Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy7G00083 Aquilegia oxysepala HOM05D005085 ORTHO05D006135 0.0e+00 1601.3 771 100.0
TAR375G0122 Trochodendron aralioides HOM05D005085 ORTHO05D006135 0.0e+00 1162.5 772 72.4
MBI06_g46249_MAGBIO Magnolia biondii HOM05D005085 ORTHO05D006135 0.0e+00 1160.6 737 73.7
TAR629G3137 Trochodendron aralioides HOM05D005085 ORTHO05D006135 0.0e+00 1135.9 738 73.7
GSVIVG01038548001 Vitis vinifera HOM05D005085 ORTHO05D006135 0.0e+00 1125.2 746 71.7
CiPaw.05G196500 Carya illinoinensis HOM05D005085 ORTHO05D006135 0.0e+00 1117.8 780 68.1
Haze_00215 Corylus avellana HOM05D005085 ORTHO05D006135 0.0e+00 1117.1 785 68.5
Ciclev10018947m.g Citrus clementina HOM05D005085 ORTHO05D006135 0.0e+00 1115.5 779 68.7
Lju170A22T15 Lonicera japonica HOM05D005085 ORTHO05D006135 0.0e+00 1112.4 772 69.2
Hma1.2p1_0404F.1_g145430 Hydrangea macrophylla HOM05D005085 ORTHO05D006135 0.0e+00 1109.7 771 68.9
Thecc.03G198500 Theobroma cacao HOM05D005085 ORTHO05D006135 0.0e+00 1104.7 780 68.3
QL09p009347 Quercus lobata HOM05D005085 ORTHO05D006135 0.0e+00 1103.6 776 67.7
CSS0032106 Camellia sinensis var. sinensis HOM05D005085 ORTHO05D006135 0.0e+00 1099.7 776 67.9
Atru.chr12.2188 Acer truncatum HOM05D005085 ORTHO05D006135 0.0e+00 1095.5 779 67.9
COL.COLO4_16758 Corchorus olitorius HOM05D005085 ORTHO05D006135 0.0e+00 1095.5 780 67.9
Actinidia08648 Actinidia chinensis HOM05D005085 ORTHO05D006135 0.0e+00 1095.1 773 68.3
FvH4_7g31630 Fragaria vesca HOM05D005085 ORTHO05D006135 0.0e+00 1095.1 777 67.2
FAN06G1404 Fragaria x ananassa HOM05D005085 ORTHO05D006135 0.0e+00 1095.1 777 67.2
Cfa016227 Carpinus fangiana HOM05D005085 ORTHO05D006135 0.0e+00 1094.7 780 67.4
Nn1g00241 Nelumbo nucifera HOM05D005085 ORTHO05D006135 0.0e+00 1094.7 769 69.3
CSS0012677 Camellia sinensis var. sinensis HOM05D005085 ORTHO05D006135 0.0e+00 1094.3 775 68.1
PSO384G0679 Papaver somniferum HOM05D005085 ORTHO05D006135 0.0e+00 1093.6 777 67.3
FAN03G3191 Fragaria x ananassa HOM05D005085 ORTHO05D006135 0.0e+00 1092.4 782 67.1
Prupe.2G310400 Prunus persica HOM05D005085 ORTHO05D006135 0.0e+00 1089.7 782 68.8
Eucgr.K00374 Eucalyptus grandis HOM05D005085 ORTHO05D006135 0.0e+00 1088.6 773 67.5
MD07G1288900 Malus domestica HOM05D005085 ORTHO05D006135 0.0e+00 1088.6 779 68.0
RcHm_v2.0_Chr1g0380701 Rosa chinensis HOM05D005085 ORTHO05D006135 0.0e+00 1088.2 777 66.8
TWI23G0498 Tripterygium wilfordii HOM05D005085 ORTHO05D006135 0.0e+00 1087.4 782 67.5
CANSAT21G1132 Cannabis sativa HOM05D005085 ORTHO05D006135 0.0e+00 1087.0 769 68.5
Cc02_g01600 Coffea canephora HOM05D005085 ORTHO05D006135 0.0e+00 1085.9 738 69.2
FAN06G4927 Fragaria x ananassa HOM05D005085 ORTHO05D006135 0.0e+00 1085.1 777 67.1
FAN01G1488 Fragaria x ananassa HOM05D005085 ORTHO05D006135 0.0e+00 1083.2 782 66.8
Potri.015G013400 Populus trichocarpa HOM05D005085 ORTHO05D006135 0.0e+00 1082.0 779 66.9
Glyma.06G128600 Glycine max HOM05D005085 ORTHO05D006135 0.0e+00 1081.6 771 67.1
PSO135G0649 Papaver somniferum HOM05D005085 ORTHO05D006135 0.0e+00 1081.6 777 66.2
Potri.012G014900 Populus trichocarpa HOM05D005085 ORTHO05D006135 0.0e+00 1077.8 779 67.4
CDE04G2343 Ceratophyllum demersum HOM05D005085 ORTHO05D006135 0.0e+00 1077.0 737 68.7
ATR0602G298 Amborella trichopoda HOM05D005085 ORTHO05D006135 0.0e+00 1076.6 759 67.7
Lj1g0017393 Lotus japonicus HOM05D005085 ORTHO05D006135 0.0e+00 1075.1 770 66.6
Sabra15G0010900 Salix brachista HOM05D005085 ORTHO05D006135 5.3e-312 1073.5 779 66.2
EL10Ac3g05287 Beta vulgaris HOM05D005085 ORTHO05D006135 2.1e-311 1072.0 754 68.3
Sc19g0000870 Simmondsia chinensis HOM05D005085 ORTHO05D006135 7.9e-311 1070.1 776 66.5
Nitab4.5_0010146g0010 Nicotiana tabacum HOM05D005085 ORTHO05D006135 4.0e-310 1067.8 745 68.1
arahy.Tifrunner.gnm1.ann1.ZR5QI2 Arachis hypogaea HOM05D005085 ORTHO05D006135 1.5e-309 1065.8 771 65.6
Sopen03g023080 Solanum pennellii HOM05D005085 ORTHO05D006135 3.4e-309 1064.7 778 66.3
arahy.Tifrunner.gnm1.ann1.T9I2S7 Arachis hypogaea HOM05D005085 ORTHO05D006135 4.4e-309 1064.3 771 65.5
Rhsim03G0208500 Rhododendron simsii HOM05D005085 ORTHO05D006135 7.5e-309 1063.5 778 65.9
PGSC0003DMG400009126 Solanum tuberosum HOM05D005085 ORTHO05D006135 1.3e-308 1062.8 745 67.9
Nitab4.5_0005599g0010 Nicotiana tabacum HOM05D005085 ORTHO05D006135 3.7e-308 1061.2 745 67.9
PGR142G4232 Punica granatum HOM05D005085 ORTHO05D006135 3.7e-308 1061.2 777 65.4
Hund11663 Selenicereus undatus HOM05D005085 ORTHO05D006135 4.9e-308 1060.8 756 67.1
vmacro06534 Vaccinium macrocarpon HOM05D005085 ORTHO05D006135 6.4e-308 1060.4 778 65.8
Ah.07g205630 Amaranthus hybridus HOM05D005085 ORTHO05D006135 1.9e-307 1058.9 777 66.4
Solyc03g083330.3 Solanum lycopersicum HOM05D005085 ORTHO05D006135 4.1e-307 1057.7 777 65.6
CAN.G968.3 Capsicum annuum HOM05D005085 ORTHO05D006135 9.2e-307 1056.6 775 65.3
VMungo1309G2271 Vigna mungo HOM05D005085 ORTHO05D006135 2.0e-306 1055.4 771 64.9
Duzib068G1071 Durio zibethinus HOM05D005085 ORTHO05D006135 3.0e-305 1051.6 780 65.9
Phvul.009G052800 Phaseolus vulgaris HOM05D005085 ORTHO05D006135 3.0e-305 1051.6 771 65.0
Cpa.g.sc3.82 Carica papaya HOM05D005085 ORTHO05D006135 8.6e-305 1050.0 796 64.4
Gohir.A05G414800 Gossypium hirsutum HOM05D005085 ORTHO05D006135 4.3e-304 1047.7 780 65.5
MSTRG.27029 Avicennia marina HOM05D005085 ORTHO05D006135 2.8e-303 1045.0 770 65.1
DCAR_008919 Daucus carota HOM05D005085 ORTHO05D006135 1.1e-302 1043.1 755 64.9
Migut.F01031 Erythranthe guttata HOM05D005085 ORTHO05D006135 2.3e-302 1042.0 766 65.4
Duzib205G0228 Durio zibethinus HOM05D005085 ORTHO05D006135 1.2e-301 1039.6 714 69.5
Lalb_Chr08g0240261 Lupinus albus HOM05D005085 ORTHO05D006135 3.4e-301 1038.1 771 64.3
SalBow4G0231 Salvia bowleyana HOM05D005085 ORTHO05D006135 4.4e-301 1037.7 772 64.4
CsaV3_5G000500 Cucumis sativus L. HOM05D005085 ORTHO05D006135 3.7e-300 1034.6 779 64.1
Manes.01G183000 Manihot esculenta HOM05D005085 ORTHO05D006135 4.9e-300 1034.2 777 64.9
Nn3g18991 Nelumbo nucifera HOM05D005085 ORTHO05D006135 4.9e-300 1034.2 770 66.2
Oeu060983.2 Olea europaea HOM05D005085 ORTHO05D006135 1.4e-299 1032.7 797 62.7
Sabra12G0017000 Salix brachista HOM05D005085 ORTHO05D006135 1.9e-299 1032.3 779 65.2
Oeu037073.1 Olea europaea HOM05D005085 ORTHO05D006135 5.4e-299 1030.8 737 66.2
Sed0021974 Sechium edule HOM05D005085 ORTHO05D006135 3.0e-297 1025.0 756 64.7
FAN10G0692 Fragaria x ananassa HOM05D005085 ORTHO05D006135 6.6e-297 1023.8 782 63.9
FAN10G4178 Fragaria x ananassa HOM05D005085 ORTHO05D006135 6.6e-297 1023.8 782 63.9
MELO3C005886.2 Cucumis melo HOM05D005085 ORTHO05D006135 8.6e-297 1023.5 779 63.5
Psat5g078640 Pisum sativum HOM05D005085 ORTHO05D006135 1.9e-296 1022.3 772 62.8
Zm00001eb237090 Zea mays HOM05D005085 ORTHO05D006135 4.3e-296 1021.1 744 64.8
Gohir.1Z049319 Gossypium hirsutum HOM05D005085 ORTHO05D006135 2.8e-295 1018.5 780 64.7
Lsat_1_v5_gn_2_136081 Lactuca sativa HOM05D005085 ORTHO05D006135 2.8e-295 1018.5 767 64.3
Dinv35331 Davidia involucrata HOM05D005085 ORTHO05D006135 4.7e-295 1017.7 662 72.1
Medtr3g091420 Medicago truncatula HOM05D005085 ORTHO05D006135 1.2e-293 1013.1 749 63.2
HanXRQChr04g0100521 Helianthus annuus HOM05D005085 ORTHO05D006135 2.9e-292 1008.4 768 63.0
SGA_v2.0_scaffold192G40551 Striga asiatica HOM05D005085 ORTHO05D006135 5.4e-291 1004.2 762 64.7
TPR.G19373 Trifolium pratense HOM05D005085 ORTHO05D006135 1.2e-290 1003.0 802 60.6
Ca_16704_v3 Cicer arietinum L. HOM05D005085 ORTHO05D006135 1.7e-289 999.2 771 62.6
Migut.F00216 Erythranthe guttata HOM05D005085 ORTHO05D006135 3.0e-289 998.4 737 64.7
Actinidia34217 Actinidia chinensis HOM05D005085 ORTHO05D006135 3.9e-289 998.0 714 67.8
SEGI_15573 Sequoiadendron giganteum HOM05D005085 ORTHO05D006135 3.9e-289 998.0 747 63.3
ClCG01G000430 Citrullus lanatus HOM05D005085 ORTHO05D006135 2.5e-288 995.3 819 60.3
THA.LOC104814927 Tarenaya hassleriana HOM05D005085 ORTHO05D006135 1.4e-286 989.6 756 64.2
Sp2g23110 Schrenkiella parvula HOM05D005085 ORTHO05D006135 1.7e-284 982.6 752 64.2
Sed0008428 Sechium edule HOM05D005085 ORTHO05D006135 3.9e-281 971.5 779 61.6
AL6G35670 Arabidopsis lyrata HOM05D005085 ORTHO05D006135 4.3e-280 968.0 748 63.5
AT5G24260 Arabidopsis thaliana HOM05D005085 ORTHO05D006135 3.1e-278 961.8 753 62.8
Carub.0006s2201 Capsella rubella HOM05D005085 ORTHO05D006135 6.9e-278 960.7 759 63.0
ECA238G3029 Erigeron canadensis HOM05D005085 ORTHO05D006135 1.5e-277 959.5 745 63.0
BcaC04g23536 Brassica carinata HOM05D005085 ORTHO05D006135 2.2e-276 955.7 752 62.1
BolC9t53643H Brassica oleracea HOM05D005085 ORTHO05D006135 2.2e-276 955.7 752 62.1
Mapoly0005s0073 Marchantia polymorpha HOM05D005085 ORTHO05D006135 2.9e-276 955.3 785 58.2
Aa31LG11G3490 Aethionema arabicum HOM05D005085 ORTHO05D006135 6.4e-276 954.1 749 61.7
SMO334G0022 Selaginella moellendorffii HOM05D005085 ORTHO05D006135 1.1e-275 953.4 758 61.1
Thhalv10003701m.g Eutrema salsugineum HOM05D005085 ORTHO05D006135 1.4e-275 953.0 750 62.5
BcaB04g19831 Brassica carinata HOM05D005085 ORTHO05D006135 1.9e-275 952.6 750 62.3
C09p07310 Brassica napus HOM05D005085 ORTHO05D006135 1.9e-275 952.6 752 61.8
A09p06550 Brassica napus HOM05D005085 ORTHO05D006135 2.3e-273 945.7 748 61.8
BraA09t36300Z Brassica rapa HOM05D005085 ORTHO05D006135 2.5e-272 942.2 748 61.8
Pp3c3_30620 Physcomitrium patens HOM05D005085 ORTHO05D006135 4.0e-270 934.9 742 61.1
AUR62006093 Chenopodium quinoa HOM05D005085 ORTHO05D006135 1.3e-268 929.9 647 68.9
Pp3c8_9480 Physcomitrium patens HOM05D005085 ORTHO05D006135 9.3e-267 923.7 758 59.0
Peaxi162Scf00717g00321 Petunia axillaris HOM05D005085 ORTHO05D006135 7.9e-266 920.6 746 61.0
MBI06_g41630_MAGBIO Magnolia biondii HOM05D005085 ORTHO05D006135 1.3e-265 919.8 714 63.7
AUR62019399 Chenopodium quinoa HOM05D005085 ORTHO05D006135 1.3e-263 913.3 738 61.7
Manes.02G143100 Manihot esculenta HOM05D005085 ORTHO05D006135 8.2e-263 910.6 596 71.6
Glyma.04G236000 Glycine max HOM05D005085 ORTHO05D006135 1.3e-255 886.7 596 69.3
Os02g0290600 Oryza sativa ssp. japonica HOM05D005085 ORTHO05D006135 1.5e-253 879.8 598 67.6
Gorai.012G002400 Gossypium raimondii HOM05D005085 ORTHO05D006135 8.5e-244 847.4 552 71.6
Gohir.D04G001366 Gossypium hirsutum HOM05D005085 ORTHO05D006135 4.1e-238 828.6 546 70.5
SEGI_29845 Sequoiadendron giganteum HOM05D005085 ORTHO05D006135 8.5e-236 820.8 557 67.9
AagrBONN_evm.TU.Sc2ySwM_368.3337 Anthoceros agrestis HOM05D005085 ORTHO05D006135 3.2e-227 792.3 572 64.2
Oeu060984.1 Olea europaea HOM05D005085 ORTHO05D006135 2.3e-217 759.6 573 63.0
HPP92_002922 Vanilla planifolia HOM05D005085 ORTHO05D006135 2.8e-210 736.1 553 64.7
CBR_g26168 Chara braunii HOM05D005085 ORTHO05D006135 6.1e-210 734.9 602 57.0
CARHR189270 Cardamine hirsuta HOM05D005085 ORTHO05D006135 8.3e-199 698.0 567 60.7
SEGI_31502 Sequoiadendron giganteum HOM05D005085 ORTHO05D006135 2.3e-196 689.9 601 56.4
PRCOL_00001990 Prasinoderma coloniale HOM05D005085 ORTHO05D006135 2.2e-191 673.3 788 45.2
MCO02G195 Micromonas commoda HOM05D005085 ORTHO05D006135 4.8e-138 496.1 780 38.1
SEGI_36069 Sequoiadendron giganteum HOM05D005085 ORTHO05D006135 6.3e-122 442.6 383 56.9
CARHR189280 Cardamine hirsuta HOM05D005085 ORTHO05D006135 2.8e-69 267.7 187 69.5
Lj1A1019T47 Lonicera japonica HOM05D005085 ORTHO05D006135 6.2e-69 266.5 265 55.1
BcaB04g18355 Brassica carinata HOM05D005085 ORTHO05D006135 3.2e-57 227.6 222 55.0
HPP92_028640 Vanilla planifolia HOM05D005085 ORTHO05D006135 5.4e-41 173.7 263 45.2
Cfa026592 Carpinus fangiana HOM05D005085 ORTHO05D006135 1.6e-40 172.2 622 25.1
Cfa024188 Carpinus fangiana HOM05D005085 ORTHO05D006135 6.7e-39 166.8 624 24.0
Lj1C1017G3 Lonicera japonica HOM05D005085 ORTHO05D006135 1.3e-29 136.0 243 36.6
SEGI_01874 Sequoiadendron giganteum HOM05D005085 ORTHO05D006135 2.3e-23 115.2 118 45.8
HPP92_002923 Vanilla planifolia HOM05D005085 ORTHO05D006135 1.3e-18 99.4 84 61.9
HPP92_002921 Vanilla planifolia HOM05D005085 ORTHO05D006135 9.4e-17 93.2 52 82.7
HPP92_028641 Vanilla planifolia HOM05D005085 ORTHO05D006135 1.8e-15 89.0 120 44.2
Ah.03g137970 Amaranthus hybridus HOM05D005085 ORTHO05D006135 2.5e-14 85.1 179 36.3
Gohir.D02G140050 Gossypium hirsutum HOM05D003289 ORTHO05D004594 7.4e-14 83.6 64 64.1
Gorai.005G156700 Gossypium raimondii HOM05D003289 ORTHO05D004594 9.7e-14 83.2 64 64.1
Gohir.D10G185350 Gossypium hirsutum HOM05D005085 ORTHO05D006135 1.7e-13 82.4 46 76.1
Gorai.011G207800 Gossypium raimondii HOM05D005085 ORTHO05D006135 1.7e-13 82.4 46 76.1
MD01G1219200 Malus domestica HOM05D005085 ORTHO05D006135 2.8e-13 81.6 65 61.5
AagrBONN_evm.TU.Sc2ySwM_228.3095 Anthoceros agrestis HOM05D003475 ORTHO05D026663 4.5e-11 74.3 261 23.8
Pp3c20_7850 Physcomitrium patens HOM05D003475 ORTHO05D026663 4.5e-11 74.3 275 22.9
CBR_g23970 Chara braunii HOM05D003475 ORTHO05D004155 9.4e-09 66.6 233 25.8
Lj1C1016T11 Lonicera japonica HOM05D005085 ORTHO05D006135 3.6e-08 64.7 39 69.2
Gorai.004G093300 Gossypium raimondii HOM05D001074 ORTHO05D001188 1.5e-06 59.3 34 70.6


User provided reference genes

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