Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy7G00234 Aquilegia oxysepala HOM05D004727 ORTHO05D005788 8.5e-185 650.2 332 100.0
CSS0032352 Camellia sinensis var. sinensis HOM05D004727 ORTHO05D005788 2.1e-114 416.4 299 68.6
Nn1g01641 Nelumbo nucifera HOM05D004727 ORTHO05D005788 2.1e-114 416.4 302 69.2
Prupe.2G301200 Prunus persica HOM05D004727 ORTHO05D005788 3.0e-113 412.5 282 72.3
Cfa016290 Carpinus fangiana HOM05D002238 ORTHO05D007272 5.7e-112 408.3 305 66.9
MD01G1208600 Malus domestica HOM05D004727 ORTHO05D005788 1.3e-111 407.1 287 70.0
Lsat_1_v5_gn_9_56621 Lactuca sativa HOM05D004727 ORTHO05D005788 1.4e-110 403.7 284 68.3
GSVIVG01028857001 Vitis vinifera HOM05D004727 ORTHO05D005788 1.2e-109 400.6 284 70.1
RcHm_v2.0_Chr1g0378381 Rosa chinensis HOM05D004727 ORTHO05D005788 1.5e-109 400.2 305 68.2
PSO478G4818 Papaver somniferum HOM05D004727 ORTHO05D005788 2.6e-109 399.4 312 63.8
Oeu061663.1 Olea europaea HOM05D004727 ORTHO05D005788 3.4e-109 399.1 314 63.7
Eucgr.A02736 Eucalyptus grandis HOM05D004727 ORTHO05D005788 1.3e-108 397.1 316 64.9
vmacro09814 Vaccinium macrocarpon HOM05D004727 ORTHO05D005788 1.7e-108 396.7 305 65.2
Atru.chr1.354 Acer truncatum HOM05D004727 ORTHO05D005788 3.8e-108 395.6 280 69.3
HanXRQChr12g0381081 Helianthus annuus HOM05D004727 ORTHO05D005788 6.5e-108 394.8 282 68.4
Cc02_g02360 Coffea canephora HOM05D004727 ORTHO05D005788 1.1e-107 394.0 293 65.9
ECA232G4896 Erigeron canadensis HOM05D004727 ORTHO05D005788 1.1e-107 394.0 285 66.0
Lalb_Chr03g0034881 Lupinus albus HOM05D004727 ORTHO05D005788 1.4e-107 393.7 311 65.0
Haze_00047 Corylus avellana HOM05D004727 ORTHO05D005788 7.2e-107 391.3 323 62.8
Lalb_Chr19g0130641 Lupinus albus HOM05D004727 ORTHO05D005788 7.2e-107 391.3 281 70.5
Rhsim09G0200700 Rhododendron simsii HOM05D004727 ORTHO05D005788 9.3e-107 391.0 365 58.4
Thecc.03G184500 Theobroma cacao HOM05D004727 ORTHO05D005788 4.6e-106 388.7 312 63.1
FAN03G1377 Fragaria x ananassa HOM05D004727 ORTHO05D005788 6.1e-106 388.3 285 67.4
CsaV3_3G017470 Cucumis sativus L. HOM05D004727 ORTHO05D005788 1.0e-105 387.5 291 67.4
Psat0ss29864g0280 Pisum sativum HOM05D004727 ORTHO05D005788 1.3e-105 387.1 312 64.1
PGR042G1629 Punica granatum HOM05D004727 ORTHO05D005788 1.8e-105 386.7 260 71.2
Gorai.007G013000 Gossypium raimondii HOM05D004727 ORTHO05D005788 3.0e-105 386.0 288 64.9
Actinidia03138 Actinidia chinensis HOM05D004727 ORTHO05D005788 3.9e-105 385.6 263 72.6
FvH4_7g30250 Fragaria vesca HOM05D004727 ORTHO05D005788 3.9e-105 385.6 285 66.0
FAN10G1092 Fragaria x ananassa HOM05D004727 ORTHO05D005788 5.1e-105 385.2 285 67.0
FAN10G3700 Fragaria x ananassa HOM05D004727 ORTHO05D005788 5.1e-105 385.2 285 67.0
Gohir.D11G011600 Gossypium hirsutum HOM05D004727 ORTHO05D005788 6.7e-105 384.8 288 64.6
Manes.06G152500 Manihot esculenta HOM05D004727 ORTHO05D005788 8.7e-105 384.4 308 62.7
Ca_23692_v3 Cicer arietinum L. HOM05D004727 ORTHO05D005788 1.9e-104 383.3 293 65.5
MSTRG.8711 Avicennia marina HOM05D004727 ORTHO05D005788 4.3e-104 382.1 311 60.8
Medtr0057s0080 Medicago truncatula HOM05D004727 ORTHO05D005788 4.3e-104 382.1 282 65.6
Sed0015096 Sechium edule HOM05D004727 ORTHO05D005788 4.3e-104 382.1 323 61.0
TPR.G33517 Trifolium pratense HOM05D004727 ORTHO05D005788 1.7e-103 380.2 282 64.9
Gohir.D08G109400 Gossypium hirsutum HOM05D004727 ORTHO05D005788 2.2e-103 379.8 280 66.1
Gohir.A11G012400 Gossypium hirsutum HOM05D004727 ORTHO05D005788 4.8e-103 378.6 294 63.3
Duzib205G1763 Durio zibethinus HOM05D004727 ORTHO05D005788 6.3e-103 378.3 305 62.0
Glyma.09G131600 Glycine max HOM05D004727 ORTHO05D005788 8.2e-103 377.9 281 67.3
PSO782G5178 Papaver somniferum HOM05D004727 ORTHO05D005788 8.2e-103 377.9 311 61.7
Aa31sc163G30 Aethionema arabicum HOM05D004727 ORTHO05D005788 3.1e-102 375.9 284 64.8
FAN06G4134 Fragaria x ananassa HOM05D004727 ORTHO05D005788 3.1e-102 375.9 299 62.9
Potri.004G073700 Populus trichocarpa HOM05D004727 ORTHO05D005788 3.1e-102 375.9 283 65.4
FAN06G0456 Fragaria x ananassa HOM05D004727 ORTHO05D005788 4.1e-102 375.6 299 62.5
Carub.0007s1524 Capsella rubella HOM05D004727 ORTHO05D005788 9.1e-102 374.4 312 62.2
VMungo0464G1912 Vigna mungo HOM05D004727 ORTHO05D005788 9.1e-102 374.4 282 66.0
COL.COLO4_30213 Corchorus olitorius HOM05D004727 ORTHO05D005788 1.2e-101 374.0 307 60.6
Sc25g0000700 Simmondsia chinensis HOM05D004727 ORTHO05D005788 1.2e-101 374.0 268 67.2
CARHR233170 Cardamine hirsuta HOM05D004727 ORTHO05D005788 1.5e-101 373.6 311 60.8
EL10Ac3g05418 Beta vulgaris HOM05D004727 ORTHO05D005788 2.0e-101 373.2 303 61.4
Migut.F00289 Erythranthe guttata HOM05D004727 ORTHO05D005788 2.0e-101 373.2 272 64.7
C01p21250 Brassica napus HOM05D004727 ORTHO05D005788 5.9e-101 371.7 289 63.7
Gorai.004G117100 Gossypium raimondii HOM05D004727 ORTHO05D005788 5.9e-101 371.7 280 65.0
Lj2g0018940 Lotus japonicus HOM05D004727 ORTHO05D005788 5.9e-101 371.7 282 65.2
Medtr0057s0130 Medicago truncatula HOM05D004727 ORTHO05D005788 5.9e-101 371.7 278 65.5
Phvul.004G107900 Phaseolus vulgaris HOM05D004727 ORTHO05D005788 5.9e-101 371.7 289 65.7
CDE11G0547 Ceratophyllum demersum HOM05D004727 ORTHO05D005788 7.7e-101 371.3 285 64.9
BraA01t01653Z Brassica rapa HOM05D004727 ORTHO05D005788 1.0e-100 370.9 291 62.9
A01p16970 Brassica napus HOM05D004727 ORTHO05D005788 1.3e-100 370.5 291 62.9
Gohir.A08G085600 Gossypium hirsutum HOM05D004727 ORTHO05D005788 2.2e-100 369.8 290 63.4
Thhalv10025771m.g Eutrema salsugineum HOM05D004727 ORTHO05D005788 3.8e-100 369.0 310 61.0
Sopen03g003850 Solanum pennellii HOM05D004727 ORTHO05D005788 3.8e-100 369.0 300 61.3
ATR0661G169 Amborella trichopoda HOM05D004727 ORTHO05D005788 5.0e-100 368.6 310 60.0
AL7G27320 Arabidopsis lyrata HOM05D004727 ORTHO05D005788 5.0e-100 368.6 296 62.5
Glyma.16G178900 Glycine max HOM05D004727 ORTHO05D005788 5.0e-100 368.6 281 65.5
HanXRQChr05g0130171 Helianthus annuus HOM05D004727 ORTHO05D005788 6.5e-100 368.2 250 68.4
BolC1t02052H Brassica oleracea HOM05D004727 ORTHO05D005788 1.1e-99 367.5 291 62.5
CiPaw.05G262100 Carya illinoinensis HOM05D004727 ORTHO05D005788 1.4e-99 367.1 275 66.5
ClCG05G008410 Citrullus lanatus HOM05D004727 ORTHO05D005788 3.2e-99 365.9 335 58.5
Solyc03g007900.3 Solanum lycopersicum HOM05D004727 ORTHO05D005788 3.2e-99 365.9 300 59.7
Potri.017G146200 Populus trichocarpa HOM05D004727 ORTHO05D005788 5.5e-99 365.2 300 60.7
unitig_0.g2469 Utricularia gibba HOM05D004727 ORTHO05D005788 5.5e-99 365.2 263 65.0
Sp7g23750 Schrenkiella parvula HOM05D004727 ORTHO05D005788 2.7e-98 362.8 289 62.6
Glyma.09G131900 Glycine max HOM05D004727 ORTHO05D005788 4.7e-98 362.1 284 64.1
CAN.G126.29 Capsicum annuum HOM05D004727 ORTHO05D005788 2.3e-97 359.8 298 60.4
CANSAT21G0167 Cannabis sativa HOM05D004727 ORTHO05D005788 5.1e-97 358.6 304 61.8
CANSAT21G2173 Cannabis sativa HOM05D004727 ORTHO05D005788 5.1e-97 358.6 304 61.8
MELO3C006936.2 Cucumis melo HOM05D004727 ORTHO05D005788 5.1e-97 358.6 306 61.4
Manes.06G152600 Manihot esculenta HOM05D004727 ORTHO05D005788 5.7e-96 355.1 263 67.7
Sabra04G0048400 Salix brachista HOM05D004727 ORTHO05D005788 5.7e-96 355.1 302 61.9
SalBow4G1885 Salvia bowleyana HOM05D004727 ORTHO05D005788 7.4e-96 354.8 337 54.6
Nitab4.5_0008522g0030 Nicotiana tabacum HOM05D004727 ORTHO05D005788 1.3e-95 354.0 295 59.3
Nitab4.5_0008522g0010 Nicotiana tabacum HOM05D004727 ORTHO05D005788 3.7e-95 352.4 298 59.4
Os06g0103700 Oryza sativa ssp. japonica HOM05D004727 ORTHO05D005788 3.7e-95 352.4 249 65.9
Nitab4.5_0000084g0460 Nicotiana tabacum HOM05D004727 ORTHO05D005788 1.1e-94 350.9 291 59.1
unitig_52.g17730 Utricularia gibba HOM05D004727 ORTHO05D005788 1.1e-94 350.9 259 64.9
HPP92_025470 Vanilla planifolia HOM05D004727 ORTHO05D005788 1.4e-94 350.5 268 63.8
Glyma.09G131800 Glycine max HOM05D004727 ORTHO05D005788 1.8e-94 350.1 280 63.9
Phvul.004G108600 Phaseolus vulgaris HOM05D004727 ORTHO05D005788 2.4e-94 349.7 280 61.1
Hund11719 Selenicereus undatus HOM05D004727 ORTHO05D005788 5.3e-94 348.6 282 61.0
VMungo0464G2071 Vigna mungo HOM05D004727 ORTHO05D005788 2.0e-93 346.7 281 61.6
CAN.G126.24 Capsicum annuum HOM05D004727 ORTHO05D005788 1.0e-92 344.4 283 60.8
Peaxi162Scf00444g00244 Petunia axillaris HOM05D004727 ORTHO05D005788 1.3e-92 344.0 313 56.9
Hund04788 Selenicereus undatus HOM05D004727 ORTHO05D005788 1.3e-92 344.0 288 56.2
Ah.06g181400 Amaranthus hybridus HOM05D004727 ORTHO05D005788 6.5e-92 341.7 284 58.1
Dinv35254 Davidia involucrata HOM05D004727 ORTHO05D005788 3.2e-91 339.3 199 80.9
Nitab4.5_0000084g0450 Nicotiana tabacum HOM05D004727 ORTHO05D005788 7.2e-91 338.2 348 52.6
Solyc03g007920.4 Solanum lycopersicum HOM05D004727 ORTHO05D005788 4.7e-90 335.5 263 62.0
Duzib068G1006 Durio zibethinus HOM05D004727 ORTHO05D005788 6.1e-90 335.1 273 59.7
SGA_v2.0_scaffold60G21112 Striga asiatica HOM05D004727 ORTHO05D005788 6.1e-90 335.1 335 53.1
AUR62021119 Chenopodium quinoa HOM05D004727 ORTHO05D005788 1.0e-89 334.3 284 59.5
PGSC0003DMG400009500 Solanum tuberosum HOM05D004727 ORTHO05D005788 2.3e-89 333.2 284 58.5
Sopen03g003870 Solanum pennellii HOM05D004727 ORTHO05D005788 3.0e-89 332.8 263 61.6
Cpa.g.sc107.111 Carica papaya HOM05D004727 ORTHO05D005788 5.2e-89 332.0 324 56.8
AT4G25720 Arabidopsis thaliana HOM05D004727 ORTHO05D005788 8.8e-89 331.3 285 59.6
arahy.Tifrunner.gnm1.ann1.G1I5XM Arachis hypogaea HOM05D004727 ORTHO05D005788 1.1e-88 330.9 282 61.0
Lalb_Chr19g0130651 Lupinus albus HOM05D004727 ORTHO05D005788 5.7e-88 328.6 258 62.4
AUR62031423 Chenopodium quinoa HOM05D004727 ORTHO05D005788 2.0e-85 320.1 284 56.3
HPP92_025401 Vanilla planifolia HOM05D004727 ORTHO05D005788 3.5e-85 319.3 225 67.1
SEGI_23205 Sequoiadendron giganteum HOM05D004727 ORTHO05D005788 1.3e-84 317.4 302 54.3
EL10Ac4g07582 Beta vulgaris HOM05D004727 ORTHO05D005788 2.9e-84 316.2 372 46.2
arahy.Tifrunner.gnm1.ann1.NE53A1 Arachis hypogaea HOM05D004727 ORTHO05D005788 5.9e-77 292.0 282 57.8
AUR62036451 Chenopodium quinoa HOM05D004727 ORTHO05D005788 5.5e-75 285.4 238 57.1
Mapoly0062s0028 Marchantia polymorpha HOM05D004727 ORTHO05D005788 8.0e-74 281.6 238 56.3
Pp3c10_5500 Physcomitrium patens HOM05D004727 ORTHO05D005788 6.8e-73 278.5 268 52.6
MSTRG.27085 Avicennia marina HOM05D004727 ORTHO05D005788 5.7e-72 275.4 191 67.0
AUR62017096 Chenopodium quinoa HOM05D004727 ORTHO05D005788 1.3e-68 264.2 215 58.6
Ciclev10005858m.g Citrus clementina HOM05D004727 ORTHO05D005788 2.3e-68 263.5 186 69.9
SMO351G0007 Selaginella moellendorffii HOM05D004727 ORTHO05D005788 4.2e-67 259.2 285 49.1
MBI12_g08716_MAGBIO Magnolia biondii HOM05D004727 ORTHO05D005788 7.2e-67 258.5 196 65.3
CBR_g727 Chara braunii HOM05D004727 ORTHO05D005788 8.0e-66 255.0 233 53.2
FAN03G2629 Fragaria x ananassa HOM05D004727 ORTHO05D005788 3.0e-65 253.1 214 60.7
CBR_g3311 Chara braunii HOM05D004727 ORTHO05D005788 7.5e-64 248.4 233 50.2
CBR_g3313 Chara braunii HOM05D004727 ORTHO05D005788 7.5e-64 248.4 233 50.2
Zm00001eb268480 Zea mays HOM05D004727 ORTHO05D005788 7.8e-61 238.4 168 67.3
QL09p012782 Quercus lobata HOM05D004727 ORTHO05D005788 5.0e-60 235.7 159 70.4
Peaxi162Scf00444g00021 Petunia axillaris HOM05D004727 ORTHO05D005788 7.3e-59 231.9 213 57.7
Actinidia31840 Actinidia chinensis HOM05D004727 ORTHO05D005788 1.8e-57 227.3 141 72.3
AUR62036407 Chenopodium quinoa HOM05D004727 ORTHO05D005788 3.5e-53 213.0 213 51.2
Cre11.g476150 Chlamydomonas reinhardtii HOM05D004727 ORTHO05D005788 1.1e-51 208.0 288 38.5
Ah.13g069160 Amaranthus hybridus HOM05D004727 ORTHO05D005788 1.9e-51 207.2 161 62.7
DCAR_024607 Daucus carota HOM05D004727 ORTHO05D005788 2.1e-50 203.8 161 60.9
SMO231G0015 Selaginella moellendorffii HOM05D004727 ORTHO05D005788 3.4e-48 196.4 193 52.3
MCO01G501 Micromonas commoda HOM05D004727 ORTHO05D005788 3.5e-45 186.4 247 38.9
DCAR_008880 Daucus carota HOM05D001628 ORTHO05D001568 1.1e-41 174.9 116 69.0
PRCOL_00002776 Prasinoderma coloniale HOM05D004727 ORTHO05D005788 1.1e-38 164.9 309 35.3
Actinidia31841 Actinidia chinensis HOM05D004727 ORTHO05D005788 2.4e-38 163.7 146 63.0
AagrBONN_evm.TU.Sc2ySwM_344.2696 Anthoceros agrestis HOM05D004727 ORTHO05D005788 2.1e-37 160.6 132 59.1
arahy.Tifrunner.gnm1.ann1.FZN7A9 Arachis hypogaea HOM05D004727 ORTHO05D005788 1.7e-36 157.5 192 45.8
SEGI_30519 Sequoiadendron giganteum HOM05D004727 ORTHO05D005788 3.1e-33 146.7 102 66.7
EL10Ac4g07580 Beta vulgaris HOM05D004727 ORTHO05D005788 9.9e-32 141.7 162 49.4
FAN01G2810 Fragaria x ananassa HOM05D000427 ORTHO05D000386 1.1e-25 121.7 105 61.0
ECA233G3504 Erigeron canadensis HOM05D004727 ORTHO05D005788 1.4e-22 111.3 247 32.4
QL09p012777 Quercus lobata HOM05D004727 ORTHO05D005788 2.7e-21 107.1 145 48.3
SEGI_06548 Sequoiadendron giganteum HOM05D004727 ORTHO05D005788 8.7e-20 102.1 75 61.3
Mapoly1114s0001 Marchantia polymorpha HOM05D004727 ORTHO05D005788 2.5e-19 100.5 84 54.8
Ciclev10006767m.g Citrus clementina HOM05D004727 ORTHO05D005788 6.2e-18 95.9 76 59.2
SHI13754 Sapria himalayana HOM05D004727 ORTHO05D005788 5.3e-17 92.8 105 41.9
TWI39G0716 Tripterygium wilfordii HOM05D001943 ORTHO05D001969 9.0e-17 92.0 71 57.7
MD14G1086700 Malus domestica HOM05D004727 ORTHO05D005788 5.4e-14 82.8 79 59.5
Ah.13g069170 Amaranthus hybridus HOM05D004727 ORTHO05D005788 7.4e-11 72.4 92 51.1
Medtr4g012780 Medicago truncatula HOM05D004727 ORTHO05D005788 9.6e-11 72.0 72 48.6
Hund04787 Selenicereus undatus HOM05D021542 ORTHO05D383482 1.4e-06 58.2 43 55.8
AL7G26190 Arabidopsis lyrata HOM05D004727 ORTHO05D079975 1.9e-06 57.8 37 70.3


User provided reference genes

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