Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy7G00093 Aquilegia oxysepala HOM05D005115 ORTHO05D005703 4.4e-104 381.3 198 100.0
Nn3g19002 Nelumbo nucifera HOM05D005115 ORTHO05D005703 2.3e-60 236.1 202 66.8
TAR375G0477 Trochodendron aralioides HOM05D005115 ORTHO05D005703 3.2e-54 215.7 198 67.2
Dinv37526 Davidia involucrata HOM05D005115 ORTHO05D005703 3.5e-53 212.2 196 66.8
TAR375G0257 Trochodendron aralioides HOM05D005115 ORTHO05D005703 1.3e-52 210.3 201 66.2
Rhsim02G0244500 Rhododendron simsii HOM05D005115 ORTHO05D005703 2.4e-49 199.5 199 62.8
Dinv38826 Davidia involucrata HOM05D007126 ORTHO05D008974 3.4e-48 195.7 194 62.9
Thecc.03G298900 Theobroma cacao HOM05D005115 ORTHO05D005703 1.3e-47 193.7 207 59.9
Duzib068G0330 Durio zibethinus HOM05D005115 ORTHO05D005703 1.1e-46 190.7 203 59.6
Gohir.A09G190300 Gossypium hirsutum HOM05D005115 ORTHO05D005703 1.9e-46 189.9 207 58.5
Solyc08g008350.3 Solanum lycopersicum HOM05D005115 ORTHO05D005703 1.9e-46 189.9 197 61.4
Glyma.11G017800 Glycine max HOM05D005115 ORTHO05D005703 4.2e-46 188.7 204 60.3
Cfa011998 Carpinus fangiana HOM05D005115 ORTHO05D005703 9.4e-46 187.6 201 59.2
Cc08_g16140 Coffea canephora HOM05D005115 ORTHO05D005703 1.6e-45 186.8 194 60.8
Gohir.D09G185000 Gossypium hirsutum HOM05D005115 ORTHO05D005703 4.6e-45 185.3 205 57.1
Gorai.006G207500 Gossypium raimondii HOM05D005115 ORTHO05D005703 1.0e-44 184.1 206 56.8
Phvul.002G164100 Phaseolus vulgaris HOM05D005115 ORTHO05D005703 1.0e-44 184.1 205 59.5
Glyma.01G225300 Glycine max HOM05D005115 ORTHO05D005703 1.8e-44 183.3 204 59.3
Hma1.2p1_0440F.1_g153350 Hydrangea macrophylla HOM05D005115 ORTHO05D005703 2.3e-44 183.0 218 57.3
Duzib084G1297 Durio zibethinus HOM05D005115 ORTHO05D005703 6.7e-44 181.4 205 57.1
Prupe.5G120800 Prunus persica HOM05D005115 ORTHO05D005703 3.3e-43 179.1 208 58.7
CiPaw.11G120600 Carya illinoinensis HOM05D005115 ORTHO05D005703 4.3e-43 178.7 201 58.7
arahy.Tifrunner.gnm1.ann1.V4I9JE Arachis hypogaea HOM05D005115 ORTHO05D005703 5.7e-43 178.3 204 57.8
VMungo1215G1874 Vigna mungo HOM05D005115 ORTHO05D005703 1.7e-42 176.8 204 57.8
vmacro11350 Vaccinium macrocarpon HOM05D005115 ORTHO05D005703 3.7e-42 175.6 242 51.2
Nitab4.5_0002231g0060 Nicotiana tabacum HOM05D005115 ORTHO05D005703 8.2e-42 174.5 223 53.4
Peaxi162Scf00102g01844 Petunia axillaris HOM05D005115 ORTHO05D005703 8.2e-42 174.5 196 58.2
Gohir.D11G024900 Gossypium hirsutum HOM05D005115 ORTHO05D005703 1.1e-41 174.1 204 57.8
arahy.Tifrunner.gnm1.ann1.M14U5A Arachis hypogaea HOM05D005115 ORTHO05D005703 2.4e-41 172.9 204 56.9
Duzib205G0660 Durio zibethinus HOM05D005115 ORTHO05D005703 4.1e-41 172.2 204 55.9
MBI06_g08472_MAGBIO Magnolia biondii HOM05D005115 ORTHO05D005703 4.1e-41 172.2 221 56.1
PSO384G2123 Papaver somniferum HOM05D005115 ORTHO05D005703 4.1e-41 172.2 209 56.9
AUR62010847 Chenopodium quinoa HOM05D000034 ORTHO05D005703 5.3e-41 171.8 202 55.0
Gorai.007G026700 Gossypium raimondii HOM05D005115 ORTHO05D005703 6.9e-41 171.4 204 56.9
ClCG07G011580 Citrullus lanatus HOM05D005115 ORTHO05D005703 1.5e-40 170.2 175 63.4
FAN18G1353 Fragaria x ananassa HOM05D005115 ORTHO05D005703 1.5e-40 170.2 204 56.9
Gohir.A11G025300 Gossypium hirsutum HOM05D005115 ORTHO05D005703 2.0e-40 169.9 204 56.4
CANSAT21G0870 Cannabis sativa HOM05D005115 ORTHO05D005703 2.6e-40 169.5 225 53.8
Atru.chr9.1972 Acer truncatum HOM05D005115 ORTHO05D005703 4.5e-40 168.7 179 56.4
Atru.chr9.1986 Acer truncatum HOM05D005115 ORTHO05D005703 4.5e-40 168.7 179 56.4
Nitab4.5_0007367g0090 Nicotiana tabacum HOM05D005115 ORTHO05D005703 4.5e-40 168.7 223 52.0
FvH4_5g04680 Fragaria vesca HOM05D005115 ORTHO05D005703 7.7e-40 167.9 204 57.4
Sc22g0004980 Simmondsia chinensis HOM05D005115 ORTHO05D005703 1.0e-39 167.5 201 54.7
Oeu055028.2 Olea europaea HOM05D005115 ORTHO05D005703 1.7e-39 166.8 244 48.8
CsaV3_4G006640 Cucumis sativus L. HOM05D005115 ORTHO05D005703 2.2e-39 166.4 176 62.5
Actinidia22166 Actinidia chinensis HOM05D005115 ORTHO05D005703 3.8e-39 165.6 188 56.9
TWI81G0084 Tripterygium wilfordii HOM05D005115 ORTHO05D005703 6.5e-39 164.9 212 53.8
TWI15G1136 Tripterygium wilfordii HOM05D005115 ORTHO05D005703 1.1e-38 164.1 202 56.4
LjContig00312_ERROPOS870357g0004531 Lotus japonicus HOM05D005115 ORTHO05D005703 1.4e-38 163.7 204 52.9
PSO135G0387 Papaver somniferum HOM05D005115 ORTHO05D005703 1.9e-38 163.3 208 55.8
CiPaw.12G082200 Carya illinoinensis HOM05D005115 ORTHO05D005703 5.5e-38 161.8 198 52.0
FAN13G0546 Fragaria x ananassa HOM05D005115 ORTHO05D005703 7.2e-38 161.4 204 55.4
FAN13G3196 Fragaria x ananassa HOM05D005115 ORTHO05D005703 7.2e-38 161.4 204 55.4
PGR031G1480 Punica granatum HOM05D005115 ORTHO05D005703 9.4e-38 161.0 171 57.9
Sed0016945 Sechium edule HOM05D005115 ORTHO05D005703 9.4e-38 161.0 206 54.4
Cpa.g.sc79.29 Carica papaya HOM05D005115 ORTHO05D005703 1.6e-37 160.2 206 55.8
Eucgr.D01748 Eucalyptus grandis HOM05D005115 ORTHO05D005703 2.1e-37 159.8 169 59.8
ECA240G1127 Erigeron canadensis HOM05D005115 ORTHO05D005703 2.7e-37 159.5 192 53.1
HanXRQChr03g0083441 Helianthus annuus HOM05D005115 ORTHO05D005703 4.7e-37 158.7 186 54.3
CDE04G3646 Ceratophyllum demersum HOM05D005115 ORTHO05D005703 6.1e-37 158.3 166 58.4
Ca_17482_v3 Cicer arietinum L. HOM05D005115 ORTHO05D005703 6.1e-37 158.3 209 51.2
Ca_17506_v3 Cicer arietinum L. HOM05D005115 ORTHO05D005703 6.1e-37 158.3 209 51.2
Medtr8g099425 Medicago truncatula HOM05D005115 ORTHO05D005703 6.1e-37 158.3 211 52.1
PGR042G1877 Punica granatum HOM05D005115 ORTHO05D005703 7.9e-37 157.9 171 56.7
TPR.G3414 Trifolium pratense HOM05D005115 ORTHO05D005703 3.0e-36 156.0 206 51.9
SalBow6G1704 Salvia bowleyana HOM05D005115 ORTHO05D005703 1.5e-35 153.7 258 45.7
SalBow8G0540 Salvia bowleyana HOM05D005115 ORTHO05D005703 1.5e-35 153.7 258 45.7
ECA240G3401 Erigeron canadensis HOM05D000003 ORTHO05D000004 3.3e-35 152.5 192 53.6
Manes.02G009400 Manihot esculenta HOM05D005115 ORTHO05D005703 4.4e-35 152.1 207 51.7
Haze_09072 Corylus avellana HOM05D005115 ORTHO05D005703 9.7e-35 151.0 297 40.7
HanXRQChr13g0415351 Helianthus annuus HOM05D005115 ORTHO05D005703 9.7e-35 151.0 158 59.5
TAR636G3146 Trochodendron aralioides HOM05D005115 ORTHO05D005703 3.7e-34 149.1 121 69.4
Potri.003G140700 Populus trichocarpa HOM05D005115 ORTHO05D005703 4.8e-34 148.7 201 52.2
Migut.A00633 Erythranthe guttata HOM05D005115 ORTHO05D005703 6.3e-34 148.3 188 55.3
Potri.001G090900 Populus trichocarpa HOM05D005115 ORTHO05D005703 1.4e-33 147.1 200 51.0
Lsat_1_v5_gn_6_83921 Lactuca sativa HOM05D005115 ORTHO05D005703 1.8e-33 146.7 192 52.1
RcHm_v2.0_Chr7g0194701 Rosa chinensis HOM05D005115 ORTHO05D005703 1.8e-33 146.7 191 55.5
CSS0002161 Camellia sinensis var. sinensis HOM05D005115 ORTHO05D005703 2.4e-33 146.4 111 73.0
CSS0007380 Camellia sinensis var. sinensis HOM05D005115 ORTHO05D005703 2.4e-33 146.4 111 73.0
Carub.0006s2972 Capsella rubella HOM05D005115 ORTHO05D005703 4.1e-33 145.6 182 52.2
Thhalv10028955m.g Eutrema salsugineum HOM05D005115 ORTHO05D005703 4.1e-33 145.6 192 51.0
Sabra01G0067300 Salix brachista HOM05D005115 ORTHO05D005703 5.3e-33 145.2 174 54.6
GSVIVG01019540001 Vitis vinifera HOM05D005115 ORTHO05D005703 1.2e-32 144.1 121 66.1
EL10Ac5g12921 Beta vulgaris HOM05D005115 ORTHO05D005703 5.9e-32 141.7 260 45.4
Hund14216 Selenicereus undatus HOM05D005115 ORTHO05D005703 1.3e-31 140.6 172 53.5
CDE03G0211 Ceratophyllum demersum HOM05D005115 ORTHO05D005703 2.9e-31 139.4 151 55.6
BcaC01g04648 Brassica carinata HOM05D005115 ORTHO05D005703 5.0e-31 138.7 182 52.2
Sp6g06500 Schrenkiella parvula HOM05D005115 ORTHO05D005703 1.5e-30 137.1 200 50.0
CARHR255630 Cardamine hirsuta HOM05D005115 ORTHO05D005703 3.2e-30 136.0 198 48.0
HPP92_002918 Vanilla planifolia HOM05D005115 ORTHO05D005703 9.4e-30 134.4 203 46.8
C03p35310 Brassica napus HOM05D005115 ORTHO05D005703 1.2e-29 134.0 184 50.5
Sopen08g004230 Solanum pennellii HOM05D005115 ORTHO05D005703 1.6e-29 133.7 114 65.8
MSTRG.25681 Avicennia marina HOM05D005115 ORTHO05D005703 2.1e-29 133.3 120 67.5
Sed0001802 Sechium edule HOM05D005115 ORTHO05D005703 2.1e-29 133.3 168 56.0
MELO3C016298.2 Cucumis melo HOM05D005115 ORTHO05D005703 2.7e-29 132.9 221 47.5
AUR62019846 Chenopodium quinoa HOM05D005115 ORTHO05D005703 3.6e-29 132.5 120 63.3
PGSC0003DMG400005793 Solanum tuberosum HOM05D005115 ORTHO05D005703 4.7e-29 132.1 114 65.8
THA.LOC104815118 Tarenaya hassleriana HOM05D005115 ORTHO05D005703 4.7e-29 132.1 207 48.3
BcaB01g02726 Brassica carinata HOM05D005115 ORTHO05D005703 8.0e-29 131.3 177 49.7
AT4G10970 Arabidopsis thaliana HOM05D005115 ORTHO05D005703 1.0e-28 131.0 201 45.8
CAN.G792.37 Capsicum annuum HOM05D005115 ORTHO05D005703 1.8e-28 130.2 110 67.3
unitig_0.g2839 Utricularia gibba HOM05D005115 ORTHO05D005703 1.8e-28 130.2 133 57.1
MBI07_g07104_MAGBIO Magnolia biondii HOM05D005115 ORTHO05D005703 1.1e-27 127.5 173 51.4
COL.COLO4_10710 Corchorus olitorius HOM05D005115 ORTHO05D005703 1.5e-27 127.1 120 60.0
AL6G45070 Arabidopsis lyrata HOM05D005115 ORTHO05D005703 3.3e-27 125.9 205 45.9
Psat7g026000 Pisum sativum HOM05D005115 ORTHO05D005703 4.8e-26 122.1 120 60.0
SGA_v2.0_scaffold144G35858 Striga asiatica HOM05D005474 ORTHO05D006551 1.1e-25 120.9 180 48.3
Hund11387 Selenicereus undatus HOM05D005115 ORTHO05D005703 2.4e-25 119.8 312 34.9
SEGI_32593 Sequoiadendron giganteum HOM05D005115 ORTHO05D005703 1.2e-24 117.5 180 48.3
Aa31LG9G11140 Aethionema arabicum HOM05D005115 ORTHO05D005703 3.5e-24 115.9 122 54.9
A03p29200 Brassica napus HOM05D005115 ORTHO05D005703 2.2e-23 113.2 229 42.4
MD06G1108200 Malus domestica HOM05D005115 ORTHO05D005703 3.2e-22 109.4 103 64.1
BolC3t15841H Brassica oleracea HOM05D005115 ORTHO05D005703 4.2e-22 109.0 115 56.5
Sp7g21880 Schrenkiella parvula HOM05D005115 ORTHO05D005703 2.1e-21 106.7 169 45.6
Lalb_Chr05g0211561 Lupinus albus HOM05D005115 ORTHO05D005703 8.0e-21 104.8 110 55.5
Zm00001eb178470 Zea mays HOM05D005115 ORTHO05D005703 3.0e-20 102.8 199 42.7
Thhalv10026287m.g Eutrema salsugineum HOM05D005115 ORTHO05D005703 4.0e-20 102.4 171 46.2
AT4G23910 Arabidopsis thaliana HOM05D005115 ORTHO05D005703 1.2e-19 100.9 172 45.3
Os08g0374200 Oryza sativa ssp. japonica HOM05D005115 ORTHO05D005703 1.5e-19 100.5 122 54.1
Carub.0007s1718 Capsella rubella HOM05D005115 ORTHO05D005703 2.6e-19 99.8 196 42.3
AL7G29420 Arabidopsis lyrata HOM05D005115 ORTHO05D005703 5.7e-19 98.6 172 44.8
SHI06967 Sapria himalayana HOM05D005115 ORTHO05D005703 7.5e-19 98.2 111 53.2
Sabra03G0101600 Salix brachista HOM05D000906 ORTHO05D000713 1.7e-18 97.1 276 33.3
BcaNung01098 Brassica carinata HOM05D005115 ORTHO05D005703 2.4e-17 93.2 179 40.8
A01p15220 Brassica napus HOM05D005115 ORTHO05D005703 3.1e-17 92.8 170 42.9
Zm00001eb042700 Zea mays HOM05D005115 ORTHO05D005703 3.5e-16 89.4 121 50.4
ATR0602G161 Amborella trichopoda HOM05D005115 ORTHO05D005703 5.0e-15 85.5 129 49.6
CARHR231320 Cardamine hirsuta HOM05D005115 ORTHO05D005703 5.0e-15 85.5 115 50.4
C01p19150 Brassica napus HOM05D005115 ORTHO05D005703 6.5e-15 85.1 114 50.9
Gohir.D12G237999 Gossypium hirsutum HOM05D005115 ORTHO05D005703 6.5e-15 85.1 122 44.3
Gohir.D12G238133 Gossypium hirsutum HOM05D005115 ORTHO05D005703 6.5e-15 85.1 122 44.3
Gorai.008G254900 Gossypium raimondii HOM05D005115 ORTHO05D005703 6.5e-15 85.1 122 44.3
BolC1t01841H Brassica oleracea HOM05D005115 ORTHO05D005703 2.5e-14 83.2 114 50.0
BcaC09g50931 Brassica carinata HOM05D005115 ORTHO05D005703 5.5e-14 82.0 131 45.8
arahy.Tifrunner.gnm1.ann1.ULQ1VN Arachis hypogaea HOM05D005115 ORTHO05D005703 2.1e-13 80.1 70 62.9
BraA01t01460Z Brassica rapa HOM05D005115 ORTHO05D005703 8.0e-13 78.2 113 46.9
DCAR_029907 Daucus carota HOM05D005115 ORTHO05D005703 8.3e-10 68.2 73 57.5
CSS0029994 Camellia sinensis var. sinensis HOM05D005115 ORTHO05D005703 1.4e-09 67.4 81 55.6
CSS0045410 Camellia sinensis var. sinensis HOM05D005115 ORTHO05D005703 1.4e-09 67.4 81 55.6
FAN04G1053 Fragaria x ananassa HOM05D005115 ORTHO05D005703 4.1e-09 65.9 69 58.0
Lsat_1_v5_gn_1_118201 Lactuca sativa HOM05D009751 ORTHO05D005703 1.9e-06 57.0 62 54.8
Oeu029936.1 Olea europaea HOM05D005115 ORTHO05D005703 1.9e-06 57.0 59 61.0
Lj4g0005021 Lotus japonicus HOM05D005115 ORTHO05D005703 4.3e-06 55.8 174 32.8
TAR636G1289 Trochodendron aralioides HOM05D005115 ORTHO05D005703 4.3e-06 55.8 96 42.7
Lsat_1_v5_gn_8_68541 Lactuca sativa HOM05D005115 ORTHO05D018183 5.6e-06 55.5 62 53.2


User provided reference genes

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