Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy7G00060 Aquilegia oxysepala HOM05D004845 ORTHO05D005957 0.0e+00 2173.7 1253 100.0
TAR629G3185 Trochodendron aralioides HOM05D004845 ORTHO05D005957 8.5e-286 987.6 1289 54.1
Nn1g08771 Nelumbo nucifera HOM05D004845 ORTHO05D005957 3.3e-261 906.0 1207 52.4
Dinv30397 Davidia involucrata HOM05D004845 ORTHO05D005957 4.9e-217 759.2 1286 46.4
Dinv37932 Davidia involucrata HOM05D004845 ORTHO05D005957 2.7e-215 753.4 1298 46.2
QL05p015844 Quercus lobata HOM05D004845 ORTHO05D005957 1.8e-214 750.7 1266 46.8
Cfa003605 Carpinus fangiana HOM05D004845 ORTHO05D005957 1.7e-201 707.6 1212 46.5
Duzib160G0801 Durio zibethinus HOM05D004845 ORTHO05D005957 3.3e-197 693.3 1256 43.6
Thecc.06G108000 Theobroma cacao HOM05D004845 ORTHO05D005957 1.6e-196 691.0 1268 44.2
Prupe.3G052500 Prunus persica HOM05D004845 ORTHO05D005957 2.8e-196 690.3 1219 45.3
Atru.chr1.3636 Acer truncatum HOM05D004845 ORTHO05D005957 2.1e-191 674.1 1242 44.4
CiPaw.02G142000 Carya illinoinensis HOM05D004845 ORTHO05D005957 2.7e-191 673.7 1295 43.9
PSO170G6909 Papaver somniferum HOM05D004845 ORTHO05D005957 1.8e-190 671.0 1279 45.8
Gohir.A05G133700 Gossypium hirsutum HOM05D004845 ORTHO05D005957 8.8e-190 668.7 1258 43.6
Gohir.D05G135700 Gossypium hirsutum HOM05D004845 ORTHO05D005957 1.1e-189 668.3 1259 43.4
RcHm_v2.0_Chr2g0142521 Rosa chinensis HOM05D004845 ORTHO05D005957 2.4e-187 660.6 1248 43.2
Gorai.009G139700 Gossypium raimondii HOM05D004845 ORTHO05D005957 1.2e-186 658.3 1260 43.4
FAN02G0586 Fragaria x ananassa HOM05D004845 ORTHO05D005957 1.1e-181 641.7 1248 42.5
FvH4_6g32970 Fragaria vesca HOM05D004845 ORTHO05D005957 1.5e-181 641.3 1248 42.9
MD09G1196000 Malus domestica HOM05D004845 ORTHO05D005957 6.3e-180 636.0 1259 42.0
Potri.003G033100 Populus trichocarpa HOM05D004845 ORTHO05D005957 6.3e-180 636.0 1274 42.1
FAN14G1946 Fragaria x ananassa HOM05D004845 ORTHO05D005957 7.0e-179 632.5 1245 42.5
Rhsim08G0231600 Rhododendron simsii HOM05D004845 ORTHO05D005957 2.2e-177 627.5 1240 42.8
FAN09G4600 Fragaria x ananassa HOM05D004845 ORTHO05D005957 1.5e-176 624.8 1248 42.9
CANSAT56G3316 Cannabis sativa HOM05D004845 ORTHO05D005957 1.9e-176 624.4 1207 42.9
Duzib235G0635 Durio zibethinus HOM05D004845 ORTHO05D005957 3.2e-176 623.6 1298 42.4
vmacro18819 Vaccinium macrocarpon HOM05D004845 ORTHO05D005957 1.4e-174 618.2 1245 43.4
GSVIVG01016889001 Vitis vinifera HOM05D004845 ORTHO05D005957 2.2e-172 610.9 1248 39.5
Glyma.07G012400 Glycine max HOM05D004845 ORTHO05D005957 2.8e-172 610.5 1246 42.1
Sabra03G0019000 Salix brachista HOM05D004845 ORTHO05D005957 1.6e-170 604.7 1263 41.6
Glyma.08G196100 Glycine max HOM05D004845 ORTHO05D005957 3.5e-170 603.6 1250 42.1
Ciclev10024729m.g Citrus clementina HOM05D004845 ORTHO05D005957 1.3e-169 601.7 1256 42.8
DCAR_026375 Daucus carota HOM05D004845 ORTHO05D005957 2.2e-169 600.9 1214 40.9
MELO3C013040.2 Cucumis melo HOM05D004845 ORTHO05D005957 5.5e-168 596.3 1244 42.0
arahy.Tifrunner.gnm1.ann1.JSQ5P9 Arachis hypogaea HOM05D004845 ORTHO05D005957 4.0e-166 590.1 1215 41.4
CsaV3_3G044010 Cucumis sativus L. HOM05D004845 ORTHO05D005957 4.4e-165 586.6 1242 41.9
Sed0014548 Sechium edule HOM05D004845 ORTHO05D005957 4.4e-165 586.6 1250 41.8
Manes.04G137600 Manihot esculenta HOM05D004845 ORTHO05D005957 5.7e-165 586.3 1229 42.0
Cc04_g02180 Coffea canephora HOM05D004845 ORTHO05D005957 1.7e-164 584.7 1209 42.4
ClCG07G013620 Citrullus lanatus HOM05D004845 ORTHO05D005957 3.5e-162 577.0 1240 41.1
Medtr8g015620 Medicago truncatula HOM05D004845 ORTHO05D005957 1.5e-160 571.6 1209 40.5
arahy.Tifrunner.gnm1.ann1.7F0ZFP Arachis hypogaea HOM05D004845 ORTHO05D005957 3.2e-160 570.5 1244 40.5
MSTRG.22604 Avicennia marina HOM05D004845 ORTHO05D005957 3.2e-160 570.5 1239 40.7
MD17G1176700 Malus domestica HOM05D004845 ORTHO05D005957 3.6e-159 567.0 1212 41.2
TWI31G1049 Tripterygium wilfordii HOM05D004845 ORTHO05D005957 1.0e-158 565.5 1291 40.2
Ca_23299_v3 Cicer arietinum L. HOM05D004845 ORTHO05D005957 1.8e-155 554.7 1208 39.9
FAN05G2503 Fragaria x ananassa HOM05D004845 ORTHO05D005957 2.7e-154 550.8 1398 36.8
Hund07666 Selenicereus undatus HOM05D004845 ORTHO05D005957 2.9e-153 547.4 1234 41.2
Peaxi162Scf00038g01322 Petunia axillaris HOM05D004845 ORTHO05D005957 2.8e-151 540.8 1310 39.2
Sed0023831 Sechium edule HOM05D004845 ORTHO05D005957 1.4e-150 538.5 1221 40.8
Lj3g0006882 Lotus japonicus HOM05D004845 ORTHO05D005957 1.7e-148 531.6 1212 38.6
Migut.I01002 Erythranthe guttata HOM05D004845 ORTHO05D005957 2.2e-148 531.2 1270 39.0
Phvul.010G141800 Phaseolus vulgaris HOM05D004845 ORTHO05D005957 5.4e-147 526.6 1251 38.1
Sopen03g040190 Solanum pennellii HOM05D004845 ORTHO05D005957 9.2e-147 525.8 1314 40.0
Lalb_Chr04g0263091 Lupinus albus HOM05D004845 ORTHO05D005957 7.8e-146 522.7 1253 39.0
Sc12g0009860 Simmondsia chinensis HOM05D004845 ORTHO05D005957 1.0e-145 522.3 1254 40.5
THA.LOC104817934 Tarenaya hassleriana HOM05D004845 ORTHO05D005957 6.6e-145 519.6 1227 37.3
VMungo0331G0639 Vigna mungo HOM05D004845 ORTHO05D005957 6.6e-145 519.6 1251 38.2
Solyc03g121380.3 Solanum lycopersicum HOM05D004845 ORTHO05D005957 2.5e-144 517.7 1321 40.4
COL.COLO4_30609 Corchorus olitorius HOM05D004845 ORTHO05D005957 5.6e-144 516.5 1241 35.3
Manes.11G028800 Manihot esculenta HOM05D004845 ORTHO05D005957 1.8e-142 511.5 1313 39.4
Cpa.g.sc131.35 Carica papaya HOM05D004845 ORTHO05D005957 2.6e-141 507.7 1192 41.4
Oeu052809.1 Olea europaea HOM05D004845 ORTHO05D005957 5.4e-139 500.0 1135 40.0
ATR0730G184 Amborella trichopoda HOM05D004845 ORTHO05D005957 7.0e-139 499.6 1242 38.9
Actinidia32134 Actinidia chinensis HOM05D004845 ORTHO05D005957 8.6e-137 492.7 1093 41.1
CDE10G0270 Ceratophyllum demersum HOM05D004845 ORTHO05D005957 1.9e-136 491.5 1188 38.7
Lj3g0020048 Lotus japonicus HOM05D004845 ORTHO05D005957 4.3e-136 490.3 1210 37.9
CAN.G1668.10 Capsicum annuum HOM05D004845 ORTHO05D005957 1.2e-135 488.8 1214 39.3
EL10Ac9g21102 Beta vulgaris HOM05D004845 ORTHO05D005957 1.6e-135 488.4 1216 40.1
PGR102G0505 Punica granatum HOM05D004845 ORTHO05D005957 4.7e-135 486.9 1253 38.5
THA.LOC104810560 Tarenaya hassleriana HOM05D004845 ORTHO05D005957 6.4e-132 476.5 1260 35.6
Lsat_1_v5_gn_4_95940 Lactuca sativa HOM05D004845 ORTHO05D005957 1.6e-130 471.9 1263 37.7
HanXRQChr09g0276331 Helianthus annuus HOM05D004845 ORTHO05D005957 4.6e-130 470.3 1276 37.1
ECA232G1750 Erigeron canadensis HOM05D004845 ORTHO05D005957 5.8e-125 453.4 1290 36.4
AUR62023919 Chenopodium quinoa HOM05D004845 ORTHO05D005957 2.3e-121 441.4 1241 33.7
DCAR_007608 Daucus carota HOM05D004845 ORTHO05D005957 3.4e-117 427.6 1238 36.8
AUR62038325 Chenopodium quinoa HOM05D004845 ORTHO05D005957 5.8e-117 426.8 1235 34.2
Oeu026736.3 Olea europaea HOM05D004845 ORTHO05D005957 8.4e-116 422.9 1222 34.6
AL3G35330 Arabidopsis lyrata HOM05D004845 ORTHO05D005957 1.2e-109 402.5 1222 35.4
SGA_v2.0_scaffold71G23747 Striga asiatica HOM05D004845 ORTHO05D005957 1.2e-109 402.5 1225 36.2
Thhalv10019924m.g Eutrema salsugineum HOM05D004845 ORTHO05D005957 3.4e-109 401.0 1244 34.5
Carub.0003s2130 Capsella rubella HOM05D004845 ORTHO05D005957 9.9e-109 399.4 1252 35.5
Zm00001eb006560 Zea mays HOM05D004845 ORTHO05D005957 1.7e-108 398.7 1218 34.9
Sp3g19330 Schrenkiella parvula HOM05D004845 ORTHO05D005957 1.8e-105 388.7 1217 34.7
Ah.01g016900 Amaranthus hybridus HOM05D004845 ORTHO05D005957 6.7e-105 386.7 1192 37.2
MBI01_g37799_MAGBIO Magnolia biondii HOM05D004845 ORTHO05D005957 1.1e-104 386.0 755 38.0
AT3G21290 Arabidopsis thaliana HOM05D004845 ORTHO05D005957 3.3e-104 384.4 1218 35.6
Nitab4.5_0004848g0010 Nicotiana tabacum HOM05D004845 ORTHO05D005957 9.0e-102 376.3 419 56.3
Zm00001eb401540 Zea mays HOM05D004845 ORTHO05D005957 2.0e-101 375.2 1241 34.2
Psat4g193760 Pisum sativum HOM05D004845 ORTHO05D005957 1.3e-100 372.5 1068 35.9
Eucgr.J02886 Eucalyptus grandis HOM05D004845 ORTHO05D005957 2.2e-100 371.7 1053 37.3
HanXRQChr05g0140141 Helianthus annuus HOM05D004845 ORTHO05D005957 1.9e-99 368.6 1264 33.2
CSS0001379 Camellia sinensis var. sinensis HOM05D004845 ORTHO05D005957 8.7e-97 359.8 852 41.7
SEGI_05846 Sequoiadendron giganteum HOM05D004845 ORTHO05D005957 4.5e-93 347.4 1294 31.9
BraA05t21625Z Brassica rapa HOM05D004845 ORTHO05D005957 1.4e-91 342.4 1198 32.7
A05p27330 Brassica napus HOM05D004845 ORTHO05D005957 4.2e-91 340.9 1200 32.7
BcaC05g28184 Brassica carinata HOM05D004845 ORTHO05D005957 9.3e-91 339.7 1196 33.1
C05p42240 Brassica napus HOM05D004845 ORTHO05D005957 9.3e-91 339.7 1196 33.1
BolC5t32952H Brassica oleracea HOM05D004845 ORTHO05D005957 9.3e-91 339.7 1196 33.1
Aa31LG8G7990 Aethionema arabicum HOM05D004845 ORTHO05D005957 3.9e-89 334.3 1223 35.3
BcaB06g26218 Brassica carinata HOM05D004845 ORTHO05D005957 3.9e-89 334.3 1207 32.9
Lj5C49T6 Lonicera japonica HOM05D004845 ORTHO05D005957 1.1e-88 332.8 1048 33.0
SEGI_07021 Sequoiadendron giganteum HOM05D004845 ORTHO05D005957 9.3e-83 313.2 1262 31.5
SGA_v2.0_scaffold45G16992 Striga asiatica HOM05D004845 ORTHO05D005957 3.6e-82 311.2 429 47.3
CDE10G0876 Ceratophyllum demersum HOM05D004845 ORTHO05D005957 2.3e-81 308.5 398 50.5
TPR.G8763 Trifolium pratense HOM05D004845 ORTHO05D005957 4.3e-80 304.3 1196 32.5
Haze_15920 Corylus avellana HOM05D004845 ORTHO05D005957 2.2e-76 292.0 621 38.0
unitig_749.g14048 Utricularia gibba HOM05D004845 ORTHO05D005957 3.6e-74 284.6 988 33.4
Actinidia21743 Actinidia chinensis HOM05D004845 ORTHO05D005957 9.1e-70 270.0 336 54.8
CDE10G0326 Ceratophyllum demersum HOM05D004845 ORTHO05D005957 1.6e-66 259.2 715 30.8
Actinidia21742 Actinidia chinensis HOM05D004845 ORTHO05D005957 2.4e-62 245.4 931 29.3
Lalb_Chr15g0087461 Lupinus albus HOM05D004845 ORTHO05D005957 5.5e-59 234.2 1171 27.7
CARHR097190 Cardamine hirsuta HOM05D004845 ORTHO05D005957 4.8e-55 221.1 1082 30.9
Duzib192G0218 Durio zibethinus HOM05D004845 ORTHO05D005957 2.2e-52 212.2 274 49.6
HPP92_028291 Vanilla planifolia HOM05D004845 ORTHO05D005957 7.2e-51 207.2 189 60.3
BcaC09g49066 Brassica carinata HOM05D004845 ORTHO05D005957 2.1e-50 205.7 1208 28.1
Medtr8g015610 Medicago truncatula HOM05D004845 ORTHO05D005957 1.0e-49 203.4 1043 26.9
Atru.chr1.3631 Acer truncatum HOM05D001194 ORTHO05D005909 2.8e-47 195.3 324 42.3
Lalb_Chr14g0372871 Lupinus albus HOM05D004845 ORTHO05D005957 4.2e-43 181.4 129 69.8
Mapoly0021s0057 Marchantia polymorpha HOM05D004845 ORTHO05D005957 5.5e-43 181.0 462 32.7
Os03g0187100 Oryza sativa ssp. japonica HOM05D004845 ORTHO05D005957 5.2e-41 174.5 340 36.5
Pp3c12_1570 Physcomitrium patens HOM05D004845 ORTHO05D005957 2.7e-37 162.2 414 33.3
Lalb_Chr14g0372881 Lupinus albus HOM05D004845 ORTHO05D005957 4.3e-35 154.8 1083 29.6
SMO334G0114 Selaginella moellendorffii HOM05D004845 ORTHO05D005957 3.6e-34 151.8 425 30.6
AagrBONN_evm.TU.Sc2ySwM_344.5033 Anthoceros agrestis HOM05D004845 ORTHO05D005957 1.4e-30 139.8 1337 26.3
C01p42960 Brassica napus HOM05D004845 ORTHO05D005957 4.1e-30 138.3 127 59.1
BolC1t04240H Brassica oleracea HOM05D004845 ORTHO05D005957 9.2e-30 137.1 129 58.1
HPP92_028293 Vanilla planifolia HOM05D004845 ORTHO05D005957 1.2e-29 136.7 161 48.4
Haze_15921 Corylus avellana HOM05D004845 ORTHO05D005957 3.0e-28 132.1 214 44.9
unitig_749.g14049 Utricularia gibba HOM05D004845 ORTHO05D005957 2.8e-26 125.6 105 54.3
Ca_23298_v3 Cicer arietinum L. HOM05D004845 ORTHO05D005957 1.3e-23 116.7 178 42.1
C01p42950 Brassica napus HOM05D004845 ORTHO05D005957 1.7e-20 106.3 107 50.5
HPP92_028292 Vanilla planifolia HOM05D004845 ORTHO05D005957 3.9e-20 105.1 683 33.7
SHI11164 Sapria himalayana HOM05D004845 ORTHO05D003034 1.1e-19 103.6 80 62.5
CBR_g20996 Chara braunii HOM05D004845 ORTHO05D005957 1.9e-19 102.8 138 44.9
Ca_23296_v3 Cicer arietinum L. HOM05D004845 ORTHO05D005957 2.2e-15 89.4 152 38.2
Actinidia32135 Actinidia chinensis HOM05D004845 ORTHO05D005957 8.3e-15 87.4 140 49.3
CBR_g20995 Chara braunii HOM05D004845 ORTHO05D005957 3.2e-14 85.5 116 44.0
Zm00001eb424050 Zea mays HOM05D002942 ORTHO05D003270 1.7e-12 79.7 72 52.8
Cpa.g.sc131.32 Carica papaya HOM05D004845 ORTHO05D005957 1.9e-11 76.3 91 53.8
Medtr1g021875 Medicago truncatula HOM05D004845 ORTHO05D005957 4.7e-10 71.6 70 55.7
PGSC0003DMG400002508 Solanum tuberosum HOM05D004845 ORTHO05D005957 1.4e-09 70.1 136 43.4
SHI11167 Sapria himalayana HOM05D004845 ORTHO05D005957 8.9e-09 67.4 215 30.7
SHI11163 Sapria himalayana HOM05D004845 ORTHO05D005957 4.4e-08 65.1 53 66.0
BolC1t04238H Brassica oleracea HOM05D004845 ORTHO05D005957 5.8e-08 64.7 55 56.4


User provided reference genes

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