Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy7G00181 Aquilegia oxysepala HOM05D004975 ORTHO05D005963 2.3e-108 395.6 198 100.0
TAR625G0147 Trochodendron aralioides HOM05D004975 ORTHO05D005963 4.4e-88 328.2 197 80.7
TAR383G0773 Trochodendron aralioides HOM05D004975 ORTHO05D005963 1.9e-86 322.8 197 79.2
Cpa.g.sc6.221 Carica papaya HOM05D004975 ORTHO05D005963 3.9e-84 315.1 197 78.2
Duzib187G1289 Durio zibethinus HOM05D004975 ORTHO05D005963 5.6e-83 311.2 201 77.6
TAR383G0873 Trochodendron aralioides HOM05D004975 ORTHO05D005963 8.1e-82 307.4 190 78.9
Manes.17G086700 Manihot esculenta HOM05D004975 ORTHO05D005963 5.3e-81 304.7 189 78.8
Thecc.09G007400 Theobroma cacao HOM05D004975 ORTHO05D005963 1.2e-80 303.5 190 77.4
CiPaw.01G062200 Carya illinoinensis HOM05D004975 ORTHO05D005963 1.5e-80 303.1 198 74.7
CiPaw.08G019900 Carya illinoinensis HOM05D004975 ORTHO05D005963 2.0e-80 302.8 198 74.7
QL12p025158 Quercus lobata HOM05D004975 ORTHO05D005963 2.0e-80 302.8 197 74.1
Dinv30242 Davidia involucrata HOM05D004975 ORTHO05D005963 5.8e-80 301.2 197 74.1
TWI34G1428 Tripterygium wilfordii HOM05D004975 ORTHO05D005963 5.8e-80 301.2 197 74.1
ClCG10G000990 Citrullus lanatus HOM05D004975 ORTHO05D005963 9.9e-80 300.4 190 76.3
CSS0002597 Camellia sinensis var. sinensis HOM05D004975 ORTHO05D005963 1.3e-79 300.1 190 76.8
Actinidia13302 Actinidia chinensis HOM05D004975 ORTHO05D005963 2.2e-79 299.3 191 77.0
Hma1.2p1_0140F.1_g063690 Hydrangea macrophylla HOM05D004975 ORTHO05D005963 3.8e-79 298.5 190 76.8
Atru.chr7.2646 Acer truncatum HOM05D004975 ORTHO05D005963 6.4e-79 297.7 190 76.8
MELO3C013792.2 Cucumis melo HOM05D004975 ORTHO05D005963 6.4e-79 297.7 197 73.1
Actinidia13417 Actinidia chinensis HOM05D004975 ORTHO05D005963 8.4e-79 297.4 189 77.2
TWI63G0658 Tripterygium wilfordii HOM05D004975 ORTHO05D005963 1.9e-78 296.2 199 73.4
Ciclev10009422m.g Citrus clementina HOM05D004975 ORTHO05D005963 4.2e-78 295.0 190 74.7
Gorai.001G069100 Gossypium raimondii HOM05D004975 ORTHO05D005963 7.1e-78 294.3 187 77.0
Hund22233 Selenicereus undatus HOM05D004975 ORTHO05D005963 7.1e-78 294.3 189 77.8
PGR044G1665 Punica granatum HOM05D004975 ORTHO05D005963 9.3e-78 293.9 188 75.5
Duzib168G2230 Durio zibethinus HOM05D004975 ORTHO05D005963 1.6e-77 293.1 189 76.7
Gohir.A07G060900 Gossypium hirsutum HOM05D004975 ORTHO05D005963 2.1e-77 292.7 187 77.0
THA.LOC104803875 Tarenaya hassleriana HOM05D004975 ORTHO05D005963 2.7e-77 292.4 177 76.8
Hund06848 Selenicereus undatus HOM05D004975 ORTHO05D005963 3.5e-77 292.0 190 76.3
GSVIVG01009932001 Vitis vinifera HOM05D004975 ORTHO05D005963 3.5e-77 292.0 189 75.1
CsaV3_3G001030 Cucumis sativus L. HOM05D004975 ORTHO05D005963 4.6e-77 291.6 189 74.1
Sed0019969 Sechium edule HOM05D004975 ORTHO05D005963 6.0e-77 291.2 187 74.3
Sc24g0001980 Simmondsia chinensis HOM05D004975 ORTHO05D005963 1.0e-76 290.4 190 75.3
COL.COLO4_19031 Corchorus olitorius HOM05D004975 ORTHO05D005963 5.1e-76 288.1 190 74.2
ATR0580G184 Amborella trichopoda HOM05D004975 ORTHO05D005963 6.6e-76 287.7 192 70.3
arahy.Tifrunner.gnm1.ann1.1NF0KF Arachis hypogaea HOM05D004975 ORTHO05D005963 8.7e-76 287.3 186 74.7
Gohir.D07G065600 Gossypium hirsutum HOM05D004975 ORTHO05D005963 8.7e-76 287.3 187 76.5
CANSAT25G3538 Cannabis sativa HOM05D004975 ORTHO05D005963 1.1e-75 287.0 189 73.0
Cc08_g08560 Coffea canephora HOM05D004975 ORTHO05D005963 1.1e-75 287.0 194 71.1
Eucgr.H01931 Eucalyptus grandis HOM05D004975 ORTHO05D005963 1.1e-75 287.0 190 72.6
Lalb_Chr18g0045061 Lupinus albus HOM05D004975 ORTHO05D005963 1.1e-75 287.0 187 74.3
Ah.06g191340 Amaranthus hybridus HOM05D004975 ORTHO05D005963 1.9e-75 286.2 177 78.5
arahy.Tifrunner.gnm1.ann1.KS8K1P Arachis hypogaea HOM05D004975 ORTHO05D005963 4.3e-75 285.0 186 74.2
MSTRG.11721 Avicennia marina HOM05D004975 ORTHO05D005963 4.3e-75 285.0 190 72.6
SGA_v2.0_scaffold229G43318 Striga asiatica HOM05D004975 ORTHO05D005963 9.6e-75 283.9 191 72.3
CANSAT64G0033 Cannabis sativa HOM05D004975 ORTHO05D005963 1.3e-74 283.5 189 72.0
AL7G20600 Arabidopsis lyrata HOM05D004975 ORTHO05D005963 2.1e-74 282.7 177 74.6
EL10Ac2g04836 Beta vulgaris HOM05D004975 ORTHO05D005963 2.1e-74 282.7 177 76.3
arahy.Tifrunner.gnm1.ann1.GL41SS Arachis hypogaea HOM05D004975 ORTHO05D005963 6.2e-74 281.2 186 73.1
MBI16_g41808_MAGBIO Magnolia biondii HOM05D004975 ORTHO05D005963 8.1e-74 280.8 189 70.4
CARHR239350 Cardamine hirsuta HOM05D004975 ORTHO05D005963 1.1e-73 280.4 177 74.0
SGA_v2.0_scaffold27G11528 Striga asiatica HOM05D004975 ORTHO05D005963 1.1e-73 280.4 189 71.4
Lj3g0002799 Lotus japonicus HOM05D004975 ORTHO05D005963 2.4e-73 279.3 186 73.1
Lj3g0015990 Lotus japonicus HOM05D004975 ORTHO05D005963 3.1e-73 278.9 186 73.1
Psat6g036480 Pisum sativum HOM05D004975 ORTHO05D005963 3.1e-73 278.9 187 72.2
Medtr1g007480 Medicago truncatula HOM05D004975 ORTHO05D005963 5.3e-73 278.1 187 70.1
Potri.018G006900 Populus trichocarpa HOM05D004975 ORTHO05D005963 1.5e-72 276.6 189 71.4
TPR.G24523 Trifolium pratense HOM05D004975 ORTHO05D005963 2.0e-72 276.2 195 69.2
Migut.A00251 Erythranthe guttata HOM05D004975 ORTHO05D005963 2.6e-72 275.8 189 70.4
Aa31LG2G18860 Aethionema arabicum HOM05D004975 ORTHO05D005963 3.4e-72 275.4 197 66.5
AT4G31460 Arabidopsis thaliana HOM05D004975 ORTHO05D005963 5.8e-72 274.6 174 74.1
Glyma.12G071700 Glycine max HOM05D004975 ORTHO05D005963 9.9e-72 273.9 187 71.1
Lsat_1_v5_gn_1_49060 Lactuca sativa HOM05D004975 ORTHO05D005963 9.9e-72 273.9 196 67.9
Glyma.11G153169 Glycine max HOM05D004975 ORTHO05D005963 1.3e-71 273.5 187 70.6
EL10Ac4g08846 Beta vulgaris HOM05D004975 ORTHO05D005963 2.2e-71 272.7 168 76.8
C01p07550 Brassica napus HOM05D004975 ORTHO05D005963 2.2e-71 272.7 169 74.6
BolC1t00736H Brassica oleracea HOM05D004975 ORTHO05D005963 2.2e-71 272.7 169 74.6
Ca_12771_v3 Cicer arietinum L. HOM05D004975 ORTHO05D005963 2.2e-71 272.7 184 71.2
CDE05G0021 Ceratophyllum demersum HOM05D004975 ORTHO05D005963 2.9e-71 272.3 197 68.0
Thhalv10026230m.g Eutrema salsugineum HOM05D004975 ORTHO05D005963 3.8e-71 271.9 169 74.0
BraA08t33823Z Brassica rapa HOM05D004975 ORTHO05D005963 6.4e-71 271.2 169 74.0
BcaB03g12697 Brassica carinata HOM05D004975 ORTHO05D005963 8.4e-71 270.8 169 74.0
A01p06810 Brassica napus HOM05D004975 ORTHO05D005963 8.4e-71 270.8 169 73.4
BraA01t00633Z Brassica rapa HOM05D004975 ORTHO05D005963 8.4e-71 270.8 169 73.4
Carub.0007s0909 Capsella rubella HOM05D004975 ORTHO05D005963 8.4e-71 270.8 169 74.0
Phvul.011G072600 Phaseolus vulgaris HOM05D004975 ORTHO05D005963 8.4e-71 270.8 187 71.1
Nitab4.5_0002393g0070 Nicotiana tabacum HOM05D004975 ORTHO05D005963 1.1e-70 270.4 200 67.0
Sp7g29320 Schrenkiella parvula HOM05D004975 ORTHO05D005963 1.1e-70 270.4 169 74.0
BcaNung04586 Brassica carinata HOM05D004975 ORTHO05D005963 1.9e-70 269.6 168 73.8
A08p18600 Brassica napus HOM05D004975 ORTHO05D005963 1.9e-70 269.6 168 73.8
BcaC09g51928 Brassica carinata HOM05D004975 ORTHO05D005963 2.4e-70 269.2 169 73.4
Nitab4.5_0000250g0160 Nicotiana tabacum HOM05D004975 ORTHO05D005963 3.2e-70 268.9 205 65.4
VMungo1127G2243 Vigna mungo HOM05D004975 ORTHO05D005963 3.2e-70 268.9 186 70.4
ECA248G0122 Erigeron canadensis HOM05D004975 ORTHO05D005963 5.5e-70 268.1 190 69.5
Peaxi162Scf00105g00510 Petunia axillaris HOM05D004975 ORTHO05D005963 9.3e-70 267.3 192 68.2
Solyc08g065760.3 Solanum lycopersicum HOM05D004975 ORTHO05D005963 9.3e-70 267.3 178 73.0
Sopen10g033590 Solanum pennellii HOM05D004975 ORTHO05D005963 9.3e-70 267.3 178 73.0
CDE02G4585 Ceratophyllum demersum HOM05D004975 ORTHO05D005963 1.6e-69 266.5 188 68.1
unitig_46.g18530 Utricularia gibba HOM05D004975 ORTHO05D005963 2.7e-69 265.8 184 69.6
BcaC01g01087 Brassica carinata HOM05D004975 ORTHO05D005963 4.6e-69 265.0 169 72.8
C03p87960 Brassica napus HOM05D004975 ORTHO05D005963 4.6e-69 265.0 169 72.8
BolC3t21107H Brassica oleracea HOM05D004975 ORTHO05D005963 4.6e-69 265.0 169 72.8
PGSC0003DMG400013829 Solanum tuberosum HOM05D004975 ORTHO05D005963 4.6e-69 265.0 178 71.9
DCAR_007697 Daucus carota HOM05D004975 ORTHO05D005963 7.9e-69 264.2 190 68.9
Sopen08g019440 Solanum pennellii HOM05D004975 ORTHO05D005963 1.3e-68 263.5 178 71.9
ECA248G2823 Erigeron canadensis HOM05D004975 ORTHO05D005963 2.3e-68 262.7 191 68.6
arahy.Tifrunner.gnm1.ann1.57HDZK Arachis hypogaea HOM05D004975 ORTHO05D005963 1.5e-67 260.0 200 66.5
HanXRQChr01g0029381 Helianthus annuus HOM05D004975 ORTHO05D005963 3.3e-67 258.8 189 67.2
HanXRQChr11g0341541 Helianthus annuus HOM05D004975 ORTHO05D005963 4.3e-67 258.5 189 67.2
Os07g0544900 Oryza sativa ssp. japonica HOM05D004975 ORTHO05D005963 1.6e-66 256.5 190 65.3
SHI04272 Sapria himalayana HOM05D004975 ORTHO05D005963 2.1e-66 256.1 191 67.0
Rhsim04G0150100 Rhododendron simsii HOM05D004975 ORTHO05D005963 8.1e-66 254.2 183 69.4
HPP92_011116 Vanilla planifolia HOM05D004975 ORTHO05D005963 1.5e-64 250.0 192 64.1
Zm00001eb323470 Zea mays HOM05D004975 ORTHO05D005963 2.0e-64 249.6 175 65.7
FvH4_2g36661 Fragaria vesca HOM05D004975 ORTHO05D005963 1.1e-62 243.8 190 65.8
RcHm_v2.0_Chr6g0305011 Rosa chinensis HOM05D004975 ORTHO05D005963 1.1e-62 243.8 190 65.8
FAN20G1154 Fragaria x ananassa HOM05D007251 ORTHO05D009266 9.3e-62 240.7 190 64.7
PSO063G2087 Papaver somniferum HOM05D004975 ORTHO05D005963 1.6e-61 240.0 199 61.3
MD15G1107600 Malus domestica HOM05D004975 ORTHO05D005963 3.5e-61 238.8 208 59.6
Zm00001eb106440 Zea mays HOM05D004975 ORTHO05D005963 3.5e-61 238.8 192 59.4
PSO063G4606 Papaver somniferum HOM05D004975 ORTHO05D005963 6.0e-61 238.0 199 60.8
PSO170G1562 Papaver somniferum HOM05D004975 ORTHO05D005963 7.9e-61 237.7 199 60.8
MD08G1128100 Malus domestica HOM05D004975 ORTHO05D005963 1.0e-60 237.3 208 60.1
Prupe.1G459900 Prunus persica HOM05D004975 ORTHO05D005963 5.1e-60 235.0 209 60.3
Sabra18G0014600 Salix brachista HOM05D004975 ORTHO05D005963 5.1e-60 235.0 275 48.0
Haze_21744 Corylus avellana HOM05D004975 ORTHO05D005963 2.8e-58 229.2 286 47.2
SEGI_29047 Sequoiadendron giganteum HOM05D004975 ORTHO05D005963 3.4e-56 222.2 169 62.1
Manes.15G137600 Manihot esculenta HOM05D004975 ORTHO05D005963 2.9e-55 219.2 189 58.7
Nn2g12690 Nelumbo nucifera HOM05D004975 ORTHO05D005963 1.1e-54 217.2 132 80.3
FAN06G0478 Fragaria x ananassa HOM05D004975 ORTHO05D005963 1.9e-54 216.5 165 68.5
FvH4_7g03740 Fragaria vesca HOM05D004975 ORTHO05D005963 9.3e-54 214.2 147 72.8
PSO782G1312 Papaver somniferum HOM05D004975 ORTHO05D005963 5.1e-52 208.4 140 69.3
Lj7C709T7 Lonicera japonica HOM05D004975 ORTHO05D005963 5.3e-49 198.4 132 71.2
CAN.G886.9 Capsicum annuum HOM05D004975 ORTHO05D005963 5.5e-46 188.3 113 77.9
AUR62027460 Chenopodium quinoa HOM05D004975 ORTHO05D005963 7.2e-46 188.0 112 79.5
Ca_29761_v3 Cicer arietinum L. HOM05D004975 ORTHO05D005963 6.1e-45 184.9 122 73.8
HPP92_011121 Vanilla planifolia HOM05D004975 ORTHO05D005963 7.4e-43 177.9 142 62.0
vmacro05353 Vaccinium macrocarpon HOM05D004975 ORTHO05D005963 1.1e-41 174.1 126 68.3
Oeu031567.1 Olea europaea HOM05D004975 ORTHO05D005963 1.4e-41 173.7 111 71.2
Cfa013273 Carpinus fangiana HOM05D004975 ORTHO05D005963 3.1e-41 172.6 107 75.7
Mapoly0026s0002 Marchantia polymorpha HOM05D004975 ORTHO05D005963 1.8e-36 156.8 113 63.7
Pp3c2_35700 Physcomitrium patens HOM05D004975 ORTHO05D005963 8.8e-36 154.5 113 61.9
AagrBONN_evm.TU.Sc2ySwM_117.1642 Anthoceros agrestis HOM05D004975 ORTHO05D005963 1.5e-35 153.7 108 62.0
Solyc10g038060.2 Solanum lycopersicum HOM05D004975 ORTHO05D005963 5.7e-35 151.8 85 83.5
SMO367G1088 Selaginella moellendorffii HOM05D004975 ORTHO05D005963 2.2e-34 149.8 96 69.8
BcaC01g01097 Brassica carinata HOM05D004975 ORTHO05D005963 1.7e-31 140.2 93 68.8
C03p88060 Brassica napus HOM05D004975 ORTHO05D005963 2.9e-31 139.4 91 69.2
BcaNung01521 Brassica carinata HOM05D004975 ORTHO05D005963 5.2e-28 128.6 79 75.9
BcaNung04139 Brassica carinata HOM05D004975 ORTHO05D005963 2.0e-27 126.7 116 59.5
Aqoxy3G03669 Aquilegia oxysepala HOM05D004975 ORTHO05D005963 5.5e-22 108.6 60 81.7
BcaB03g12699 Brassica carinata HOM05D004975 ORTHO05D005963 1.6e-21 107.1 90 57.8
AUR62027459 Chenopodium quinoa HOM05D004975 ORTHO05D005963 4.0e-20 102.4 66 72.7
PRCOL_00000323 Prasinoderma coloniale HOM05D004975 ORTHO05D005963 1.2e-16 90.9 93 48.4
Oeu033208.1 Olea europaea HOM05D004975 ORTHO05D005963 2.5e-14 83.2 59 62.7
Sopen10g011390 Solanum pennellii HOM05D004975 ORTHO05D005963 5.2e-12 75.5 59 62.7
Cfa025056 Carpinus fangiana HOM05D004975 ORTHO05D005963 6.8e-12 75.1 106 35.8
CBR_g8145 Chara braunii HOM05D004975 ORTHO05D005963 2.6e-11 73.2 54 59.3
CiPaw.07G212300 Carya illinoinensis HOM05D004975 ORTHO05D005963 3.7e-10 69.3 48 68.8
AagrBONN_evm.TU.Sc2ySwM_368.1480 Anthoceros agrestis HOM05D001654 ORTHO05D002773 1.4e-09 67.4 46 56.5


User provided reference genes

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