Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy7G00369 Aquilegia oxysepala HOM05D005277 ORTHO05D006319 3.3e-45 184.5 82 100.0
Lalb_Chr01g0021101 Lupinus albus HOM05D005277 ORTHO05D006319 2.1e-36 155.2 81 86.4
Lj1g0008169 Lotus japonicus HOM05D005277 ORTHO05D006319 2.8e-36 154.8 85 82.4
vmacro06693 Vaccinium macrocarpon HOM05D005277 ORTHO05D006319 4.8e-36 154.1 84 81.0
arahy.Tifrunner.gnm1.ann1.A7XXX8 Arachis hypogaea HOM05D005277 ORTHO05D006319 6.2e-36 153.7 87 77.0
arahy.Tifrunner.gnm1.ann1.I9WHAY Arachis hypogaea HOM05D005277 ORTHO05D006319 6.2e-36 153.7 87 77.0
TPR.G37794 Trifolium pratense HOM05D005277 ORTHO05D006319 1.1e-35 152.9 85 81.2
Ciclev10023111m.g Citrus clementina HOM05D005277 ORTHO05D006319 3.1e-35 151.4 85 81.2
Sc23g0003110 Simmondsia chinensis HOM05D005277 ORTHO05D006319 3.1e-35 151.4 82 80.5
CANSAT56G2015 Cannabis sativa HOM05D005277 ORTHO05D006319 4.0e-35 151.0 80 83.8
Psat3g111720 Pisum sativum HOM05D005277 ORTHO05D006319 5.3e-35 150.6 85 80.0
AT4G00585 Arabidopsis thaliana HOM05D005277 ORTHO05D006319 6.9e-35 150.2 82 82.9
Nn1g01427 Nelumbo nucifera HOM05D005277 ORTHO05D006319 6.9e-35 150.2 85 81.2
Os09g0560300 Oryza sativa ssp. japonica HOM05D005277 ORTHO05D006319 6.9e-35 150.2 79 83.5
HanXRQChr02g0054711 Helianthus annuus HOM05D005277 ORTHO05D006319 9.0e-35 149.8 83 79.5
Hund16947 Selenicereus undatus HOM05D005277 ORTHO05D006319 9.0e-35 149.8 82 79.3
Cfa003961 Carpinus fangiana HOM05D005277 ORTHO05D006319 1.2e-34 149.4 85 80.0
Medtr7g076630 Medicago truncatula HOM05D005277 ORTHO05D006319 1.2e-34 149.4 79 83.5
Phvul.008G068800 Phaseolus vulgaris HOM05D005277 ORTHO05D006319 1.2e-34 149.4 82 82.9
Ca_07884_v3 Cicer arietinum L. HOM05D005277 ORTHO05D006319 1.5e-34 149.1 85 82.4
COL.COLO4_12662 Corchorus olitorius HOM05D005277 ORTHO05D006319 1.5e-34 149.1 85 78.8
Potri.002G155800 Populus trichocarpa HOM05D005277 ORTHO05D006319 1.5e-34 149.1 87 79.3
FAN01G0371 Fragaria x ananassa HOM05D005277 ORTHO05D006319 2.6e-34 148.3 84 81.0
FAN06G3712 Fragaria x ananassa HOM05D005277 ORTHO05D006319 2.6e-34 148.3 84 81.0
FAN06G3877 Fragaria x ananassa HOM05D005277 ORTHO05D006319 2.6e-34 148.3 84 81.0
MBI07_g12793_MAGBIO Magnolia biondii HOM05D005277 ORTHO05D006319 2.6e-34 148.3 88 80.7
Zm00001eb104680 Zea mays HOM05D005277 ORTHO05D006319 2.6e-34 148.3 78 84.6
CiPaw.02G027600 Carya illinoinensis HOM05D005277 ORTHO05D006319 3.4e-34 147.9 85 78.8
FAN03G2608 Fragaria x ananassa HOM05D005277 ORTHO05D006319 3.4e-34 147.9 85 80.0
HanXRQChr08g0209231 Helianthus annuus HOM05D005277 ORTHO05D006319 3.4e-34 147.9 80 80.0
Lsat_1_v5_gn_8_8281 Lactuca sativa HOM05D005277 ORTHO05D006319 3.4e-34 147.9 88 77.3
Solyc03g025910.3 Solanum lycopersicum HOM05D005277 ORTHO05D006319 3.4e-34 147.9 79 81.0
Sopen03g004720 Solanum pennellii HOM05D005277 ORTHO05D006319 3.4e-34 147.9 79 81.0
PGSC0003DMG400014288 Solanum tuberosum HOM05D005277 ORTHO05D006319 3.4e-34 147.9 79 81.0
Potri.014G079800 Populus trichocarpa HOM05D005277 ORTHO05D006319 5.8e-34 147.1 87 78.2
Prupe.2G159900 Prunus persica HOM05D005277 ORTHO05D006319 5.8e-34 147.1 84 82.1
AL6G52850 Arabidopsis lyrata HOM05D005277 ORTHO05D006319 7.6e-34 146.7 82 81.7
EL10Ac1g00522 Beta vulgaris HOM05D005277 ORTHO05D006319 7.6e-34 146.7 78 78.2
BcaNung07162 Brassica carinata HOM05D005277 ORTHO05D006319 7.6e-34 146.7 79 81.0
Migut.F00352 Erythranthe guttata HOM05D005277 ORTHO05D006319 7.6e-34 146.7 83 79.5
THA.LOC104801449 Tarenaya hassleriana HOM05D005277 ORTHO05D006319 7.6e-34 146.7 84 79.8
CSS0040378 Camellia sinensis var. sinensis HOM05D005277 ORTHO05D006319 9.9e-34 146.4 88 79.5
MD01G1052300 Malus domestica HOM05D005277 ORTHO05D006319 9.9e-34 146.4 85 81.2
CARHR248750 Cardamine hirsuta HOM05D005277 ORTHO05D006319 1.3e-33 146.0 82 80.5
Thhalv10026679m.g Eutrema salsugineum HOM05D005277 ORTHO05D006319 1.3e-33 146.0 82 80.5
Lalb_Chr19g0127071 Lupinus albus HOM05D005277 ORTHO05D006319 1.3e-33 146.0 85 78.8
Peaxi162Scf01969g00020 Petunia axillaris HOM05D005277 ORTHO05D006319 1.3e-33 146.0 81 80.2
RcHm_v2.0_Chr1g0353371 Rosa chinensis HOM05D005277 ORTHO05D006319 1.3e-33 146.0 85 77.6
Manes.01G260200 Manihot esculenta HOM05D005277 ORTHO05D006319 2.2e-33 145.2 86 80.2
ECA233G3829 Erigeron canadensis HOM05D005277 ORTHO05D006319 2.9e-33 144.8 82 76.8
Gohir.D07G149400 Gossypium hirsutum HOM05D005277 ORTHO05D006319 2.9e-33 144.8 82 79.3
Gorai.001G170800 Gossypium raimondii HOM05D005277 ORTHO05D006319 2.9e-33 144.8 82 79.3
BcaC04g24159 Brassica carinata HOM05D005277 ORTHO05D006319 3.8e-33 144.4 79 79.7
A03p65670 Brassica napus HOM05D005277 ORTHO05D006319 3.8e-33 144.4 81 80.2
BraA03t15618Z Brassica rapa HOM05D005277 ORTHO05D006319 3.8e-33 144.4 81 80.2
AUR62022763 Chenopodium quinoa HOM05D005277 ORTHO05D006319 3.8e-33 144.4 79 77.2
Gohir.A08G129800 Gossypium hirsutum HOM05D005277 ORTHO05D006319 3.8e-33 144.4 81 80.2
Gorai.004G156900 Gossypium raimondii HOM05D005277 ORTHO05D006319 3.8e-33 144.4 83 78.3
CsaV3_2G015020 Cucumis sativus L. HOM05D005277 ORTHO05D006319 4.9e-33 144.1 83 79.5
THA.LOC104817018 Tarenaya hassleriana HOM05D005277 ORTHO05D006319 4.9e-33 144.1 80 82.5
CDE05G2617 Ceratophyllum demersum HOM05D005277 ORTHO05D006319 6.4e-33 143.7 83 80.7
Duzib133G1303 Durio zibethinus HOM05D005277 ORTHO05D006319 6.4e-33 143.7 84 78.6
Thhalv10029049m.g Eutrema salsugineum HOM05D005277 ORTHO05D006319 6.4e-33 143.7 82 79.3
Glyma.09G263000 Glycine max HOM05D005277 ORTHO05D006319 6.4e-33 143.7 85 77.6
PGR042G3267 Punica granatum HOM05D005277 ORTHO05D006319 6.4e-33 143.7 80 81.2
Thecc.01G365200 Theobroma cacao HOM05D005277 ORTHO05D006319 6.4e-33 143.7 80 80.0
TWI23G0263 Tripterygium wilfordii HOM05D005277 ORTHO05D006319 6.4e-33 143.7 86 74.4
ClCG11G004150 Citrullus lanatus HOM05D005277 ORTHO05D006319 8.4e-33 143.3 83 80.7
TWI59G0525 Tripterygium wilfordii HOM05D005277 ORTHO05D006319 8.4e-33 143.3 88 76.1
HPP92_016701 Vanilla planifolia HOM05D005277 ORTHO05D006319 8.4e-33 143.3 88 75.0
A09p00410 Brassica napus HOM05D005277 ORTHO05D006319 1.1e-32 142.9 79 79.7
Gohir.A07G143600 Gossypium hirsutum HOM05D005277 ORTHO05D006319 1.1e-32 142.9 84 77.4
Hma1.2p1_2482F.1_g323010 Hydrangea macrophylla HOM05D005277 ORTHO05D006319 1.1e-32 142.9 89 73.0
Nitab4.5_0000716g0150 Nicotiana tabacum HOM05D005277 ORTHO05D006319 1.1e-32 142.9 79 78.5
Nitab4.5_0003365g0020 Nicotiana tabacum HOM05D005277 ORTHO05D006319 1.1e-32 142.9 79 78.5
Sp6g00620 Schrenkiella parvula HOM05D005277 ORTHO05D006319 1.1e-32 142.9 82 79.3
CDE06G0676 Ceratophyllum demersum HOM05D005277 ORTHO05D006319 1.4e-32 142.5 80 80.0
AUR62004311 Chenopodium quinoa HOM05D005277 ORTHO05D006319 1.4e-32 142.5 79 75.9
MELO3C023322.2 Cucumis melo HOM05D005277 ORTHO05D006319 1.4e-32 142.5 83 77.1
Manes.05G038000 Manihot esculenta HOM05D005277 ORTHO05D006319 1.4e-32 142.5 86 79.1
Oeu021782.1 Olea europaea HOM05D005277 ORTHO05D006319 1.4e-32 142.5 88 76.1
PSO782G2674 Papaver somniferum HOM05D005277 ORTHO05D006319 1.4e-32 142.5 88 77.3
C07p62700 Brassica napus HOM05D005277 ORTHO05D006319 1.9e-32 142.1 80 80.0
BolC7t46684H Brassica oleracea HOM05D005277 ORTHO05D006319 1.9e-32 142.1 80 80.0
Carub.0006s3664 Capsella rubella HOM05D005277 ORTHO05D006319 1.9e-32 142.1 82 79.3
Duzib138G0488 Durio zibethinus HOM05D005277 ORTHO05D006319 1.9e-32 142.1 84 77.4
Aa31LG5G410 Aethionema arabicum HOM05D005277 ORTHO05D006319 3.2e-32 141.4 82 78.0
BolC3t16185H Brassica oleracea HOM05D005277 ORTHO05D006319 3.2e-32 141.4 77 80.5
Nitab4.5_0000080g0040 Nicotiana tabacum HOM05D005277 ORTHO05D006319 3.2e-32 141.4 83 75.9
GSVIVG01026823001 Vitis vinifera HOM05D005277 ORTHO05D006319 3.2e-32 141.4 83 75.9
DCAR_018191 Daucus carota HOM05D005277 ORTHO05D006319 4.2e-32 141.0 77 80.5
Glyma.18G229200 Glycine max HOM05D005277 ORTHO05D006319 4.2e-32 141.0 85 76.5
Actinidia32868 Actinidia chinensis HOM05D005277 ORTHO05D006319 5.4e-32 140.6 87 75.9
CiPaw.01G056300 Carya illinoinensis HOM05D005277 ORTHO05D006319 5.4e-32 140.6 85 76.5
Actinidia34103 Actinidia chinensis HOM05D005277 ORTHO05D006319 7.1e-32 140.2 87 74.7
BcaC01g06868 Brassica carinata HOM05D005277 ORTHO05D006319 9.3e-32 139.8 76 80.3
Gohir.D08G151200 Gossypium hirsutum HOM05D005277 ORTHO05D006319 9.3e-32 139.8 85 74.1
A03p32120 Brassica napus HOM05D005277 ORTHO05D006319 2.1e-31 138.7 79 79.7
BraA03t12382Z Brassica rapa HOM05D005277 ORTHO05D006319 2.1e-31 138.7 79 79.7
BcaB01g02260 Brassica carinata HOM05D005277 ORTHO05D006319 3.5e-31 137.9 82 76.8
Sed0005058 Sechium edule HOM05D005277 ORTHO05D006319 3.5e-31 137.9 80 78.8
Sed0006100 Sechium edule HOM05D005277 ORTHO05D006319 6.0e-31 137.1 85 75.3
BcaNung05357 Brassica carinata HOM05D005277 ORTHO05D006319 7.8e-31 136.7 76 78.9
C03p39140 Brassica napus HOM05D005277 ORTHO05D006319 7.8e-31 136.7 79 78.5
Peaxi162Scf00915g00031 Petunia axillaris HOM05D005277 ORTHO05D006319 1.7e-30 135.6 80 75.0
Cc00_g02540 Coffea canephora HOM05D005277 ORTHO05D006319 3.0e-30 134.8 76 77.6
Sc02g0002070 Simmondsia chinensis HOM05D003698 ORTHO05D004320 1.5e-29 132.5 80 73.8
GSVIVG01010541001 Vitis vinifera HOM05D005277 ORTHO05D006319 7.3e-29 130.2 62 87.1
SalBow2G0266 Salvia bowleyana HOM05D005277 ORTHO05D006319 4.8e-28 127.5 94 63.8
Cc02_g03110 Coffea canephora HOM05D005277 ORTHO05D006319 2.0e-26 122.1 62 83.9
Rhsim03G0179700 Rhododendron simsii HOM05D005277 ORTHO05D006319 9.9e-26 119.8 154 42.9
Pp3c7_13700 Physcomitrium patens HOM05D005277 ORTHO05D006319 6.2e-20 100.5 80 61.2
RcHm_v2.0_Chr0c39g0503241 Rosa chinensis HOM05D005277 ORTHO05D006319 8.1e-20 100.1 56 80.4
RcHm_v2.0_Chr1g0353201 Rosa chinensis HOM05D005277 ORTHO05D006319 8.1e-20 100.1 56 80.4
MBI06_g06483_MAGBIO Magnolia biondii HOM05D005277 ORTHO05D006319 1.1e-19 99.8 63 79.4
Zm00001eb320330 Zea mays HOM05D005277 ORTHO05D006319 2.4e-19 98.6 54 81.5
Mapoly0023s0078 Marchantia polymorpha HOM05D005277 ORTHO05D006319 3.1e-19 98.2 80 60.0
SMO203G0011 Selaginella moellendorffii HOM05D005277 ORTHO05D006319 9.0e-19 96.7 61 65.6
Hund27308 Selenicereus undatus HOM05D005277 ORTHO05D006319 2.0e-18 95.5 62 71.0
RcHm_v2.0_Chr1g0353261 Rosa chinensis HOM05D005277 ORTHO05D006319 4.5e-18 94.4 63 71.4
Atru.chr5.442 Acer truncatum HOM05D005277 ORTHO05D006319 5.8e-18 94.0 55 78.2
C09p00490 Brassica napus HOM05D005277 ORTHO05D006319 7.6e-18 93.6 56 75.0
RcHm_v2.0_Chr1g0353351 Rosa chinensis HOM05D005277 ORTHO05D006319 7.6e-18 93.6 62 72.6
Sp7g35520 Schrenkiella parvula HOM05D002845 ORTHO05D006319 7.6e-18 93.6 59 74.6
Haze_15461 Corylus avellana HOM05D005277 ORTHO05D006319 1.7e-17 92.4 63 71.4
BraA09t35720Z Brassica rapa HOM05D005277 ORTHO05D006319 2.2e-17 92.0 56 75.0
Ah.05g176400 Amaranthus hybridus HOM05D005277 ORTHO05D006319 2.9e-17 91.7 55 72.7
Sabra14G0058000 Salix brachista HOM05D005277 ORTHO05D006319 2.9e-17 91.7 63 71.4
BcaNung05359 Brassica carinata HOM05D005277 ORTHO05D006319 8.4e-17 90.1 53 75.5
BolC9t52983H Brassica oleracea HOM05D005277 ORTHO05D006319 1.4e-16 89.4 56 75.0
unitig_0.g2484 Utricularia gibba HOM05D002154 ORTHO05D002362 1.4e-16 89.4 62 71.0
QL08p049830 Quercus lobata HOM05D005277 ORTHO05D006319 1.9e-16 89.0 62 71.0
HPP92_028083 Vanilla planifolia HOM05D005277 ORTHO05D006319 2.5e-16 88.6 66 68.2
Nitab4.5_0008315g0010 Nicotiana tabacum HOM05D005277 ORTHO05D006319 7.1e-16 87.0 60 66.7
SHI13469 Sapria himalayana HOM05D005277 ORTHO05D006319 7.1e-16 87.0 56 67.9
Cpa.g.c32742 Carica papaya HOM05D005277 ORTHO05D006319 9.3e-16 86.7 61 67.2
CSS0022794 Camellia sinensis var. sinensis HOM05D005277 ORTHO05D006319 2.1e-15 85.5 53 75.5
ATR0721G079 Amborella trichopoda HOM05D005277 ORTHO05D006319 1.0e-14 83.2 60 68.3
ATR0763G077 Amborella trichopoda HOM05D005277 ORTHO05D006319 2.3e-14 82.0 59 69.5
ATR0174G019 Amborella trichopoda HOM05D005277 ORTHO05D006319 3.3e-13 78.2 59 67.8
AagrBONN_evm.TU.Sc2ySwM_369.4 Anthoceros agrestis HOM05D005277 ORTHO05D006319 1.3e-12 76.3 75 53.3
CSS0038928 Camellia sinensis var. sinensis HOM05D005277 ORTHO05D006319 2.1e-12 75.5 64 62.5
PRCOL_00003506 Prasinoderma coloniale HOM05D005277 ORTHO05D006319 6.2e-12 73.9 67 50.7
FAN10G1490 Fragaria x ananassa HOM05D005277 ORTHO05D006319 8.2e-12 73.6 39 82.1
MCO13G435 Micromonas commoda HOM05D005277 ORTHO05D006319 2.0e-10 68.9 70 52.9


User provided reference genes

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