Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy7G00202 Aquilegia oxysepala HOM05D004003 ORTHO05D004595 6.1e-94 347.4 170 100.0
Gohir.D11G013100 Gossypium hirsutum HOM05D004003 ORTHO05D004595 1.7e-80 302.8 170 86.5
Duzib084G0289 Durio zibethinus HOM05D004003 ORTHO05D004595 1.1e-79 300.1 170 85.9
Duzib205G1856 Durio zibethinus HOM05D004003 ORTHO05D004595 1.9e-79 299.3 170 84.7
Gohir.A11G012800 Gossypium hirsutum HOM05D004003 ORTHO05D004595 3.2e-79 298.5 170 84.7
CiPaw.06G004300 Carya illinoinensis HOM05D004003 ORTHO05D004595 7.2e-79 297.4 170 84.1
Thecc.03G186200 Theobroma cacao HOM05D004003 ORTHO05D004595 7.2e-79 297.4 170 85.9
Gorai.008G273600 Gossypium raimondii HOM05D004003 ORTHO05D004595 1.2e-78 296.6 170 85.9
Gorai.007G013400 Gossypium raimondii HOM05D004003 ORTHO05D004595 1.6e-78 296.2 172 85.5
COL.COLO4_30289 Corchorus olitorius HOM05D004003 ORTHO05D004595 2.7e-78 295.4 168 85.1
Thhalv10026409m.g Eutrema salsugineum HOM05D004003 ORTHO05D004595 3.6e-78 295.0 170 84.1
Gohir.D12G255500 Gossypium hirsutum HOM05D004003 ORTHO05D004595 1.0e-77 293.5 170 84.7
Gohir.D12G255550 Gossypium hirsutum HOM05D004003 ORTHO05D004595 1.0e-77 293.5 170 84.7
Thhalv10014849m.g Eutrema salsugineum HOM05D004003 ORTHO05D004595 1.8e-77 292.7 170 83.5
TAR629G0127 Trochodendron aralioides HOM05D004003 ORTHO05D004595 1.8e-77 292.7 170 85.3
THA.LOC104825117 Tarenaya hassleriana HOM05D004003 ORTHO05D004595 2.3e-77 292.4 170 85.3
Gohir.A12G253200 Gossypium hirsutum HOM05D004003 ORTHO05D004595 5.2e-77 291.2 170 84.7
Aa31LG3G9080 Aethionema arabicum HOM05D004003 ORTHO05D004595 6.7e-77 290.8 170 83.5
Eucgr.A02717 Eucalyptus grandis HOM05D004003 ORTHO05D004595 6.7e-77 290.8 168 82.1
Sp7g25950 Schrenkiella parvula HOM05D004003 ORTHO05D004595 1.1e-76 290.0 170 82.4
Atru.chr1.335 Acer truncatum HOM05D004003 ORTHO05D004595 4.4e-76 288.1 170 81.8
AL8G27280 Arabidopsis lyrata HOM05D004003 ORTHO05D004595 4.4e-76 288.1 170 81.8
Sp6g15000 Schrenkiella parvula HOM05D004003 ORTHO05D004595 5.7e-76 287.7 170 82.4
THA.LOC104800278 Tarenaya hassleriana HOM05D004003 ORTHO05D004595 5.7e-76 287.7 167 84.4
BraA03t10847Z Brassica rapa HOM05D004003 ORTHO05D004595 1.3e-75 286.6 171 83.0
QL09p012375 Quercus lobata HOM05D004003 ORTHO05D004595 1.3e-75 286.6 169 82.2
Hma1.2p1_1713F.1_g298900 Hydrangea macrophylla HOM05D004003 ORTHO05D004595 1.7e-75 286.2 171 82.5
Carub.0008s1300 Capsella rubella HOM05D004003 ORTHO05D004595 2.8e-75 285.4 170 80.6
AT5G52840 Arabidopsis thaliana HOM05D004003 ORTHO05D004595 3.7e-75 285.0 170 81.2
GSVIVG01028820001 Vitis vinifera HOM05D004003 ORTHO05D004595 3.7e-75 285.0 170 81.8
BcaB01g04212 Brassica carinata HOM05D004003 ORTHO05D004595 4.8e-75 284.6 172 82.0
Nn6g32413 Nelumbo nucifera HOM05D004003 ORTHO05D004595 4.8e-75 284.6 170 81.8
PGR042G1718 Punica granatum HOM05D004003 ORTHO05D004595 4.8e-75 284.6 170 82.9
A03p15550 Brassica napus HOM05D004003 ORTHO05D004595 6.3e-75 284.3 171 82.5
PSO017G3679 Papaver somniferum HOM05D004003 ORTHO05D004595 8.2e-75 283.9 162 85.2
CARHR265770 Cardamine hirsuta HOM05D004003 ORTHO05D004595 1.1e-74 283.5 171 81.9
Ciclev10006072m.g Citrus clementina HOM05D004003 ORTHO05D004595 1.1e-74 283.5 172 82.6
Hund13071 Selenicereus undatus HOM05D004003 ORTHO05D004595 1.1e-74 283.5 170 81.2
BraA10t43109Z Brassica rapa HOM05D004003 ORTHO05D004595 1.4e-74 283.1 170 80.6
BolC3t14217H Brassica oleracea HOM05D004003 ORTHO05D004595 1.8e-74 282.7 171 81.9
MD01G1210300 Malus domestica HOM05D004003 ORTHO05D004595 1.8e-74 282.7 171 80.7
Oeu061668.1 Olea europaea HOM05D004003 ORTHO05D004595 1.8e-74 282.7 176 80.7
Sed0014667 Sechium edule HOM05D004003 ORTHO05D004595 1.8e-74 282.7 151 88.7
Sc14g0006860 Simmondsia chinensis HOM05D004003 ORTHO05D004595 1.8e-74 282.7 170 79.4
A02p11580 Brassica napus HOM05D004003 ORTHO05D004595 3.1e-74 282.0 170 80.6
BraA02t06220Z Brassica rapa HOM05D004003 ORTHO05D004595 3.1e-74 282.0 170 80.6
CSS0000705 Camellia sinensis var. sinensis HOM05D004003 ORTHO05D004595 3.1e-74 282.0 178 79.8
BcaC01g06202 Brassica carinata HOM05D004003 ORTHO05D004595 4.1e-74 281.6 171 81.3
C03p18160 Brassica napus HOM05D004003 ORTHO05D004595 4.1e-74 281.6 171 81.3
ClCG05G008500 Citrullus lanatus HOM05D004003 ORTHO05D004595 4.1e-74 281.6 155 86.5
CsaV3_3G017590 Cucumis sativus L. HOM05D004003 ORTHO05D004595 4.1e-74 281.6 160 85.6
BcaC04g20535 Brassica carinata HOM05D004003 ORTHO05D004595 5.3e-74 281.2 170 80.6
C09p42440 Brassica napus HOM05D004003 ORTHO05D004595 5.3e-74 281.2 170 80.6
Cc02_g02230 Coffea canephora HOM05D004003 ORTHO05D004595 5.3e-74 281.2 178 79.2
BcaB08g35638 Brassica carinata HOM05D004003 ORTHO05D004595 9.1e-74 280.4 170 80.6
MELO3C006949.2 Cucumis melo HOM05D004003 ORTHO05D004595 9.1e-74 280.4 150 88.7
PSO478G4828 Papaver somniferum HOM05D004003 ORTHO05D004595 9.1e-74 280.4 163 84.0
Rhsim03G0192400 Rhododendron simsii HOM05D004003 ORTHO05D004595 9.1e-74 280.4 170 81.8
MD07G1280400 Malus domestica HOM05D004003 ORTHO05D004595 1.2e-73 280.0 171 80.1
Manes.06G153700 Manihot esculenta HOM05D004003 ORTHO05D004595 1.2e-73 280.0 170 82.4
Sed0009881 Sechium edule HOM05D004003 ORTHO05D004595 1.2e-73 280.0 151 88.1
Actinidia08590 Actinidia chinensis HOM05D004003 ORTHO05D004595 1.6e-73 279.6 177 78.0
A10p10290 Brassica napus HOM05D004003 ORTHO05D004595 1.6e-73 279.6 170 80.0
Prupe.2G302600 Prunus persica HOM05D004003 ORTHO05D004595 4.5e-73 278.1 171 80.7
Manes.14G021000 Manihot esculenta HOM05D004003 ORTHO05D004595 7.7e-73 277.3 168 79.8
BcaB05g21985 Brassica carinata HOM05D004003 ORTHO05D004595 1.0e-72 276.9 170 80.6
Oeu003331.1 Olea europaea HOM05D004003 ORTHO05D004595 1.3e-72 276.6 177 78.5
Nitab4.5_0011314g0010 Nicotiana tabacum HOM05D004003 ORTHO05D004595 2.9e-72 275.4 174 81.0
FAN10G2159 Fragaria x ananassa HOM05D004003 ORTHO05D004595 5.0e-72 274.6 169 79.9
Lsat_1_v5_gn_2_131500 Lactuca sativa HOM05D004003 ORTHO05D004595 5.0e-72 274.6 171 79.5
SalBow2G3526 Salvia bowleyana HOM05D004003 ORTHO05D004595 5.0e-72 274.6 178 77.5
EL10Ac2g03211 Beta vulgaris HOM05D004003 ORTHO05D004595 8.5e-72 273.9 170 78.8
FvH4_7g30480 Fragaria vesca HOM05D004003 ORTHO05D004595 8.5e-72 273.9 169 79.9
FAN01G1512 Fragaria x ananassa HOM05D004003 ORTHO05D004595 8.5e-72 273.9 169 79.9
FAN06G3020 Fragaria x ananassa HOM05D004003 ORTHO05D004595 8.5e-72 273.9 169 79.9
Peaxi162Scf00444g00034 Petunia axillaris HOM05D004003 ORTHO05D004595 8.5e-72 273.9 174 78.7
Actinidia31844 Actinidia chinensis HOM05D004003 ORTHO05D004595 1.1e-71 273.5 156 83.3
FAN03G0349 Fragaria x ananassa HOM05D004003 ORTHO05D004595 1.1e-71 273.5 169 79.3
FAN03G2611 Fragaria x ananassa HOM05D004003 ORTHO05D004595 1.1e-71 273.5 169 79.3
RcHm_v2.0_Chr1g0378851 Rosa chinensis HOM05D004003 ORTHO05D004595 1.1e-71 273.5 169 79.9
AUR62037745 Chenopodium quinoa HOM05D004003 ORTHO05D004595 1.9e-71 272.7 163 80.4
DCAR_010652 Daucus carota HOM05D004003 ORTHO05D004595 1.9e-71 272.7 173 79.2
Dinv35269 Davidia involucrata HOM05D004003 ORTHO05D004595 2.5e-71 272.3 151 86.1
FAN10G2319 Fragaria x ananassa HOM05D004003 ORTHO05D004595 3.2e-71 271.9 169 79.3
FAN06G1184 Fragaria x ananassa HOM05D004003 ORTHO05D004595 4.2e-71 271.6 169 79.3
SGA_v2.0_scaffold10G05280 Striga asiatica HOM05D004003 ORTHO05D004595 5.5e-71 271.2 176 79.0
Potri.004G071900 Populus trichocarpa HOM05D004003 ORTHO05D004595 7.2e-71 270.8 172 78.5
Solyc03g007660.4 Solanum lycopersicum HOM05D004003 ORTHO05D004595 7.2e-71 270.8 174 79.3
Sopen03g003590 Solanum pennellii HOM05D004003 ORTHO05D004595 9.4e-71 270.4 174 79.3
Migut.F01081 Erythranthe guttata HOM05D004003 ORTHO05D004595 1.2e-70 270.0 178 75.8
Lsat_1_v5_gn_9_56860 Lactuca sativa HOM05D004003 ORTHO05D004595 1.2e-70 270.0 169 78.7
Rhsim09G0201100 Rhododendron simsii HOM05D004003 ORTHO05D004595 1.2e-70 270.0 171 77.2
CAN.G126.15 Capsicum annuum HOM05D004003 ORTHO05D004595 1.6e-70 269.6 174 78.7
Ah.11g045360 Amaranthus hybridus HOM05D004003 ORTHO05D004595 2.1e-70 269.2 151 84.1
TWI23G0858 Tripterygium wilfordii HOM05D004003 ORTHO05D004595 2.1e-70 269.2 170 80.0
Actinidia03142 Actinidia chinensis HOM05D004003 ORTHO05D004595 2.7e-70 268.9 168 78.0
arahy.Tifrunner.gnm1.ann1.SB31NP Arachis hypogaea HOM05D004003 ORTHO05D004595 3.6e-70 268.5 168 78.0
DCAR_020275 Daucus carota HOM05D004003 ORTHO05D004595 4.7e-70 268.1 159 83.6
C02p19300 Brassica napus HOM05D004003 ORTHO05D004595 8.0e-70 267.3 170 78.2
BolC2t08066H Brassica oleracea HOM05D004003 ORTHO05D004595 8.0e-70 267.3 170 78.2
TWI14G1326 Tripterygium wilfordii HOM05D004003 ORTHO05D004595 1.0e-69 266.9 173 78.6
MSTRG.8697 Avicennia marina HOM05D004003 ORTHO05D004595 1.8e-69 266.2 178 75.3
Lj1A1007T57 Lonicera japonica HOM05D004003 ORTHO05D004595 1.8e-69 266.2 180 76.1
Lj1A1007T58 Lonicera japonica HOM05D004003 ORTHO05D004595 1.8e-69 266.2 180 76.1
CANSAT21G1389 Cannabis sativa HOM05D004003 ORTHO05D004595 2.3e-69 265.8 149 83.2
CANSAT21G1446 Cannabis sativa HOM05D004003 ORTHO05D004595 2.3e-69 265.8 149 83.2
Dinv28379 Davidia involucrata HOM05D004003 ORTHO05D004595 2.3e-69 265.8 146 86.3
Lj2g0001989 Lotus japonicus HOM05D004003 ORTHO05D004595 3.0e-69 265.4 168 76.8
arahy.Tifrunner.gnm1.ann1.R03NAB Arachis hypogaea HOM05D004003 ORTHO05D004595 5.2e-69 264.6 168 76.8
Sopen06g012130 Solanum pennellii HOM05D004003 ORTHO05D004595 6.8e-69 264.2 175 76.6
HanXRQChr15g0494181 Helianthus annuus HOM05D004003 ORTHO05D004595 8.8e-69 263.8 169 76.9
Lalb_Chr03g0034981 Lupinus albus HOM05D004003 ORTHO05D004595 8.8e-69 263.8 164 78.0
Lalb_Chr19g0130491 Lupinus albus HOM05D004003 ORTHO05D004595 1.2e-68 263.5 164 78.7
Sabra17G0124400 Salix brachista HOM05D004003 ORTHO05D004595 1.2e-68 263.5 166 77.7
Potri.017G149100 Populus trichocarpa HOM05D004003 ORTHO05D004595 1.5e-68 263.1 170 76.5
Solyc06g036350.3 Solanum lycopersicum HOM05D004003 ORTHO05D004595 2.6e-68 262.3 175 76.0
VMungo0464G2050 Vigna mungo HOM05D004003 ORTHO05D004595 2.6e-68 262.3 168 76.8
ECA232G1033 Erigeron canadensis HOM05D004003 ORTHO05D004595 3.4e-68 261.9 171 74.9
ECA233G0998 Erigeron canadensis HOM05D004003 ORTHO05D004595 4.4e-68 261.5 172 75.6
Glyma.09G129000 Glycine max HOM05D004003 ORTHO05D004595 4.4e-68 261.5 168 76.8
Nitab4.5_0000472g0260 Nicotiana tabacum HOM05D004003 ORTHO05D004595 4.4e-68 261.5 153 84.3
PGSC0003DMG400028905 Solanum tuberosum HOM05D004003 ORTHO05D004595 9.8e-68 260.4 175 75.4
Sabra04G0047300 Salix brachista HOM05D004003 ORTHO05D004595 1.3e-67 260.0 172 76.7
CDE05G0545 Ceratophyllum demersum HOM05D004003 ORTHO05D004595 3.7e-67 258.5 162 77.2
Psat5g299680 Pisum sativum HOM05D004003 ORTHO05D004595 3.7e-67 258.5 157 79.0
Psat0s1604g0040 Pisum sativum HOM05D004003 ORTHO05D004595 6.3e-67 257.7 157 79.0
HPP92_001384 Vanilla planifolia HOM05D004003 ORTHO05D004595 8.3e-67 257.3 164 77.4
Ca_20595_v3 Cicer arietinum L. HOM05D004003 ORTHO05D004595 1.4e-66 256.5 157 78.3
Phvul.004G105700 Phaseolus vulgaris HOM05D004003 ORTHO05D004595 1.8e-66 256.1 164 75.6
Medtr6g053280 Medicago truncatula HOM05D004003 ORTHO05D004595 2.4e-66 255.8 157 79.0
CDE05G3305 Ceratophyllum demersum HOM05D004003 ORTHO05D004595 3.1e-66 255.4 162 75.3
unitig_0.g1158 Utricularia gibba HOM05D004003 ORTHO05D004595 2.0e-65 252.7 158 77.2
vmacro06614 Vaccinium macrocarpon HOM05D004003 ORTHO05D004595 2.0e-65 252.7 228 59.6
TPR.G27150 Trifolium pratense HOM05D004003 ORTHO05D004595 2.7e-65 252.3 157 77.7
Zm00001eb015010 Zea mays HOM05D004003 ORTHO05D004595 2.5e-63 245.7 169 73.4
ATR0721G154 Amborella trichopoda HOM05D004003 ORTHO05D004595 1.2e-62 243.4 147 77.6
Os03g0313000 Oryza sativa ssp. japonica HOM05D004003 ORTHO05D004595 2.7e-62 242.3 169 71.0
PSO478G1314 Papaver somniferum HOM05D004003 ORTHO05D004595 8.0e-62 240.7 137 83.2
TAR636G0624 Trochodendron aralioides HOM05D004003 ORTHO05D004595 8.3e-59 230.7 129 86.8
AUR62042233 Chenopodium quinoa HOM05D004003 ORTHO05D004595 1.8e-58 229.6 163 69.9
Haze_00063 Corylus avellana HOM05D004003 ORTHO05D004595 7.7e-57 224.2 127 84.3
SEGI_14933 Sequoiadendron giganteum HOM05D004003 ORTHO05D004595 8.6e-56 220.7 164 64.0
BolC9t57124H Brassica oleracea HOM05D004003 ORTHO05D004595 5.6e-55 218.0 170 65.3
MD00G1172600 Malus domestica HOM05D004003 ORTHO05D004595 1.1e-50 203.8 132 75.0
MD13G1261600 Malus domestica HOM05D004003 ORTHO05D004595 6.2e-46 188.0 111 79.3
Pp3c5_12290 Physcomitrium patens HOM05D004003 ORTHO05D004595 1.4e-45 186.8 134 67.2
AagrBONN_evm.TU.Sc2ySwM_344.4010 Anthoceros agrestis HOM05D004003 ORTHO05D004595 2.0e-44 183.0 134 65.7
CBR_g31069 Chara braunii HOM05D004003 ORTHO05D004595 7.5e-44 181.0 133 61.7
vmacro09809 Vaccinium macrocarpon HOM05D004003 ORTHO05D004595 3.2e-42 175.6 149 60.4
Mapoly0111s0029 Marchantia polymorpha HOM05D004003 ORTHO05D004595 3.5e-41 172.2 134 60.4
Ah.10g032500 Amaranthus hybridus HOM05D004003 ORTHO05D004595 4.6e-41 171.8 154 59.1
HanXRQChr10g0304961 Helianthus annuus HOM05D004003 ORTHO05D004595 6.0e-41 171.4 108 80.6
Thhalv10015894m.g Eutrema salsugineum HOM05D004003 ORTHO05D004595 3.3e-39 165.6 170 56.5
Zm00001eb395850 Zea mays HOM05D004003 ORTHO05D004595 3.4e-36 155.6 112 71.4
BcaC03g14495 Brassica carinata HOM05D004003 ORTHO05D004595 2.7e-33 146.0 88 83.0
SMO119G0129 Selaginella moellendorffii HOM05D004003 ORTHO05D004595 1.7e-32 143.3 120 56.7
RcHm_v2.0_Chr1g0362161 Rosa chinensis HOM05D004003 ORTHO05D004595 1.1e-31 140.6 86 81.4
CAN.G311.32 Capsicum annuum HOM05D005247 ORTHO05D006571 1.7e-27 126.7 105 66.7
Ah.03g141030 Amaranthus hybridus HOM05D004003 ORTHO05D004595 2.2e-27 126.3 99 63.6
Psat6g098040 Pisum sativum HOM05D000395 ORTHO05D004595 4.9e-27 125.2 97 67.0
AT4G28005 Arabidopsis thaliana HOM05D004003 ORTHO05D004595 7.1e-26 121.3 170 45.9
ECA240G1980 Erigeron canadensis HOM05D004003 ORTHO05D004595 1.9e-23 113.2 125 44.0
ECA240G4361 Erigeron canadensis HOM05D004003 ORTHO05D004595 1.9e-23 113.2 125 44.0
ECA240G4047 Erigeron canadensis HOM05D004003 ORTHO05D004595 5.6e-23 111.7 129 42.6
BcaC03g14494 Brassica carinata HOM05D004003 ORTHO05D004595 2.1e-22 109.8 68 73.5
COL.COLO4_06858 Corchorus olitorius HOM05D004003 ORTHO05D004595 3.6e-22 109.0 65 76.9
Dinv24022 Davidia involucrata HOM05D004003 ORTHO05D004595 6.2e-22 108.2 71 74.6
ECA238G0868 Erigeron canadensis HOM05D004003 ORTHO05D004595 6.2e-22 108.2 164 37.8
CAN.G204.11 Capsicum annuum HOM05D004003 ORTHO05D004595 6.9e-21 104.8 55 81.8
MCO01G593 Micromonas commoda HOM05D004003 ORTHO05D004595 1.3e-16 90.5 96 43.8
MCO01G594 Micromonas commoda HOM05D004003 ORTHO05D004595 1.3e-16 90.5 96 43.8
Rhsim03G0124900 Rhododendron simsii HOM05D004003 ORTHO05D004595 1.9e-15 86.7 55 76.4
CAN.G640.19 Capsicum annuum HOM05D004003 ORTHO05D004595 4.3e-15 85.5 64 65.6
Haze_26197 Corylus avellana HOM05D004003 ORTHO05D004595 9.6e-15 84.3 95 41.1
ATR0721G175 Amborella trichopoda HOM05D004003 ORTHO05D004595 1.5e-12 77.0 47 68.1
Cre13.g568800 Chlamydomonas reinhardtii HOM05D004003 ORTHO05D004595 1.1e-10 70.9 95 43.2


User provided reference genes

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