Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy7G00301 Aquilegia oxysepala HOM05D005821 ORTHO05D006649 1.1e-206 723.0 349 100.0
Prupe.2G175700 Prunus persica HOM05D005821 ORTHO05D006649 1.3e-154 550.1 355 73.8
Nn1g01648 Nelumbo nucifera HOM05D005821 ORTHO05D006649 3.4e-152 542.0 355 72.7
TWI59G0254 Tripterygium wilfordii HOM05D005821 ORTHO05D006649 1.7e-151 539.7 352 73.9
CsaV3_6G000870 Cucumis sativus L. HOM05D005821 ORTHO05D006649 2.2e-151 539.3 353 70.5
RcHm_v2.0_Chr1g0357291 Rosa chinensis HOM05D005821 ORTHO05D006649 3.8e-151 538.5 353 73.7
FvH4_7g15100 Fragaria vesca HOM05D005821 ORTHO05D006649 1.1e-150 537.0 353 73.9
MD07G1132800 Malus domestica HOM05D005821 ORTHO05D006649 2.5e-150 535.8 353 72.2
ClCG06G003440 Citrullus lanatus HOM05D005821 ORTHO05D006649 3.2e-150 535.4 353 70.3
VMungo1383G1209 Vigna mungo HOM05D005821 ORTHO05D006649 4.2e-150 535.0 347 71.5
Migut.B01789 Erythranthe guttata HOM05D005821 ORTHO05D006649 5.5e-150 534.6 352 69.9
TAR375G0805 Trochodendron aralioides HOM05D005821 ORTHO05D006649 7.2e-150 534.3 318 78.3
Dinv43854 Davidia involucrata HOM05D005821 ORTHO05D006649 9.4e-150 533.9 336 75.0
Lj1g0010902 Lotus japonicus HOM05D005821 ORTHO05D006649 6.1e-149 531.2 342 73.1
TAR374G1257 Trochodendron aralioides HOM05D005821 ORTHO05D006649 6.1e-149 531.2 354 72.9
Cfa003883 Carpinus fangiana HOM05D005821 ORTHO05D006649 1.0e-148 530.4 353 73.1
Lj9A587T97 Lonicera japonica HOM05D005821 ORTHO05D006649 1.0e-148 530.4 353 73.4
Phvul.008G058100 Phaseolus vulgaris HOM05D005821 ORTHO05D006649 1.0e-148 530.4 347 71.2
Haze_15551 Corylus avellana HOM05D005821 ORTHO05D006649 1.4e-148 530.0 359 72.1
Actinidia10061 Actinidia chinensis HOM05D005821 ORTHO05D006649 2.3e-148 529.3 317 77.3
Sed0010880 Sechium edule HOM05D005821 ORTHO05D006649 3.0e-148 528.9 353 70.3
FAN10G3455 Fragaria x ananassa HOM05D005821 ORTHO05D006649 5.2e-148 528.1 353 73.1
Potri.002G162900 Populus trichocarpa HOM05D005821 ORTHO05D006649 5.2e-148 528.1 335 75.2
Sabra02G0147600 Salix brachista HOM05D005821 ORTHO05D006649 6.7e-148 527.7 335 75.5
Atru.chr5.549 Acer truncatum HOM05D005821 ORTHO05D006649 1.1e-147 526.9 352 70.5
PGR031G3922 Punica granatum HOM05D005821 ORTHO05D006649 4.4e-147 525.0 319 76.2
Cc02_g38430 Coffea canephora HOM05D005821 ORTHO05D006649 9.7e-147 523.9 333 73.3
MD01G1069600 Malus domestica HOM05D005821 ORTHO05D006649 2.2e-146 522.7 353 70.8
Glyma.09G254500 Glycine max HOM05D005821 ORTHO05D006649 8.2e-146 520.8 347 70.0
Lsat_1_v5_gn_3_138360 Lactuca sativa HOM05D005821 ORTHO05D006649 8.2e-146 520.8 351 70.4
MBI11_g09064_MAGBIO Magnolia biondii HOM05D005821 ORTHO05D006649 1.4e-145 520.0 349 71.3
TPR.G35791 Trifolium pratense HOM05D005821 ORTHO05D006649 3.1e-145 518.8 347 70.3
Ca_07943_v3 Cicer arietinum L. HOM05D006382 ORTHO05D008938 7.0e-145 517.7 320 75.0
Glyma.18G238500 Glycine max HOM05D005821 ORTHO05D006649 7.0e-145 517.7 348 69.8
Lalb_Chr17g0339001 Lupinus albus HOM05D005821 ORTHO05D006649 7.0e-145 517.7 333 76.3
CiPaw.01G065500 Carya illinoinensis HOM05D005821 ORTHO05D006649 1.2e-144 516.9 344 70.9
Manes.01G253300 Manihot esculenta HOM05D005821 ORTHO05D006649 1.2e-144 516.9 352 69.9
PSO782G2463 Papaver somniferum HOM05D005821 ORTHO05D006649 1.2e-144 516.9 317 74.1
QL04p055074 Quercus lobata HOM05D005821 ORTHO05D006649 1.2e-144 516.9 357 70.3
GSVIVG01027007001 Vitis vinifera HOM05D005821 ORTHO05D006649 2.0e-144 516.2 331 72.8
Rhsim07G0011400 Rhododendron simsii HOM05D005821 ORTHO05D006649 2.6e-144 515.8 363 69.4
Psat3g105200 Pisum sativum HOM05D005821 ORTHO05D006649 4.5e-144 515.0 321 74.1
CANSAT56G3247 Cannabis sativa HOM05D005821 ORTHO05D006649 5.9e-144 514.6 356 70.8
Medtr7g079020 Medicago truncatula HOM05D005821 ORTHO05D006649 5.9e-144 514.6 342 70.2
DCAR_008630 Daucus carota HOM05D005821 ORTHO05D006649 2.2e-143 512.7 352 69.0
SGA_v2.0_scaffold4G02290 Striga asiatica HOM05D005821 ORTHO05D006649 2.2e-143 512.7 356 68.8
HanXRQChr06g0167001 Helianthus annuus HOM05D005821 ORTHO05D006649 2.9e-143 512.3 354 68.9
Ciclev10020792m.g Citrus clementina HOM05D005821 ORTHO05D006649 3.8e-143 511.9 333 73.3
ECA240G2396 Erigeron canadensis HOM05D005821 ORTHO05D006649 3.8e-143 511.9 334 71.3
Thecc.01G354000 Theobroma cacao HOM05D005821 ORTHO05D006649 3.8e-143 511.9 346 69.9
CSS0033562 Camellia sinensis var. sinensis HOM05D005821 ORTHO05D006649 5.0e-143 511.5 355 70.7
CARHR141350 Cardamine hirsuta HOM05D005821 ORTHO05D006649 5.0e-143 511.5 317 73.8
Eucgr.D02318 Eucalyptus grandis HOM05D005821 ORTHO05D006649 8.5e-143 510.8 322 73.0
Cpa.g.sc184.24 Carica papaya HOM05D005821 ORTHO05D006649 1.5e-142 510.0 340 71.5
MSTRG.20856 Avicennia marina HOM05D005821 ORTHO05D006649 1.9e-142 509.6 344 70.1
Peaxi162Scf00020g01233 Petunia axillaris HOM05D005821 ORTHO05D006649 1.9e-142 509.6 352 68.8
AL4G45320 Arabidopsis lyrata HOM05D005821 ORTHO05D006649 3.2e-142 508.8 319 73.4
Gohir.D08G153700 Gossypium hirsutum HOM05D005821 ORTHO05D006649 3.2e-142 508.8 323 72.8
Sp4g28150 Schrenkiella parvula HOM05D005821 ORTHO05D006649 5.5e-142 508.1 317 72.9
Solyc01g095010.4 Solanum lycopersicum HOM05D005821 ORTHO05D006649 5.5e-142 508.1 352 68.8
Gohir.A08G132300 Gossypium hirsutum HOM05D005821 ORTHO05D006649 7.2e-142 507.7 323 72.8
Nitab4.5_0000915g0180 Nicotiana tabacum HOM05D005821 ORTHO05D006649 7.2e-142 507.7 353 68.8
Nitab4.5_0010703g0020 Nicotiana tabacum HOM05D005821 ORTHO05D006649 2.1e-141 506.1 353 68.3
Sopen01g038790 Solanum pennellii HOM05D005821 ORTHO05D006649 2.7e-141 505.8 323 73.1
AUR62022607 Chenopodium quinoa HOM05D005821 ORTHO05D006649 3.6e-141 505.4 351 68.4
Gorai.004G159600 Gossypium raimondii HOM05D005821 ORTHO05D006649 3.6e-141 505.4 323 72.8
AT2G46090 Arabidopsis thaliana HOM05D005821 ORTHO05D006649 4.7e-141 505.0 317 73.8
A05p06050 Brassica napus HOM05D005821 ORTHO05D006649 4.7e-141 505.0 317 73.2
Thhalv10001507m.g Eutrema salsugineum HOM05D005821 ORTHO05D006649 8.0e-141 504.2 317 72.6
Carub.0004s2879 Capsella rubella HOM05D005821 ORTHO05D006649 1.4e-140 503.4 350 68.9
PGSC0003DMG400000188 Solanum tuberosum HOM05D005821 ORTHO05D006649 1.4e-140 503.4 323 72.4
SalBow3G0996 Salvia bowleyana HOM05D005821 ORTHO05D006649 1.2e-139 500.4 379 64.4
Ah.05g180240 Amaranthus hybridus HOM05D005821 ORTHO05D006649 2.0e-139 499.6 354 68.6
ATR0661G113 Amborella trichopoda HOM05D005821 ORTHO05D006649 4.4e-139 498.4 360 68.1
arahy.Tifrunner.gnm1.ann1.WE10J5 Arachis hypogaea HOM05D005821 ORTHO05D006649 5.7e-139 498.0 330 70.9
vmacro13240 Vaccinium macrocarpon HOM05D005821 ORTHO05D006649 1.3e-138 496.9 376 66.0
arahy.Tifrunner.gnm1.ann1.01GDC8 Arachis hypogaea HOM05D005821 ORTHO05D006649 1.7e-138 496.5 330 70.9
FAN01G0645 Fragaria x ananassa HOM05D005821 ORTHO05D006649 2.2e-138 496.1 346 70.8
THA.LOC104817314 Tarenaya hassleriana HOM05D005821 ORTHO05D006649 3.7e-138 495.4 347 67.7
BraA05t19569Z Brassica rapa HOM05D005821 ORTHO05D006649 1.1e-137 493.8 307 74.3
Hund16670 Selenicereus undatus HOM05D005821 ORTHO05D006649 7.7e-136 487.6 315 73.7
A04p34280 Brassica napus HOM05D005821 ORTHO05D006649 1.1e-134 483.8 335 68.4
C04p72100 Brassica napus HOM05D005821 ORTHO05D006649 2.5e-134 482.6 333 68.8
AUR62004401 Chenopodium quinoa HOM05D005821 ORTHO05D006649 5.5e-134 481.5 338 68.3
BolC4t22319H Brassica oleracea HOM05D005821 ORTHO05D006649 7.2e-134 481.1 321 71.0
EL10Ac1g00367 Beta vulgaris HOM05D005821 ORTHO05D006649 2.6e-131 472.6 412 58.0
Zm00001eb001870 Zea mays HOM05D005821 ORTHO05D006649 3.4e-131 472.2 321 66.4
MELO3C021184.2 Cucumis melo HOM05D005821 ORTHO05D006649 8.3e-130 467.6 309 69.3
C04p06980 Brassica napus HOM05D005821 ORTHO05D006649 7.0e-129 464.5 354 64.4
CDE06G2338 Ceratophyllum demersum HOM05D005821 ORTHO05D006649 4.2e-126 455.3 347 63.4
Os03g0125400 Oryza sativa ssp. japonica HOM05D005821 ORTHO05D006649 1.6e-125 453.4 322 64.3
HPP92_025636 Vanilla planifolia HOM05D005821 ORTHO05D006649 1.6e-125 453.4 318 65.7
Sc23g0002630 Simmondsia chinensis HOM05D005821 ORTHO05D006649 2.1e-125 453.0 318 68.6
Aa31LG1G27510 Aethionema arabicum HOM05D005821 ORTHO05D006649 2.8e-125 452.6 352 64.2
BraA04t18889Z Brassica rapa HOM05D005821 ORTHO05D006649 4.7e-125 451.8 312 68.3
SEGI_25270 Sequoiadendron giganteum HOM05D005821 ORTHO05D006649 1.5e-123 446.8 321 65.1
SGA_v2.0_scaffold95G28815 Striga asiatica HOM05D005821 ORTHO05D006649 3.4e-123 445.7 357 62.5
CAN.G78.118 Capsicum annuum HOM05D005821 ORTHO05D006649 7.0e-121 438.0 278 73.0
Oeu015222.1 Olea europaea HOM05D005821 ORTHO05D006649 3.8e-119 432.2 352 60.5
Mapoly0047s0043 Marchantia polymorpha HOM05D005821 ORTHO05D006649 3.7e-114 415.6 322 60.2
Hma1.2p1_2961F.1_g330850 Hydrangea macrophylla HOM05D005821 ORTHO05D006649 2.0e-112 409.8 346 61.0
unitig_749.g14344 Utricularia gibba HOM05D004707 ORTHO05D006649 5.9e-112 408.3 292 64.4
COL.COLO4_12763 Corchorus olitorius HOM05D005821 ORTHO05D006649 2.8e-109 399.4 305 65.9
Duzib138G1618 Durio zibethinus HOM05D005821 ORTHO05D006649 2.0e-104 383.3 336 58.0
SEGI_00842 Sequoiadendron giganteum HOM05D005821 ORTHO05D006649 5.8e-99 365.2 264 65.5
Actinidia20151 Actinidia chinensis HOM05D005821 ORTHO05D006649 1.9e-97 360.1 216 77.8
Pp3c4_15190 Physcomitrium patens HOM05D005821 ORTHO05D006649 4.4e-91 339.0 295 55.9
CsaV3_7G024010 Cucumis sativus L. HOM05D005821 ORTHO05D006649 2.4e-89 333.2 221 70.6
SGA_v2.0_scaffold95G28808 Striga asiatica HOM05D005821 ORTHO05D006649 8.1e-77 291.6 238 60.1
BolC4t28619H Brassica oleracea HOM05D005821 ORTHO05D005091 9.3e-73 278.1 214 64.5
Pp3c3_23640 Physcomitrium patens HOM05D005821 ORTHO05D006649 4.9e-66 255.8 213 59.2
arahy.Tifrunner.gnm1.ann1.88DVKJ Arachis hypogaea HOM05D005821 ORTHO05D006649 2.8e-61 240.0 185 62.2
TAR374G0886 Trochodendron aralioides HOM05D005821 ORTHO05D006649 5.3e-52 209.1 145 70.3
CsaV3_7G023670 Cucumis sativus L. HOM05D005821 ORTHO05D006649 9.0e-52 208.4 184 55.4
AagrBONN_evm.TU.Sc2ySwM_228.2927 Anthoceros agrestis HOM05D005821 ORTHO05D006649 2.0e-51 207.2 158 58.9
CsaV3_UNG070590 Cucumis sativus L. HOM05D005821 ORTHO05D006649 1.3e-45 188.0 118 71.2
CsaV3_UNG139080 Cucumis sativus L. HOM05D005821 ORTHO05D006649 1.7e-45 187.6 118 72.0
CsaV3_3G018770 Cucumis sativus L. HOM05D005821 ORTHO05D006649 2.8e-45 186.8 119 70.6
MSTRG.28231 Avicennia marina HOM05D005821 ORTHO05D006649 7.9e-40 168.7 111 71.2
SMO011G0016 Selaginella moellendorffii HOM05D005821 ORTHO05D006649 1.3e-34 151.4 131 55.0
PSO349G0068 Papaver somniferum HOM05D000127 ORTHO05D006649 3.2e-33 146.7 96 65.6
PRCOL_00004349 Prasinoderma coloniale HOM05D005821 ORTHO05D006649 5.5e-33 146.0 382 27.5
CsaV3_UNG069570 Cucumis sativus L. HOM05D005821 ORTHO05D006649 5.2e-31 139.4 92 70.7
DCAR_023664 Daucus carota HOM05D000415 ORTHO05D006649 3.1e-28 130.2 196 40.3
BcaC07g41755 Brassica carinata HOM05D001218 ORTHO05D003142 5.5e-25 119.4 75 70.7
SGA_v2.0_scaffold399G50806 Striga asiatica HOM05D005821 ORTHO05D006649 7.5e-22 109.0 66 75.8
Pp3s32_330 Physcomitrium patens HOM05D005216 ORTHO05D006453 2.4e-20 104.0 327 27.2
CsaV3_UNG082640 Cucumis sativus L. HOM05D005821 ORTHO05D006649 7.0e-20 102.4 67 67.2
Gorai.004G111600 Gossypium raimondii HOM05D005821 ORTHO05D029888 2.0e-19 100.9 78 62.8
C04p71120 Brassica napus HOM05D000113 ORTHO05D001353 3.6e-16 90.1 63 68.3
CAN.G517.26 Capsicum annuum HOM05D005821 ORTHO05D006649 1.7e-10 71.2 53 54.7
Pp3c2_22010 Physcomitrium patens HOM05D004444 ORTHO05D005246 2.9e-10 70.5 185 29.2
CsaV3_UNG040220 Cucumis sativus L. HOM05D005821 ORTHO05D006649 3.8e-10 70.1 56 57.1
CsaV3_4G038020 Cucumis sativus L. HOM05D005821 ORTHO05D006649 5.0e-10 69.7 48 64.6
MBI14_g39032_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 2.5e-09 67.4 75 52.0
Thecc.03G089300 Theobroma cacao HOM05D005821 ORTHO05D006649 3.3e-09 67.0 40 75.0
SGA_v2.0_scaffold63G21843 Striga asiatica HOM05D002903 ORTHO05D003066 5.5e-09 66.2 46 65.2
SEGI_02431 Sequoiadendron giganteum HOM05D004444 ORTHO05D005246 1.6e-08 64.7 194 24.2
arahy.Tifrunner.gnm1.ann1.YND711 Arachis hypogaea HOM05D004176 ORTHO05D004845 2.1e-08 64.3 280 26.4
Pp3c1_15060 Physcomitrium patens HOM05D004444 ORTHO05D005246 4.7e-08 63.2 169 28.4
arahy.Tifrunner.gnm1.ann1.IP4RNA Arachis hypogaea HOM05D004176 ORTHO05D004845 2.3e-07 60.8 206 28.6
CsaV3_2G000040 Cucumis sativus L. HOM05D001245 ORTHO05D004475 8.9e-07 58.9 30 76.7
Mapoly0139s0005 Marchantia polymorpha HOM05D004176 ORTHO05D004845 2.0e-06 57.8 178 27.5
BcaC05g29489 Brassica carinata HOM05D005821 ORTHO05D006649 5.7e-06 56.2 32 75.0
Ca_00256_v3 Cicer arietinum L. HOM05D004176 ORTHO05D004845 5.7e-06 56.2 263 25.9
MCO01G720 Micromonas commoda HOM05D004176 ORTHO05D004845 7.5e-06 55.8 322 22.0
Dinv15321 Davidia involucrata HOM05D005821 ORTHO05D006649 9.8e-06 55.5 50 48.0


User provided reference genes

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