Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy7G00339 Aquilegia oxysepala HOM05D005367 ORTHO05D006328 6.7e-96 354.4 229 100.0
TAR375G0799 Trochodendron aralioides HOM05D005367 ORTHO05D006328 8.6e-35 151.4 162 52.5
Nn1g01501 Nelumbo nucifera HOM05D005367 ORTHO05D006328 1.5e-34 150.6 161 51.6
TAR636G2389 Trochodendron aralioides HOM05D003133 ORTHO05D003642 2.8e-33 146.4 163 51.5
Haze_15487 Corylus avellana HOM05D005367 ORTHO05D006328 4.9e-30 135.6 157 50.3
Nn6g33454 Nelumbo nucifera HOM05D005367 ORTHO05D006328 3.5e-28 129.4 156 48.7
PSO478G0766 Papaver somniferum HOM05D005367 ORTHO05D006328 3.5e-28 129.4 158 46.8
PSO782G1827 Papaver somniferum HOM05D005367 ORTHO05D006328 3.0e-27 126.3 156 46.8
Cfa003939 Carpinus fangiana HOM05D005367 ORTHO05D006328 1.9e-26 123.6 161 46.6
Dinv43805 Davidia involucrata HOM05D005367 ORTHO05D006328 2.5e-26 123.2 153 48.4
CiPaw.02G029900 Carya illinoinensis HOM05D005367 ORTHO05D006328 5.6e-26 122.1 164 42.7
Duzib205G1257 Durio zibethinus HOM05D005367 ORTHO05D006328 9.5e-26 121.3 157 47.1
Manes.06G148200 Manihot esculenta HOM05D005367 ORTHO05D006328 2.8e-25 119.8 164 43.3
Gorai.007G098700 Gossypium raimondii HOM05D005367 ORTHO05D006328 4.7e-25 119.0 160 41.9
Nitab4.5_0001702g0150 Nicotiana tabacum HOM05D005367 ORTHO05D006328 4.7e-25 119.0 150 46.0
Peaxi162Scf00191g01425 Petunia axillaris HOM05D005367 ORTHO05D006328 4.7e-25 119.0 154 43.5
Gohir.D11G092400 Gossypium hirsutum HOM05D005367 ORTHO05D006328 8.1e-25 118.2 156 41.7
GSVIVG01026893001 Vitis vinifera HOM05D005367 ORTHO05D006328 1.1e-24 117.9 148 45.3
Sopen05g028210 Solanum pennellii HOM05D005367 ORTHO05D006328 2.3e-24 116.7 152 45.4
CSS0033809 Camellia sinensis var. sinensis HOM05D005367 ORTHO05D006328 3.1e-24 116.3 147 46.9
COL.COLO4_14330 Corchorus olitorius HOM05D005367 ORTHO05D006328 3.1e-24 116.3 160 41.2
Duzib133G0249 Durio zibethinus HOM05D005367 ORTHO05D006328 4.0e-24 115.9 156 41.7
QL08p049031 Quercus lobata HOM05D005367 ORTHO05D006328 4.0e-24 115.9 148 43.2
Solyc05g049880.3 Solanum lycopersicum HOM05D005367 ORTHO05D006328 4.0e-24 115.9 152 45.4
Gohir.A11G088100 Gossypium hirsutum HOM05D005367 ORTHO05D006328 6.8e-24 115.2 160 40.6
Nitab4.5_0008050g0010 Nicotiana tabacum HOM05D005367 ORTHO05D006328 6.8e-24 115.2 147 45.6
Glyma.18G231900 Glycine max HOM05D005367 ORTHO05D006328 8.9e-24 114.8 164 37.8
Hma1.2p1_0001F.1_g001380 Hydrangea macrophylla HOM05D005367 ORTHO05D006328 8.9e-24 114.8 150 45.3
Prupe.2G167900 Prunus persica HOM05D005367 ORTHO05D006328 1.2e-23 114.4 148 43.2
Cpa.g.sc18.245 Carica papaya HOM05D005367 ORTHO05D006328 3.4e-23 112.8 160 42.5
HPP92_022052 Vanilla planifolia HOM05D005367 ORTHO05D006328 7.6e-23 111.7 153 39.9
Gohir.D08G152300 Gossypium hirsutum HOM05D005367 ORTHO05D006328 9.9e-23 111.3 168 38.1
Gorai.004G158200 Gossypium raimondii HOM05D005367 ORTHO05D006328 9.9e-23 111.3 168 38.1
ClCG06G003800 Citrullus lanatus HOM05D005367 ORTHO05D006328 1.3e-22 110.9 152 40.8
HPP92_027620 Vanilla planifolia HOM05D005367 ORTHO05D006328 1.3e-22 110.9 153 39.9
Cc02_g37850 Coffea canephora HOM05D005367 ORTHO05D006328 2.9e-22 109.8 156 43.6
Gohir.A08G130800 Gossypium hirsutum HOM05D005367 ORTHO05D006328 2.9e-22 109.8 168 38.1
Thecc.01G360700 Theobroma cacao HOM05D005367 ORTHO05D006328 4.9e-22 109.0 158 41.8
CSS0040093 Camellia sinensis var. sinensis HOM05D005367 ORTHO05D006328 8.3e-22 108.2 147 44.9
COL.COLO4_12698 Corchorus olitorius HOM05D005367 ORTHO05D006328 8.3e-22 108.2 165 37.0
Ciclev10006075m.g Citrus clementina HOM05D005367 ORTHO05D006328 1.1e-21 107.8 154 40.3
Sed0017642 Sechium edule HOM05D005367 ORTHO05D006328 1.1e-21 107.8 152 38.2
QL09p013904 Quercus lobata HOM05D005367 ORTHO05D006328 1.4e-21 107.5 157 40.8
Actinidia20916 Actinidia chinensis HOM05D005367 ORTHO05D006328 1.9e-21 107.1 150 42.0
Sc01g0003360 Simmondsia chinensis HOM05D005367 ORTHO05D006328 1.9e-21 107.1 150 42.0
Atru.chr1.440 Acer truncatum HOM05D005367 ORTHO05D006328 3.2e-21 106.3 150 45.3
Lj1g0004821 Lotus japonicus HOM05D005367 ORTHO05D006328 4.1e-21 105.9 158 39.2
MSTRG.20826 Avicennia marina HOM05D005367 ORTHO05D006328 5.4e-21 105.5 146 42.5
PGSC0003DMG400021656 Solanum tuberosum HOM05D005367 ORTHO05D006328 5.4e-21 105.5 152 44.1
HanXRQChr16g0522831 Helianthus annuus HOM05D005367 ORTHO05D006328 9.2e-21 104.8 148 41.9
PGR031G3282 Punica granatum HOM05D005367 ORTHO05D006328 9.2e-21 104.8 147 44.2
TWI14G0016 Tripterygium wilfordii HOM05D005367 ORTHO05D006328 9.2e-21 104.8 157 40.1
Ciclev10021865m.g Citrus clementina HOM05D005367 ORTHO05D006328 1.2e-20 104.4 159 40.3
Atru.chr5.466 Acer truncatum HOM05D005367 ORTHO05D006328 1.6e-20 104.0 157 37.6
Eucgr.D02282 Eucalyptus grandis HOM05D005367 ORTHO05D006328 1.6e-20 104.0 164 43.3
Oeu056369.1 Olea europaea HOM05D005367 ORTHO05D006328 2.7e-20 103.2 149 43.6
Lalb_Chr24g0401631 Lupinus albus HOM05D005367 ORTHO05D006328 3.5e-20 102.8 147 38.8
Ca_07909_v3 Cicer arietinum L. HOM05D005367 ORTHO05D006328 4.6e-20 102.4 150 39.3
RcHm_v2.0_Chr1g0377581 Rosa chinensis HOM05D005367 ORTHO05D006328 4.6e-20 102.4 147 39.5
PGR042G0868 Punica granatum HOM05D005367 ORTHO05D006328 6.0e-20 102.1 147 40.1
FAN10G3657 Fragaria x ananassa HOM05D005367 ORTHO05D006328 1.0e-19 101.3 154 39.6
Lalb_Chr01g0011531 Lupinus albus HOM05D005367 ORTHO05D006328 1.0e-19 101.3 147 38.1
Psat3g109400 Pisum sativum HOM05D005367 ORTHO05D006328 1.0e-19 101.3 149 42.3
MD07G1139200 Malus domestica HOM05D005367 ORTHO05D006328 1.3e-19 100.9 144 38.9
CsaV3_6G000470 Cucumis sativus L. HOM05D005367 ORTHO05D006328 3.9e-19 99.4 154 39.0
MD01G1057500 Malus domestica HOM05D005367 ORTHO05D006328 3.9e-19 99.4 144 39.6
SalBow3G2019 Salvia bowleyana HOM05D005367 ORTHO05D006328 3.9e-19 99.4 145 40.0
THA.LOC104801446 Tarenaya hassleriana HOM05D005367 ORTHO05D006328 3.9e-19 99.4 147 41.5
Atru.chr1.441 Acer truncatum HOM05D005367 ORTHO05D006328 6.6e-19 98.6 149 40.3
FAN10G4254 Fragaria x ananassa HOM05D005367 ORTHO05D006328 6.6e-19 98.6 163 36.8
MD01G1202200 Malus domestica HOM05D005367 ORTHO05D006328 6.6e-19 98.6 151 42.4
Hund16930 Selenicereus undatus HOM05D005367 ORTHO05D006328 6.6e-19 98.6 148 40.5
FvH4_7g29600 Fragaria vesca HOM05D005367 ORTHO05D006328 8.6e-19 98.2 163 36.2
MELO3C021217.2 Cucumis melo HOM05D005367 ORTHO05D006328 1.1e-18 97.8 150 38.0
FAN06G0563 Fragaria x ananassa HOM05D005367 ORTHO05D006328 1.1e-18 97.8 153 40.5
Lj9A582T87 Lonicera japonica HOM05D005367 ORTHO05D006328 1.1e-18 97.8 150 38.0
vmacro06668 Vaccinium macrocarpon HOM05D005367 ORTHO05D006328 1.1e-18 97.8 154 41.6
ECA234G3275 Erigeron canadensis HOM05D005367 ORTHO05D006328 1.5e-18 97.4 151 39.7
FvH4_7g14150 Fragaria vesca HOM05D005367 ORTHO05D006328 1.5e-18 97.4 153 40.5
FAN10G0042 Fragaria x ananassa HOM05D005367 ORTHO05D006328 1.5e-18 97.4 153 40.5
RcHm_v2.0_Chr1g0355051 Rosa chinensis HOM05D005367 ORTHO05D006328 1.5e-18 97.4 149 37.6
TWI59G0064 Tripterygium wilfordii HOM05D005367 ORTHO05D006328 2.5e-18 96.7 157 37.6
TPR.G37815 Trifolium pratense HOM05D005367 ORTHO05D006328 3.3e-18 96.3 153 37.9
CANSAT56G3377 Cannabis sativa HOM05D005367 ORTHO05D006328 4.3e-18 95.9 148 38.5
FAN01G2456 Fragaria x ananassa HOM05D005367 ORTHO05D006328 5.6e-18 95.5 153 39.9
arahy.Tifrunner.gnm1.ann1.D8DQXR Arachis hypogaea HOM05D005367 ORTHO05D006328 7.3e-18 95.1 152 36.8
EL10Ac1g00429 Beta vulgaris HOM05D005367 ORTHO05D006328 7.3e-18 95.1 146 37.7
FAN03G1221 Fragaria x ananassa HOM05D005367 ORTHO05D006328 1.2e-17 94.4 153 39.9
Migut.B01742 Erythranthe guttata HOM05D005367 ORTHO05D006328 1.6e-17 94.0 147 40.1
arahy.Tifrunner.gnm1.ann1.G5US7K Arachis hypogaea HOM05D005367 ORTHO05D006328 2.8e-17 93.2 152 36.8
Eucgr.E00158 Eucalyptus grandis HOM05D005367 ORTHO05D006328 4.7e-17 92.4 162 35.8
Lsat_1_v5_gn_4_36280 Lactuca sativa HOM05D005367 ORTHO05D006328 6.2e-17 92.0 152 38.2
MBI17_g24635_MAGBIO Magnolia biondii HOM05D005367 ORTHO05D006328 6.2e-17 92.0 181 32.6
SGA_v2.0_scaffold11G05663 Striga asiatica HOM05D000368 ORTHO05D006328 6.2e-17 92.0 146 37.7
Manes.01G258500 Manihot esculenta HOM05D005367 ORTHO05D006328 8.1e-17 91.7 145 37.2
Potri.014G082600 Populus trichocarpa HOM05D005367 ORTHO05D006328 8.1e-17 91.7 145 35.2
vmacro13291 Vaccinium macrocarpon HOM05D005367 ORTHO05D006328 1.4e-16 90.9 148 40.5
C08p53830 Brassica napus HOM05D006991 ORTHO05D009188 2.4e-16 90.1 148 39.9
BolC8t52897H Brassica oleracea HOM05D000368 ORTHO05D000289 2.4e-16 90.1 148 39.9
Medtr7g077380 Medicago truncatula HOM05D005367 ORTHO05D006328 3.1e-16 89.7 149 36.2
Thhalv10008538m.g Eutrema salsugineum HOM05D005367 ORTHO05D006328 5.2e-16 89.0 147 38.1
Potri.002G158500 Populus trichocarpa HOM05D005367 ORTHO05D006328 6.8e-16 88.6 146 37.7
VMungo1383G2792 Vigna mungo HOM05D005367 ORTHO05D006328 6.8e-16 88.6 149 36.9
Manes.05G036200 Manihot esculenta HOM05D005367 ORTHO05D006328 8.9e-16 88.2 145 36.6
Dinv35219 Davidia involucrata HOM05D005367 ORTHO05D006328 2.0e-15 87.0 138 43.5
RcHm_v2.0_Chr1g0354801 Rosa chinensis HOM05D005367 ORTHO05D006328 2.0e-15 87.0 149 38.3
DCAR_010300 Daucus carota HOM05D005367 ORTHO05D006328 3.4e-15 86.3 161 37.9
AUR62004342 Chenopodium quinoa HOM05D005367 ORTHO05D006328 4.4e-15 85.9 144 38.2
Phvul.008G065800 Phaseolus vulgaris HOM05D005367 ORTHO05D006328 4.4e-15 85.9 146 32.2
BraA09t42260Z Brassica rapa HOM05D005367 ORTHO05D006328 2.2e-14 83.6 147 38.1
Sp1g00570 Schrenkiella parvula HOM05D005367 ORTHO05D006328 2.2e-14 83.6 147 36.7
Ah.05g180710 Amaranthus hybridus HOM05D005367 ORTHO05D006328 2.9e-14 83.2 145 36.6
AL1G10610 Arabidopsis lyrata HOM05D005367 ORTHO05D006328 3.8e-14 82.8 149 36.2
Rhsim03G0187100 Rhododendron simsii HOM05D005367 ORTHO05D006328 6.4e-14 82.0 171 36.3
AT1G01730 Arabidopsis thaliana HOM05D005367 ORTHO05D006328 1.9e-13 80.5 158 34.8
unitig_61.g26388 Utricularia gibba HOM05D005367 ORTHO05D006328 2.4e-13 80.1 148 33.8
Carub.0001s0048 Capsella rubella HOM05D005367 ORTHO05D006328 3.2e-13 79.7 149 34.9
Potri.015G145000 Populus trichocarpa HOM05D005367 ORTHO05D006328 3.2e-13 79.7 152 36.2
VMungo1383G2823 Vigna mungo HOM05D005367 ORTHO05D006328 5.4e-13 79.0 157 31.2
Actinidia34119 Actinidia chinensis HOM05D005367 ORTHO05D006328 7.1e-13 78.6 146 37.0
FAN03G1577 Fragaria x ananassa HOM05D005367 ORTHO05D006328 2.1e-12 77.0 144 32.6
DCAR_000242 Daucus carota HOM05D005367 ORTHO05D006328 4.0e-08 62.8 113 37.2
CDE08G1175 Ceratophyllum demersum HOM05D005367 ORTHO05D006328 1.5e-07 60.8 95 40.0
FAN10G0871 Fragaria x ananassa HOM05D005367 ORTHO05D006328 1.5e-07 60.8 59 47.5
Sabra14G0059900 Salix brachista HOM05D005367 ORTHO05D006328 1.5e-07 60.8 120 34.2
Prupe.2G295600 Prunus persica HOM05D005367 ORTHO05D006328 2.0e-07 60.5 125 34.4
FAN28G3009 Fragaria x ananassa HOM05D005367 ORTHO05D006328 2.6e-07 60.1 65 44.6
FAN10G3879 Fragaria x ananassa HOM05D005367 ORTHO05D006328 5.8e-07 58.9 59 45.8
FAN10G2377 Fragaria x ananassa HOM05D005367 ORTHO05D006328 7.6e-07 58.5 81 40.7
FAN10G1555 Fragaria x ananassa HOM05D005367 ORTHO05D006328 9.9e-07 58.2 67 47.8
Os04g0556900 Oryza sativa ssp. japonica HOM05D005367 ORTHO05D006328 9.9e-07 58.2 158 28.5
FAN06G3705 Fragaria x ananassa HOM05D005367 ORTHO05D006328 1.3e-06 57.8 160 30.6
FAN06G4288 Fragaria x ananassa HOM05D005367 ORTHO05D006328 1.3e-06 57.8 160 30.6
MD01G1056800 Malus domestica HOM05D005367 ORTHO05D006328 1.3e-06 57.8 39 56.4
Aa31LG1G11100 Aethionema arabicum HOM05D005367 ORTHO05D006328 6.4e-06 55.5 38 60.5


User provided reference genes

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