Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy7G00063 Aquilegia oxysepala HOM05D005092 ORTHO05D006073 8.5e-103 377.1 201 100.0
TAR425G0003 Trochodendron aralioides HOM05D005092 ORTHO05D006073 5.5e-70 268.1 211 70.1
PSO135G0789 Papaver somniferum HOM05D005092 ORTHO05D006073 3.4e-67 258.8 199 70.4
PSO384G1727 Papaver somniferum HOM05D005092 ORTHO05D006073 3.4e-67 258.8 203 70.0
Gorai.008G256400 Gossypium raimondii HOM05D005092 ORTHO05D006073 8.3e-66 254.2 212 63.7
Thecc.03G302300 Theobroma cacao HOM05D005092 ORTHO05D006073 8.3e-66 254.2 208 64.4
Gohir.D12G239300 Gossypium hirsutum HOM05D005092 ORTHO05D006073 1.1e-65 253.8 212 63.7
CSS0040137 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 1.4e-65 253.4 215 66.0
Nn3g18958 Nelumbo nucifera HOM05D005092 ORTHO05D006073 2.4e-65 252.7 209 66.0
Cc08_g16360 Coffea canephora HOM05D005092 ORTHO05D006073 5.4e-65 251.5 153 79.1
Gohir.A12G238200 Gossypium hirsutum HOM05D005092 ORTHO05D006073 1.2e-64 250.4 212 62.7
Dinv37500 Davidia involucrata HOM05D005092 ORTHO05D006073 1.6e-64 250.0 151 82.1
DCAR_006514 Daucus carota HOM05D005092 ORTHO05D006073 5.9e-64 248.1 170 74.7
AUR62007009 Chenopodium quinoa HOM05D005092 ORTHO05D006073 7.7e-64 247.7 154 79.9
MBI07_g24777_MAGBIO Magnolia biondii HOM05D005092 ORTHO05D006073 7.7e-64 247.7 196 68.9
AUR62019873 Chenopodium quinoa HOM05D005092 ORTHO05D006073 1.0e-63 247.3 154 80.5
COL.COLO4_10743 Corchorus olitorius HOM05D005092 ORTHO05D006073 1.3e-63 246.9 211 60.2
HanXRQChr17g0535041 Helianthus annuus HOM05D005092 ORTHO05D006073 3.8e-63 245.4 153 77.8
EL10Ac5g12949 Beta vulgaris HOM05D005092 ORTHO05D006073 6.6e-63 244.6 154 81.2
MD14G1132700 Malus domestica HOM05D005092 ORTHO05D006073 1.9e-62 243.0 205 64.4
CiPaw.11G117500 Carya illinoinensis HOM05D005092 ORTHO05D006073 2.5e-62 242.7 153 77.8
Lsat_1_v5_gn_6_9541 Lactuca sativa HOM05D005092 ORTHO05D006073 2.5e-62 242.7 155 77.4
MD06G1111400 Malus domestica HOM05D005092 ORTHO05D006073 3.3e-62 242.3 156 76.9
Nitab4.5_0004515g0010 Nicotiana tabacum HOM05D005092 ORTHO05D006073 3.3e-62 242.3 153 77.8
Sed0021119 Sechium edule HOM05D005092 ORTHO05D006073 3.3e-62 242.3 157 75.2
CDE02G0126 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 4.2e-62 241.9 201 63.7
Dinv38813 Davidia involucrata HOM05D005092 ORTHO05D006073 4.2e-62 241.9 193 64.8
QL02p029645 Quercus lobata HOM05D005092 ORTHO05D006073 4.2e-62 241.9 152 77.0
Cpa.g.sc15.7 Carica papaya HOM05D005092 ORTHO05D006073 5.5e-62 241.5 153 78.4
Medtr8g099720 Medicago truncatula HOM05D005092 ORTHO05D006073 5.5e-62 241.5 188 67.0
Peaxi162Scf00117g00912 Petunia axillaris HOM05D005092 ORTHO05D006073 5.5e-62 241.5 205 62.9
Potri.001G088300 Populus trichocarpa HOM05D005092 ORTHO05D006073 5.5e-62 241.5 209 62.7
Glyma.05G218800 Glycine max HOM05D005092 ORTHO05D006073 7.2e-62 241.1 168 73.8
HanXRQChr07g0190751 Helianthus annuus HOM05D005092 ORTHO05D006073 9.5e-62 240.7 174 71.8
Sp2g00240 Schrenkiella parvula HOM05D005092 ORTHO05D006073 9.5e-62 240.7 155 74.8
THA.LOC104809322 Tarenaya hassleriana HOM05D005092 ORTHO05D006073 9.5e-62 240.7 172 72.1
Glyma.08G024900 Glycine max HOM05D005092 ORTHO05D006073 1.2e-61 240.4 208 62.5
CARHR046440 Cardamine hirsuta HOM05D005092 ORTHO05D006073 1.6e-61 240.0 156 73.7
Phvul.002G300600 Phaseolus vulgaris HOM05D005092 ORTHO05D006073 1.6e-61 240.0 168 72.6
Psat7g023960 Pisum sativum HOM05D005092 ORTHO05D006073 1.6e-61 240.0 164 72.0
BcaB07g31497 Brassica carinata HOM05D005092 ORTHO05D006073 2.8e-61 239.2 152 75.7
Thhalv10023690m.g Eutrema salsugineum HOM05D005092 ORTHO05D006073 2.8e-61 239.2 155 74.2
Hma1.2p1_0440F.1_g153550 Hydrangea macrophylla HOM05D005092 ORTHO05D006073 2.8e-61 239.2 195 65.1
Lj4g0014821 Lotus japonicus HOM05D005092 ORTHO05D006073 3.6e-61 238.8 154 75.3
Prupe.5G124200 Prunus persica HOM05D005092 ORTHO05D006073 3.6e-61 238.8 204 64.2
AT1G64510 Arabidopsis thaliana HOM05D005092 ORTHO05D006073 4.7e-61 238.4 156 73.7
Aa31LG2G1490 Aethionema arabicum HOM05D005092 ORTHO05D006073 6.1e-61 238.0 156 74.4
AL2G10290 Arabidopsis lyrata HOM05D005092 ORTHO05D006073 6.1e-61 238.0 156 74.4
A09p14390 Brassica napus HOM05D005092 ORTHO05D006073 6.1e-61 238.0 154 74.7
Sabra01G0064600 Salix brachista HOM05D005092 ORTHO05D006073 8.0e-61 237.7 207 60.4
BcaB07g31470 Brassica carinata HOM05D005092 ORTHO05D006073 1.0e-60 237.3 210 59.0
BcaC04g22575 Brassica carinata HOM05D005092 ORTHO05D006073 1.0e-60 237.3 150 76.0
C09p17310 Brassica napus HOM05D005092 ORTHO05D006073 1.0e-60 237.3 150 76.0
C09p17730 Brassica napus HOM05D005092 ORTHO05D006073 1.0e-60 237.3 150 76.0
BolC9t54633H Brassica oleracea HOM05D005092 ORTHO05D006073 1.0e-60 237.3 150 76.0
BolC9t54667H Brassica oleracea HOM05D005092 ORTHO05D006073 1.0e-60 237.3 150 76.0
BraA09t37086Z Brassica rapa HOM05D005092 ORTHO05D006073 1.0e-60 237.3 154 74.7
ATR0602G266 Amborella trichopoda HOM05D005092 ORTHO05D006073 1.4e-60 236.9 152 77.0
Cfa011974 Carpinus fangiana HOM05D005092 ORTHO05D006073 1.4e-60 236.9 204 62.3
Ca_17461_v3 Cicer arietinum L. HOM05D005092 ORTHO05D006073 1.4e-60 236.9 154 73.4
CDE08G0689 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 2.3e-60 236.1 209 64.1
Manes.01G045210 Manihot esculenta HOM05D005092 ORTHO05D006073 3.0e-60 235.7 158 73.4
Actinidia04188 Actinidia chinensis HOM05D005092 ORTHO05D006073 4.0e-60 235.3 153 75.8
arahy.Tifrunner.gnm1.ann1.CJJ4VI Arachis hypogaea HOM05D005092 ORTHO05D006073 4.0e-60 235.3 155 75.5
A09p14650 Brassica napus HOM05D005092 ORTHO05D006073 4.0e-60 235.3 207 59.9
BraA09t37111Z Brassica rapa HOM05D005092 ORTHO05D006073 4.0e-60 235.3 207 59.9
CANSAT21G1519 Cannabis sativa HOM05D005092 ORTHO05D006073 4.0e-60 235.3 154 76.0
Carub.0002s0024 Capsella rubella HOM05D005092 ORTHO05D006073 5.2e-60 235.0 153 73.9
CDE02G4008 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 5.2e-60 235.0 171 71.3
RcHm_v2.0_Chr7g0186131 Rosa chinensis HOM05D005092 ORTHO05D006073 6.8e-60 234.6 154 76.6
arahy.Tifrunner.gnm1.ann1.99ISIC Arachis hypogaea HOM05D005092 ORTHO05D006073 8.9e-60 234.2 155 74.8
Nitab4.5_0002367g0080 Nicotiana tabacum HOM05D005092 ORTHO05D006073 8.9e-60 234.2 155 75.5
Ah.07g197620 Amaranthus hybridus HOM05D005092 ORTHO05D006073 1.5e-59 233.4 154 75.3
PGSC0003DMG400012136 Solanum tuberosum HOM05D005092 ORTHO05D006073 1.5e-59 233.4 203 63.5
Haze_09102 Corylus avellana HOM05D005092 ORTHO05D006073 2.0e-59 233.0 204 61.8
CSS0048233 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 3.4e-59 232.3 204 64.2
Sc07g0010130 Simmondsia chinensis HOM05D005092 ORTHO05D006073 3.4e-59 232.3 151 76.8
Solyc08g082690.2 Solanum lycopersicum HOM05D005092 ORTHO05D006073 3.4e-59 232.3 203 63.1
Sopen08g030910 Solanum pennellii HOM05D005092 ORTHO05D006073 3.4e-59 232.3 203 63.1
Ah.12g052820 Amaranthus hybridus HOM05D005092 ORTHO05D006073 4.4e-59 231.9 154 74.7
FvH4_5g11660 Fragaria vesca HOM05D005092 ORTHO05D006073 4.4e-59 231.9 198 63.6
FAN18G1279 Fragaria x ananassa HOM05D005092 ORTHO05D006073 4.4e-59 231.9 198 63.6
FAN18G3046 Fragaria x ananassa HOM05D005092 ORTHO05D006073 4.4e-59 231.9 198 63.6
Duzib068G1058 Durio zibethinus HOM05D005092 ORTHO05D006073 5.7e-59 231.5 154 74.7
Nitab4.5_0006302g0010 Nicotiana tabacum HOM05D005092 ORTHO05D006073 5.7e-59 231.5 202 62.9
CSS0038140 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 7.5e-59 231.1 204 63.7
FAN08G0879 Fragaria x ananassa HOM05D005092 ORTHO05D006073 7.5e-59 231.1 198 64.1
FAN04G2351 Fragaria x ananassa HOM05D005092 ORTHO05D006073 1.3e-58 230.3 154 75.3
CSS0022378 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 1.7e-58 229.9 204 63.2
Ciclev10022161m.g Citrus clementina HOM05D005092 ORTHO05D006073 1.7e-58 229.9 214 60.7
FAN13G0604 Fragaria x ananassa HOM05D005092 ORTHO05D006073 1.7e-58 229.9 198 63.6
Duzib068G1375 Durio zibethinus HOM05D005092 ORTHO05D006073 2.2e-58 229.6 209 60.3
Duzib068G0950 Durio zibethinus HOM05D005092 ORTHO05D006073 2.8e-58 229.2 153 73.9
Lalb_Chr09g0332211 Lupinus albus HOM05D005092 ORTHO05D006073 7.0e-57 224.6 156 72.4
Atru.chr9.1939 Acer truncatum HOM05D005092 ORTHO05D006073 9.2e-57 224.2 210 58.1
Lj2A163T69 Lonicera japonica HOM05D005092 ORTHO05D006073 2.0e-56 223.0 156 71.2
Actinidia22183 Actinidia chinensis HOM05D005092 ORTHO05D006073 2.7e-56 222.6 153 72.5
TWI81G0988 Tripterygium wilfordii HOM05D005092 ORTHO05D006073 2.7e-56 222.6 152 73.0
TPR.G3401 Trifolium pratense HOM05D005092 ORTHO05D006073 3.8e-55 218.8 173 65.3
SalBow8G0392 Salvia bowleyana HOM05D005092 ORTHO05D006073 8.6e-55 217.6 154 68.8
Rhsim02G0248400 Rhododendron simsii HOM05D005092 ORTHO05D006073 1.9e-54 216.5 162 69.8
Lj8A204G63 Lonicera japonica HOM05D005092 ORTHO05D006073 2.5e-54 216.1 203 59.1
BcaC04g22614 Brassica carinata HOM05D005092 ORTHO05D006073 1.6e-53 213.4 138 73.2
CSS0033480 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 2.1e-53 213.0 224 57.6
PGR031G0045 Punica granatum HOM05D005092 ORTHO05D006073 2.1e-53 213.0 206 54.9
HanXRQChr17g0534641 Helianthus annuus HOM05D005092 ORTHO05D006073 1.0e-52 210.7 119 83.2
Nitab4.5_0015800g0020 Nicotiana tabacum HOM05D005092 ORTHO05D006073 1.0e-52 210.7 202 58.9
MSTRG.14949 Avicennia marina HOM05D005092 ORTHO05D006073 1.4e-52 210.3 152 69.7
Migut.M00752 Erythranthe guttata HOM05D005092 ORTHO05D006073 8.9e-52 207.6 170 64.1
MELO3C005759.2 Cucumis melo HOM05D005092 ORTHO05D006073 2.0e-51 206.5 154 66.9
Lalb_Chr14g0362701 Lupinus albus HOM05D005092 ORTHO05D006073 2.2e-50 203.0 158 66.5
unitig_62.g23053 Utricularia gibba HOM05D005092 ORTHO05D006073 3.7e-50 202.2 154 67.5
CsaV3_5G001930 Cucumis sativus L. HOM05D005092 ORTHO05D006073 1.9e-49 199.9 147 67.3
HPP92_003891 Vanilla planifolia HOM05D005092 ORTHO05D006073 2.7e-48 196.1 153 65.4
SGA_v2.0_scaffold34G13767 Striga asiatica HOM05D005092 ORTHO05D006073 4.6e-48 195.3 117 76.1
HPP92_003874 Vanilla planifolia HOM05D003037 ORTHO05D003659 6.6e-47 191.4 155 63.2
CAN.G567.28 Capsicum annuum HOM05D005092 ORTHO05D006073 5.6e-46 188.3 259 45.2
Hund11375 Selenicereus undatus HOM05D005092 ORTHO05D006073 7.3e-46 188.0 154 60.4
Peaxi162Scf00074g00540 Petunia axillaris HOM05D005092 ORTHO05D006073 4.7e-45 185.3 161 61.5
Migut.M00753 Erythranthe guttata HOM05D005092 ORTHO05D006073 8.0e-45 184.5 153 64.1
Os03g0843400 Oryza sativa ssp. japonica HOM05D005092 ORTHO05D006073 5.2e-44 181.8 118 73.7
SalBow7G2047 Salvia bowleyana HOM05D005092 ORTHO05D006073 5.2e-44 181.8 149 62.4
SalBow7G3059 Salvia bowleyana HOM05D005092 ORTHO05D006073 5.2e-44 181.8 149 62.4
GSVIVG01019593001 Vitis vinifera HOM05D005092 ORTHO05D006073 8.9e-44 181.0 102 85.3
Zm00001eb064130 Zea mays HOM05D005092 ORTHO05D006073 2.0e-43 179.9 175 54.9
vmacro11536 Vaccinium macrocarpon HOM05D005092 ORTHO05D006073 2.9e-42 176.0 160 59.4
ECA233G5643 Erigeron canadensis HOM05D005092 ORTHO05D006073 1.0e-39 167.5 114 71.9
Atru.chr10.1577 Acer truncatum HOM05D005092 ORTHO05D006073 1.8e-36 156.8 93 76.3
Pp3c9_9180 Physcomitrium patens HOM05D005092 ORTHO05D006073 1.8e-36 156.8 147 55.1
Mapoly0115s0060 Marchantia polymorpha HOM05D005092 ORTHO05D006073 3.1e-36 156.0 146 52.7
Pp3c15_17560 Physcomitrium patens HOM05D005092 ORTHO05D006073 3.1e-36 156.0 147 55.1
CBR_g45689 Chara braunii HOM05D005092 ORTHO05D006073 4.9e-34 148.7 121 57.9
Sabra03G0103200 Salix brachista HOM05D005092 ORTHO05D006073 1.6e-32 143.7 172 47.7
SMO141G0012 Selaginella moellendorffii HOM05D005092 ORTHO05D006073 1.6e-32 143.7 106 60.4
Eucgr.D01771 Eucalyptus grandis HOM05D005092 ORTHO05D006073 3.5e-32 142.5 81 82.7
AagrBONN_evm.TU.Sc2ySwM_117.1171 Anthoceros agrestis HOM05D005092 ORTHO05D006073 1.3e-31 140.6 112 58.9
SEGI_34901 Sequoiadendron giganteum HOM05D005092 ORTHO05D006073 3.9e-31 139.0 148 50.0
Nn1g00282 Nelumbo nucifera HOM05D005092 ORTHO05D006073 6.4e-26 121.7 130 56.9
vmacro22558 Vaccinium macrocarpon HOM05D005092 ORTHO05D006073 2.4e-25 119.8 80 72.5
CSS0046261 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 3.2e-25 119.4 67 80.6
CSS0048158 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 3.2e-25 119.4 67 80.6
ClCG01G001790 Citrullus lanatus HOM05D005092 ORTHO05D006073 1.6e-16 90.5 83 56.6
Oeu061337.1 Olea europaea HOM05D005092 ORTHO05D006073 6.0e-16 88.6 71 64.8
A01p35480 Brassica napus HOM05D005092 ORTHO05D006073 9.6e-14 81.3 50 72.0
HanXRQChr07g0190051 Helianthus annuus HOM05D005092 ORTHO05D006073 3.6e-13 79.3 150 38.0
A04p11060 Brassica napus HOM05D023372 ORTHO05D024533 1.0e-07 61.2 38 76.3


User provided reference genes

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