Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy7G00243 Aquilegia oxysepala HOM05D002831 ORTHO05D004341 6.2e-104 380.9 213 100.0
TAR374G0609 Trochodendron aralioides HOM05D002831 ORTHO05D004341 4.3e-65 251.9 211 71.6
Dinv28390 Davidia involucrata HOM05D002831 ORTHO05D004341 2.3e-58 229.6 209 64.6
Dinv35249 Davidia involucrata HOM05D002831 ORTHO05D004341 1.7e-56 223.4 205 65.4
Actinidia34155 Actinidia chinensis HOM05D002831 ORTHO05D004341 7.7e-54 214.5 202 65.3
Cpa.g.sc107.104 Carica papaya HOM05D002831 ORTHO05D004341 1.7e-53 213.4 212 60.8
TWI23G0387 Tripterygium wilfordii HOM05D002831 ORTHO05D004341 1.2e-51 207.2 212 56.1
Atru.chr1.379 Acer truncatum HOM05D002831 ORTHO05D004341 5.2e-50 201.8 213 60.1
Atru.ctg97_1.16 Acer truncatum HOM05D002831 ORTHO05D004341 5.2e-50 201.8 213 60.1
CSS0004722 Camellia sinensis var. sinensis HOM05D002831 ORTHO05D004341 1.5e-49 200.3 209 56.5
CSS0021117 Camellia sinensis var. sinensis HOM05D002831 ORTHO05D004341 1.5e-49 200.3 209 56.5
TAR375G0840 Trochodendron aralioides HOM05D002831 ORTHO05D004341 2.0e-49 199.9 212 59.0
Actinidia08576 Actinidia chinensis HOM05D002831 ORTHO05D004341 2.6e-49 199.5 202 62.9
Sabra04G0053100 Salix brachista HOM05D002831 ORTHO05D004341 9.7e-49 197.6 212 60.8
CSS0012099 Camellia sinensis var. sinensis HOM05D002831 ORTHO05D004341 1.7e-48 196.8 209 57.4
CSS0034926 Camellia sinensis var. sinensis HOM05D002831 ORTHO05D004341 1.7e-48 196.8 209 57.4
Duzib084G1013 Durio zibethinus HOM05D002831 ORTHO05D004341 2.2e-48 196.4 212 59.4
Ciclev10005857m.g Citrus clementina HOM05D002831 ORTHO05D004341 3.7e-48 195.7 212 58.5
Lj1P1004T73 Lonicera japonica HOM05D002831 ORTHO05D004341 3.7e-48 195.7 201 58.7
COL.COLO4_10060 Corchorus olitorius HOM05D002831 ORTHO05D004341 6.3e-48 194.9 213 59.2
Thecc.03G183700 Theobroma cacao HOM05D002831 ORTHO05D004341 6.3e-48 194.9 212 59.4
PSO478G4817 Papaver somniferum HOM05D002831 ORTHO05D004341 1.8e-47 193.4 213 56.3
TWI14G0525 Tripterygium wilfordii HOM05D002831 ORTHO05D004341 7.0e-47 191.4 214 58.4
Peaxi162Scf00444g00016 Petunia axillaris HOM05D002831 ORTHO05D004341 9.1e-47 191.0 211 58.8
Potri.004G079900 Populus trichocarpa HOM05D002831 ORTHO05D004341 2.7e-46 189.5 212 59.4
Potri.017G143215 Populus trichocarpa HOM05D002831 ORTHO05D004341 3.5e-46 189.1 214 59.3
Cc02_g02420 Coffea canephora HOM05D002831 ORTHO05D004341 5.9e-46 188.3 200 60.0
PSO782G2858 Papaver somniferum HOM05D002831 ORTHO05D004341 5.9e-46 188.3 207 57.5
Duzib068G1050 Durio zibethinus HOM05D002831 ORTHO05D004341 5.0e-45 185.3 212 58.0
Nitab4.5_0000084g0400 Nicotiana tabacum HOM05D002831 ORTHO05D004341 8.5e-45 184.5 211 56.9
TWI39G0102 Tripterygium wilfordii HOM05D002831 ORTHO05D004341 1.5e-44 183.7 213 54.0
Nitab4.5_0000572g0140 Nicotiana tabacum HOM05D002831 ORTHO05D004341 3.2e-44 182.6 211 56.4
Rhsim09G0200400 Rhododendron simsii HOM05D002831 ORTHO05D004341 7.2e-44 181.4 209 56.9
Duzib205G1365 Durio zibethinus HOM05D002831 ORTHO05D004341 1.2e-43 180.6 211 57.8
Rhsim03G0190700 Rhododendron simsii HOM05D002831 ORTHO05D004341 4.7e-43 178.7 193 60.1
Sabra17G0120100 Salix brachista HOM05D002831 ORTHO05D004341 6.1e-43 178.3 212 57.5
PGR042G3073 Punica granatum HOM05D002831 ORTHO05D004341 1.4e-42 177.2 212 55.7
AUR62021127 Chenopodium quinoa HOM05D002831 ORTHO05D004341 1.8e-42 176.8 205 51.7
SalBow4G1512 Salvia bowleyana HOM05D002831 ORTHO05D004341 1.8e-42 176.8 201 57.2
AUR62031417 Chenopodium quinoa HOM05D002831 ORTHO05D004341 3.0e-42 176.0 205 51.7
Oeu036905.1 Olea europaea HOM05D002831 ORTHO05D004341 5.2e-42 175.3 205 56.1
Peaxi162Scf00618g00748 Petunia axillaris HOM05D001680 ORTHO05D004341 6.8e-42 174.9 202 56.4
CAN.G126.12 Capsicum annuum HOM05D002831 ORTHO05D004341 8.8e-42 174.5 212 54.2
Gohir.D12G256900 Gossypium hirsutum HOM05D002831 ORTHO05D004341 8.8e-42 174.5 213 55.4
Gorai.008G275100 Gossypium raimondii HOM05D002831 ORTHO05D004341 8.8e-42 174.5 213 55.4
vmacro06629 Vaccinium macrocarpon HOM05D002831 ORTHO05D004341 8.8e-42 174.5 193 59.6
Manes.14G023000 Manihot esculenta HOM05D002831 ORTHO05D004341 2.0e-41 173.3 214 55.1
Gohir.A12G255500 Gossypium hirsutum HOM05D002831 ORTHO05D004341 2.6e-41 172.9 213 54.9
DCAR_020268 Daucus carota HOM05D002831 ORTHO05D004341 3.4e-41 172.6 200 48.0
CiPaw.06G003300 Carya illinoinensis HOM05D002831 ORTHO05D004341 4.4e-41 172.2 212 54.7
DCAR_009393 Daucus carota HOM05D002831 ORTHO05D004341 4.4e-41 172.2 199 53.8
Nitab4.5_0003825g0080 Nicotiana tabacum HOM05D002831 ORTHO05D004341 4.4e-41 172.2 208 55.8
Eucgr.A02748 Eucalyptus grandis HOM05D002831 ORTHO05D004341 5.7e-41 171.8 203 55.2
Sopen06g012030 Solanum pennellii HOM05D002831 ORTHO05D004341 5.7e-41 171.8 202 56.9
Actinidia31838 Actinidia chinensis HOM05D002831 ORTHO05D004341 7.5e-41 171.4 213 57.3
EL10Ac3g05428 Beta vulgaris HOM05D002831 ORTHO05D004341 7.5e-41 171.4 198 58.1
CiPaw.06G003100 Carya illinoinensis HOM05D002831 ORTHO05D004341 9.8e-41 171.0 212 54.2
Oeu060465.1 Olea europaea HOM05D002831 ORTHO05D004341 9.8e-41 171.0 201 50.7
Sopen03g003930 Solanum pennellii HOM05D002831 ORTHO05D004341 9.8e-41 171.0 209 54.1
Gorai.006G199200 Gossypium raimondii HOM05D002831 ORTHO05D004341 1.3e-40 170.6 216 53.2
Gohir.D09G177200 Gossypium hirsutum HOM05D002831 ORTHO05D004341 2.2e-40 169.9 216 53.2
Hma1.2p1_0274F.1_g110180 Hydrangea macrophylla HOM05D002831 ORTHO05D004341 2.2e-40 169.9 211 55.9
PGSC0003DMG400028898 Solanum tuberosum HOM05D002831 ORTHO05D004341 4.8e-40 168.7 202 55.9
Cfa016283 Carpinus fangiana HOM05D002831 ORTHO05D004341 6.3e-40 168.3 211 55.0
QL09p012962 Quercus lobata HOM05D002831 ORTHO05D004341 1.1e-39 167.5 217 53.9
PGSC0003DMG400010167 Solanum tuberosum HOM05D002831 ORTHO05D004341 1.2e-38 164.1 198 54.0
Oeu045362.1 Olea europaea HOM05D002831 ORTHO05D004341 1.6e-38 163.7 211 55.0
Gohir.A09G182600 Gossypium hirsutum HOM05D002831 ORTHO05D004341 1.3e-37 160.6 207 54.6
Manes.06G152100 Manihot esculenta HOM05D002831 ORTHO05D004341 1.3e-37 160.6 211 52.6
MSTRG.27090 Avicennia marina HOM05D002831 ORTHO05D004341 1.5e-36 157.1 200 54.5
Prupe.2G300400 Prunus persica HOM05D002831 ORTHO05D004341 2.5e-36 156.4 214 50.5
MSTRG.74 Avicennia marina HOM05D002831 ORTHO05D004341 1.2e-35 154.1 209 52.2
Glyma.09G132500 Glycine max HOM05D002831 ORTHO05D004341 1.2e-35 154.1 205 55.1
Phvul.004G109000 Phaseolus vulgaris HOM05D002831 ORTHO05D004341 4.7e-35 152.1 204 52.0
THA.LOC104800271 Tarenaya hassleriana HOM05D002831 ORTHO05D004341 6.1e-35 151.8 195 49.7
VMungo0464G0591 Vigna mungo HOM05D002831 ORTHO05D004341 1.4e-34 150.6 204 52.0
Glyma.16G179300 Glycine max HOM05D002831 ORTHO05D004341 1.8e-34 150.2 207 52.2
MD07G1278500 Malus domestica HOM05D002831 ORTHO05D004341 1.8e-34 150.2 215 50.2
CANSAT11G0421 Cannabis sativa HOM05D002831 ORTHO05D004341 2.3e-34 149.8 215 49.3
Ah.07g206590 Amaranthus hybridus HOM05D002831 ORTHO05D004341 4.0e-34 149.1 200 50.5
Lalb_Chr02g0141231 Lupinus albus HOM05D002831 ORTHO05D004341 6.8e-34 148.3 202 55.9
Haze_00039 Corylus avellana HOM05D002831 ORTHO05D004341 8.8e-34 147.9 145 56.6
MBI11_g04751_MAGBIO Magnolia biondii HOM05D002831 ORTHO05D004341 8.8e-34 147.9 221 52.9
SGA_v2.0_scaffold113G31691 Striga asiatica HOM05D002831 ORTHO05D008967 2.0e-33 146.7 208 52.4
CiPaw.12G018300 Carya illinoinensis HOM05D002831 ORTHO05D004341 2.6e-33 146.4 185 53.5
Solyc06g036250.2 Solanum lycopersicum HOM05D002831 ORTHO05D004341 5.7e-33 145.2 185 54.1
Gohir.A08G098200 Gossypium hirsutum HOM05D002831 ORTHO05D004341 7.5e-33 144.8 200 54.5
CARHR233110 Cardamine hirsuta HOM05D002831 ORTHO05D004341 9.8e-33 144.4 212 46.2
Gorai.004G117400 Gossypium raimondii HOM05D002831 ORTHO05D004341 9.8e-33 144.4 200 54.0
ATR0661G020 Amborella trichopoda HOM05D002831 ORTHO05D004341 1.7e-32 143.7 224 46.4
Nitab4.5_0000248g0010 Nicotiana tabacum HOM05D002831 ORTHO05D004341 2.8e-32 142.9 185 55.1
GSVIVG01028866001 Vitis vinifera HOM05D002831 ORTHO05D010484 2.8e-32 142.9 212 50.9
arahy.Tifrunner.gnm1.ann1.VWVY78 Arachis hypogaea HOM05D002831 ORTHO05D010484 3.7e-32 142.5 210 51.9
Carub.0007s1530 Capsella rubella HOM05D002831 ORTHO05D004341 4.9e-32 142.1 212 45.3
Gohir.D08G109800 Gossypium hirsutum HOM05D002831 ORTHO05D004341 4.9e-32 142.1 200 53.5
Ah.13g069150 Amaranthus hybridus HOM05D002831 ORTHO05D004341 8.3e-32 141.4 205 47.8
Sp7g23710 Schrenkiella parvula HOM05D002831 ORTHO05D004341 1.4e-31 140.6 212 45.8
Thhalv10027473m.g Eutrema salsugineum HOM05D002831 ORTHO05D004341 1.8e-31 140.2 212 44.8
AL7G27410 Arabidopsis lyrata HOM05D002831 ORTHO05D004341 2.4e-31 139.8 212 45.3
Gohir.A11G011900 Gossypium hirsutum HOM05D002831 ORTHO05D004341 2.4e-31 139.8 213 51.2
Gorai.007G012600 Gossypium raimondii HOM05D002831 ORTHO05D004341 4.1e-31 139.0 213 50.7
FAN03G0781 Fragaria x ananassa HOM05D002831 ORTHO05D004341 7.0e-31 138.3 215 47.9
MD01G1207900 Malus domestica HOM05D002831 ORTHO05D004341 1.2e-30 137.5 215 47.4
AL7G27390 Arabidopsis lyrata HOM05D002831 ORTHO05D004341 1.6e-30 137.1 212 44.3
Gohir.D11G011100 Gossypium hirsutum HOM05D002831 ORTHO05D004341 1.6e-30 137.1 213 50.2
FAN01G0089 Fragaria x ananassa HOM05D002831 ORTHO05D004341 2.7e-30 136.3 215 47.4
Hma1.2p1_0327F.1_g126410 Hydrangea macrophylla HOM05D002831 ORTHO05D004341 3.5e-30 136.0 208 46.2
FvH4_7g30190 Fragaria vesca HOM05D002831 ORTHO05D004341 4.5e-30 135.6 215 47.4
FAN03G0359 Fragaria x ananassa HOM05D002831 ORTHO05D004341 4.5e-30 135.6 215 47.4
FAN06G3328 Fragaria x ananassa HOM05D002831 ORTHO05D004341 4.5e-30 135.6 215 47.4
Lalb_Chr03g0034811 Lupinus albus HOM05D002831 ORTHO05D004341 7.7e-30 134.8 204 50.0
RcHm_v2.0_Chr1g0378241 Rosa chinensis HOM05D002831 ORTHO05D004341 1.7e-29 133.7 209 47.8
AT4G25670 Arabidopsis thaliana HOM05D002831 ORTHO05D004341 2.3e-29 133.3 212 46.2
AT4G25690 Arabidopsis thaliana HOM05D002831 ORTHO05D004341 2.9e-29 132.9 210 44.3
BraA01t01645Z Brassica rapa HOM05D002831 ORTHO05D004341 2.9e-29 132.9 213 43.2
AL8G27020 Arabidopsis lyrata HOM05D002831 ORTHO05D004341 6.6e-29 131.7 198 44.9
BraA02t06237Z Brassica rapa HOM05D002831 ORTHO05D004341 8.6e-29 131.3 198 44.4
CAN.G204.16 Capsicum annuum HOM05D002831 ORTHO05D004341 8.6e-29 131.3 190 53.2
THA.LOC104811959 Tarenaya hassleriana HOM05D002831 ORTHO05D004341 8.6e-29 131.3 273 36.6
vmacro09817 Vaccinium macrocarpon HOM05D002831 ORTHO05D004341 8.6e-29 131.3 115 74.8
FAN10G3196 Fragaria x ananassa HOM05D002831 ORTHO05D004341 5.6e-28 128.6 215 46.5
Sc19g0001290 Simmondsia chinensis HOM05D002831 ORTHO05D004341 9.5e-28 127.9 207 47.8
MSTRG.8713 Avicennia marina HOM05D002831 ORTHO05D004341 1.2e-27 127.5 202 46.5
Migut.F00296 Erythranthe guttata HOM05D002831 ORTHO05D004341 1.6e-27 127.1 202 50.5
Thhalv10026278m.g Eutrema salsugineum HOM05D002831 ORTHO05D004341 1.6e-27 127.1 200 42.5
BolC1t02046H Brassica oleracea HOM05D002831 ORTHO05D004341 2.1e-27 126.7 214 42.1
Lj5g0008853 Lotus japonicus HOM05D002831 ORTHO05D004341 2.8e-27 126.3 206 50.0
Aa31LG3G8920 Aethionema arabicum HOM05D002831 ORTHO05D004341 3.6e-27 125.9 196 41.3
BNapus_Darmor_BZH_scaffold_232p00070 Brassica napus HOM05D002831 ORTHO05D004341 3.6e-27 125.9 198 42.9
TPR.G7753 Trifolium pratense HOM05D002831 ORTHO05D004341 1.0e-26 124.4 204 50.0
AT5G52550 Arabidopsis thaliana HOM05D002831 ORTHO05D004341 1.8e-26 123.6 198 42.4
A02p11720 Brassica napus HOM05D002831 ORTHO05D004341 1.8e-26 123.6 200 44.0
Sp7g23730 Schrenkiella parvula HOM05D002831 ORTHO05D004341 1.8e-26 123.6 203 45.8
HPP92_022210 Vanilla planifolia HOM05D002831 ORTHO05D004341 1.8e-26 123.6 200 45.5
Glyma.20G162500 Glycine max HOM05D002831 ORTHO05D004341 2.3e-26 123.2 199 49.2
A01p16930 Brassica napus HOM05D002831 ORTHO05D004341 3.0e-26 122.9 196 41.8
HPP92_022228 Vanilla planifolia HOM05D002831 ORTHO05D004341 8.9e-26 121.3 200 45.0
C01p21210 Brassica napus HOM05D002831 ORTHO05D004341 3.4e-25 119.4 196 41.3
BolC1t02049H Brassica oleracea HOM05D002831 ORTHO05D004341 4.4e-25 119.0 214 49.5
BcaC06g32789 Brassica carinata HOM05D002831 ORTHO05D004341 1.3e-24 117.5 216 41.2
Glyma.10G231300 Glycine max HOM05D002831 ORTHO05D004341 1.7e-24 117.1 199 48.2
unitig_37.g11969 Utricularia gibba HOM05D002831 ORTHO05D004341 1.7e-24 117.1 188 50.0
SGA_v2.0_scaffold10G05296 Striga asiatica HOM05D002831 ORTHO05D004341 2.2e-24 116.7 200 43.0
BcaNung07307 Brassica carinata HOM05D002831 ORTHO05D004341 3.7e-24 115.9 213 41.3
Carub.0008s1268 Capsella rubella HOM05D002831 ORTHO05D004341 3.7e-24 115.9 265 36.6
Migut.F01087 Erythranthe guttata HOM05D002831 ORTHO05D004341 3.7e-24 115.9 188 48.4
SGA_v2.0_scaffold60G21104 Striga asiatica HOM05D002831 ORTHO05D004341 4.9e-24 115.5 204 48.0
CsaV3_3G017430 Cucumis sativus L. HOM05D002831 ORTHO05D004341 8.3e-24 114.8 209 44.5
BraA01t01648Z Brassica rapa HOM05D002831 ORTHO05D004341 1.1e-23 114.4 214 43.9
MELO3C006940.2 Cucumis melo HOM05D002831 ORTHO05D004341 4.1e-23 112.5 209 43.5
Ca_10728_v3 Cicer arietinum L. HOM05D002831 ORTHO05D004341 5.4e-23 112.1 204 46.6
ClCG05G008340 Citrullus lanatus HOM05D002831 ORTHO05D004341 7.0e-23 111.7 209 44.5
HPP92_008924 Vanilla planifolia HOM05D002831 ORTHO05D004341 7.0e-23 111.7 209 43.1
BcaC03g14518 Brassica carinata HOM05D002831 ORTHO05D004341 1.2e-22 110.9 101 58.4
CARHR233150 Cardamine hirsuta HOM05D002831 ORTHO05D004341 1.6e-22 110.5 216 40.3
BcaB05g21966 Brassica carinata HOM05D002831 ORTHO05D004341 2.0e-22 110.2 193 44.0
Psat6g196360 Pisum sativum HOM05D002831 ORTHO05D004341 2.7e-22 109.8 204 46.6
HPP92_022231 Vanilla planifolia HOM05D002831 ORTHO05D004341 2.3e-21 106.7 148 48.6
Lalb_Chr06g0161301 Lupinus albus HOM05D002831 ORTHO05D004341 1.5e-20 104.0 204 44.1
VMungo0720G1018 Vigna mungo HOM05D002831 ORTHO05D004341 9.5e-20 101.3 200 43.5
Lalb_Chr21g0305221 Lupinus albus HOM05D002831 ORTHO05D004341 1.6e-19 100.5 161 49.1
TPR.G21560 Trifolium pratense HOM05D002831 ORTHO05D004341 1.6e-19 100.5 208 46.2
Sabra06G0007800 Salix brachista HOM05D002831 ORTHO05D010484 4.7e-19 99.0 130 43.8
unitig_0.g2470 Utricularia gibba HOM05D002831 ORTHO05D004341 6.2e-19 98.6 201 41.8
Sed0011382 Sechium edule HOM05D002831 ORTHO05D004341 1.4e-18 97.4 200 41.5
FAN10G0429 Fragaria x ananassa HOM05D002831 ORTHO05D004341 5.2e-18 95.5 215 41.4
C07p54490 Brassica napus HOM05D000048 ORTHO05D000445 1.5e-17 94.0 105 59.0
BolC7t45934H Brassica oleracea HOM05D000048 ORTHO05D000445 1.5e-17 94.0 105 59.0
Nn1g08525 Nelumbo nucifera HOM05D002831 ORTHO05D004341 4.4e-17 92.4 142 38.7
SEGI_15574 Sequoiadendron giganteum HOM05D002831 ORTHO05D004341 7.5e-17 91.7 251 37.1
BraA03t14689Z Brassica rapa HOM05D000048 ORTHO05D000445 1.3e-16 90.9 105 64.8
Sed0001656 Sechium edule HOM05D002831 ORTHO05D004341 1.3e-16 90.9 208 39.9
Os02g0104200 Oryza sativa ssp. japonica HOM05D002831 ORTHO05D004341 1.7e-16 90.5 210 40.5
CARHR265540 Cardamine hirsuta HOM05D002831 ORTHO05D004341 2.9e-16 89.7 118 50.0
ECA232G1618 Erigeron canadensis HOM05D002831 ORTHO05D004341 2.4e-15 86.7 222 41.9
Zm00001eb229390 Zea mays HOM05D002831 ORTHO05D004341 2.7e-14 83.2 218 42.2
Medtr1g100090 Medicago truncatula HOM05D002831 ORTHO05D004341 3.9e-13 79.3 131 51.1
Carub.0007s1527 Capsella rubella HOM05D002831 ORTHO05D004341 7.3e-12 75.1 77 63.6
HanXRQChr14g0462531 Helianthus annuus HOM05D002831 ORTHO05D004341 2.3e-10 70.1 227 37.9
Nn1g01625 Nelumbo nucifera HOM05D002831 ORTHO05D004341 1.2e-09 67.8 54 79.6
Lsat_1_v5_gn_2_131301 Lactuca sativa HOM05D002831 ORTHO05D004341 7.5e-09 65.1 203 38.9
Lsat_1_v5_gn_9_56481 Lactuca sativa HOM05D002831 ORTHO05D004341 6.4e-08 62.0 204 36.8
ECA238G2131 Erigeron canadensis HOM05D002831 ORTHO05D004341 1.4e-07 60.8 207 40.1
Os06g0106900 Oryza sativa ssp. japonica HOM05D002831 ORTHO05D004341 1.4e-07 60.8 195 38.5
Lj8C18T8 Lonicera japonica HOM05D002831 ORTHO05D004341 2.4e-07 60.1 202 42.6


User provided reference genes

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