D005963 ORTHO05D006869 1.2e-292 1010.0 820 62.9
Lj8C34G2 Lonicera japonica HOM05D005963 ORTHO05D006869 1.7e-291 1006.1 937 58.9
Glyma.09G149700 Glycine max HOM05D005963 ORTHO05D006869 6.5e-291 1004.2 919 60.7
vmacro22547 Vaccinium macrocarpon HOM05D005963 ORTHO05D006869 4.4e-287 991.5 823 61.4
Medtr0007s0220 Medicago truncatula HOM05D005963 ORTHO05D006869 1.3e-286 989.9 932 57.5
arahy.Tifrunner.gnm1.ann1.R4K09I Arachis hypogaea HOM05D005963 ORTHO05D006869 1.2e-284 983.4 947 56.5
FAN10G3242 Fragaria x ananassa HOM05D005963 ORTHO05D006869 1.2e-284 983.4 939 56.8
arahy.Tifrunner.gnm1.ann1.G2RQNR Arachis hypogaea HOM05D005963 ORTHO05D006869 8.5e-283 977.2 975 56.0
Lj2g0022710 Lotus japonicus HOM05D005963 ORTHO05D006869 1.8e-280 969.5 946 57.6
Gorai.001G047400 Gossypium raimondii HOM05D005963 ORTHO05D006869 3.3e-279 965.3 930 56.8
MELO3C006856.2 Cucumis melo HOM05D005963 ORTHO05D006869 7.0e-277 957.6 920 55.1
Sed0018627 Sechium edule HOM05D005963 ORTHO05D006869 4.5e-276 954.9 908 57.3
Psat1g106960 Pisum sativum HOM05D005963 ORTHO05D006869 5.0e-275 951.4 930 57.0
TPR.G26590 Trifolium pratense HOM05D005963 ORTHO05D006869 7.2e-274 947.6 932 56.2
THA.LOC104825083 Tarenaya hassleriana HOM05D005963 ORTHO05D006869 1.6e-273 946.4 872 57.3
Lalb_Chr19g0131211 Lupinus albus HOM05D005963 ORTHO05D006869 6.1e-273 944.5 1010 53.9
ClCG05G007670 Citrullus lanatus HOM05D005963 ORTHO05D006869 3.7e-270 935.3 828 58.2
Gohir.A07G040200 Gossypium hirsutum HOM05D005963 ORTHO05D006869 8.0e-265 917.5 682 67.4
CsaV3_3G016590 Cucumis sativus L. HOM05D005963 ORTHO05D006869 6.8e-264 914.4 925 53.7
Thhalv10015853m.g Eutrema salsugineum HOM05D005963 ORTHO05D006869 1.1e-261 907.1 1000 51.5
Carub.0008s1182 Capsella rubella HOM05D005963 ORTHO05D006869 1.8e-261 906.4 937 53.9
AT5G51800 Arabidopsis thaliana HOM05D005963 ORTHO05D006869 7.0e-261 904.4 876 55.6
AL8G26090 Arabidopsis lyrata HOM05D005963 ORTHO05D006869 2.7e-260 902.5 941 52.8
EL10Ac3g05753 Beta vulgaris HOM05D005963 ORTHO05D006869 2.7e-260 902.5 844 57.2
CARHR264680 Cardamine hirsuta HOM05D005963 ORTHO05D006869 6.6e-259 897.9 941 53.2
A10p09630 Brassica napus HOM05D005963 ORTHO05D006869 2.8e-257 892.5 994 52.0
BraA10t43044Z Brassica rapa HOM05D005963 ORTHO05D006869 2.8e-257 892.5 994 52.0
BolC9t56999H Brassica oleracea HOM05D005963 ORTHO05D006869 6.1e-257 891.3 1000 51.8
Sp6g14050 Schrenkiella parvula HOM05D005963 ORTHO05D006869 3.7e-254 882.1 939 53.1
SEGI_31852 Sequoiadendron giganteum HOM05D005963 ORTHO05D006869 7.3e-250 867.8 811 55.6
EL10Ac7g16401 Beta vulgaris HOM05D005963 ORTHO05D006869 8.0e-249 864.4 921 53.1
A02p12120 Brassica napus HOM05D005963 ORTHO05D006869 8.0e-249 864.4 991 51.2
BraA02t06276Z Brassica rapa HOM05D005963 ORTHO05D006869 8.0e-249 864.4 991 51.2
Ah.13g067680 Amaranthus hybridus HOM05D005963 ORTHO05D006869 1.3e-246 857.1 888 53.6
AUR62016071 Chenopodium quinoa HOM05D005963 ORTHO05D006869 3.7e-246 855.5 924 53.9
BcaB08g35527 Brassica carinata HOM05D005963 ORTHO05D006869 4.9e-246 855.1 995 50.4
FAN03G0902 Fragaria x ananassa HOM05D005963 ORTHO05D006869 1.9e-245 853.2 759 57.8
BcaC04g20635 Brassica carinata HOM05D005963 ORTHO05D006869 9.2e-245 850.9 1000 50.4
BolC2t08150H Brassica oleracea HOM05D005963 ORTHO05D006869 2.5e-242 842.8 989 50.2
C02p20220 Brassica napus HOM05D005963 ORTHO05D006869 1.4e-240 837.0 989 49.8
Cc02_g03640 Coffea canephora HOM05D005963 ORTHO05D006869 6.0e-236 821.6 538 72.7
AUR62021279 Chenopodium quinoa HOM05D005963 ORTHO05D006869 2.6e-231 806.2 762 57.9
PGSC0003DMG400007557 Solanum tuberosum HOM05D005963 ORTHO05D006869 4.2e-229 798.9 536 70.7
BcaC03g14575 Brassica carinata HOM05D005963 ORTHO05D006869 5.1e-227 792.0 989 48.1
Gohir.D07G044301 Gossypium hirsutum HOM05D005963 ORTHO05D006869 2.6e-223 779.6 527 71.3
CDE08G0260 Ceratophyllum demersum HOM05D005963 ORTHO05D006869 3.2e-221 772.7 692 56.5
Sc25g0000220 Simmondsia chinensis HOM05D005963 ORTHO05D006869 2.9e-214 749.6 983 45.9
Hund04676 Selenicereus undatus HOM05D005963 ORTHO05D006869 1.9e-197 693.7 613 57.6
Atru.chr1.580 Acer truncatum HOM05D005963 ORTHO05D006869 2.0e-154 550.8 395 67.3
C09p41240 Brassica napus HOM05D005963 ORTHO05D006869 2.8e-153 547.0 695 49.2
ATR0661G117 Amborella trichopoda HOM05D005963 ORTHO05D006869 3.3e-149 533.5 458 54.6
Aa31LG3G8240 Aethionema arabicum HOM05D005963 ORTHO05D006869 2.9e-121 440.7 402 55.2
Glyma.16G201100 Glycine max HOM05D005963 ORTHO05D006869 3.3e-109 400.6 443 56.0
ATR0661G452 Amborella trichopoda HOM05D005963 ORTHO05D006869 3.5e-79 300.8 407 45.2
Atru.chr1.581 Acer truncatum HOM05D005963 ORTHO05D006869 2.5e-77 294.7 385 51.2
PGSC0003DMG400007558 Solanum tuberosum HOM05D005963 ORTHO05D006869 2.7e-71 274.6 311 47.6
MBI05_g12587_MAGBIO Magnolia biondii HOM05D005963 ORTHO05D006869 3.3e-53 214.5 364 35.7
Ca_05417_v3 Cicer arietinum L. HOM05D005963 ORTHO05D006869 9.7e-53 213.0 740 27.6
Pp3c2_90 Physcomitrium patens HOM05D005963 ORTHO05D006869 3.6e-47 194.5 371 32.6
MBI05_g12586_MAGBIO Magnolia biondii HOM05D005963 ORTHO05D006869 6.1e-47 193.7 186 57.0
Pp3c26_6160 Physcomitrium patens HOM05D005963 ORTHO05D006869 6.1e-47 193.7 439 31.2
Pp3c26_6250 Physcomitrium patens HOM05D005963 ORTHO05D006869 6.1e-47 193.7 439 31.2
Pp3c18_1570 Physcomitrium patens HOM05D005963 ORTHO05D006869 1.0e-46 193.0 371 32.9
Ca_30119_v3 Cicer arietinum L. HOM05D005963 ORTHO05D006869 7.5e-45 186.8 283 43.5
SMO174G0009 Selaginella moellendorffii HOM05D005963 ORTHO05D006869 1.6e-34 152.5 381 28.9
SMO276G0013 Selaginella moellendorffii HOM05D005963 ORTHO05D006869 2.6e-29 135.2 312 30.8
SMO358G0565 Selaginella moellendorffii HOM05D001046 ORTHO05D007174 5.9e-26 124.0 388 28.9
SMO116G0123 Selaginella moellendorffii HOM05D005963 ORTHO05D006869 4.9e-20 104.4 465 25.2
SMO195G0003 Selaginella moellendorffii HOM05D005963 ORTHO05D006869 2.0e-18 99.0 296 27.4
SMO268G0015 Selaginella moellendorffii HOM05D005963 ORTHO05D006869 1.4e-14 86.3 389 23.7
MBI05_g12588_MAGBIO Magnolia biondii HOM05D005963 ORTHO05D006869 2.3e-14 85.5 74 62.2
CDE08G0941 Ceratophyllum demersum HOM05D005963 ORTHO05D006869 1.2e-10 73.2 110 46.4
Cre02.g095117 Chlamydomonas reinhardtii HOM05D010267 ORTHO05D010759 7.8e-10 70.5 347 22.5
Cre01.g041800 Chlamydomonas reinhardtii HOM05D010267 ORTHO05D010759 1.3e-09 69.7 344 23.0
Cre08.g380452 Chlamydomonas reinhardtii HOM05D010267 ORTHO05D010759 5.1e-09 67.8 295 23.7
CBR_g38396 Chara braunii HOM05D002537 ORTHO05D002751 6.6e-09 67.4 167 29.9
SMO116G0125 Selaginella moellendorffii HOM05D025148 ORTHO05D050897 7.3e-08 63.9 298 25.2
Nn3g16283 Nelumbo nucifera HOM05D002537 ORTHO05D002751 1.1e-06 60.1 160 28.8
Dinv24731 Davidia involucrata HOM05D005963 ORTHO05D006869 1.4e-06 59.7 62 53.2
Mapoly0229s0008 Marchantia polymorpha HOM05D002537 ORTHO05D002751 1.4e-06 59.7 190 27.4
Mapoly0086s0081 Marchantia polymorpha HOM05D003725 ORTHO05D004294 3.1e-06 58.5 141 33.3
RhsimUnG0101800 Rhododendron simsii HOM05D002537 ORTHO05D002751 4.0e-06 58.2 113 28.3
Mapoly0001s0312 Marchantia polymorpha HOM05D029505 ORTHO05D006869 5.2e-06 57.8 141 30.5
RcHm_v2.0_Chr4g0428941 Rosa chinensis HOM05D002537 ORTHO05D002751 5.2e-06 57.8 175 28.6
FvH4_4g22720 Fragaria vesca HOM05D002537 ORTHO05D002751 8.9e-06 57.0 123 31.7
FAN12G1604 Fragaria x ananassa HOM05D002537 ORTHO05D002751 8.9e-06 57.0 123 31.7
MD13G1130000 Malus domestica HOM05D002537 ORTHO05D002751 8.9e-06 57.0 162 27.2


User provided reference genes

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