Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy7G00049 Aquilegia oxysepala HOM05D003086 ORTHO05D003347 1.7e-38 162.2 79 100.0
TAR375G0287 Trochodendron aralioides HOM05D003086 ORTHO05D003347 2.9e-22 108.2 79 68.4
TAR629G1883 Trochodendron aralioides HOM05D003086 ORTHO05D003347 9.3e-21 103.2 79 64.6
HPP92_025720 Vanilla planifolia HOM05D003086 ORTHO05D003347 1.3e-19 99.4 78 65.4
Nn3g18930 Nelumbo nucifera HOM05D003086 ORTHO05D003347 3.9e-19 97.8 81 63.0
TAR636G1396 Trochodendron aralioides HOM05D003086 ORTHO05D003347 5.1e-19 97.4 79 62.0
Atru.chr5.701 Acer truncatum HOM05D003086 ORTHO05D003347 1.6e-17 92.4 70 65.7
DCAR_008957 Daucus carota HOM05D003086 ORTHO05D003347 8.1e-17 90.1 80 62.5
Thecc.01G339800 Theobroma cacao HOM05D003086 ORTHO05D003347 2.4e-16 88.6 57 71.9
Hma1.2p1_0591F.1_g185160 Hydrangea macrophylla HOM05D003086 ORTHO05D003347 5.3e-16 87.4 82 59.8
Potri.002G173700 Populus trichocarpa HOM05D003086 ORTHO05D003347 1.5e-15 85.9 69 60.9
Gohir.D11G103100 Gossypium hirsutum HOM05D003086 ORTHO05D003347 2.0e-15 85.5 69 59.4
Gorai.007G110300 Gossypium raimondii HOM05D003086 ORTHO05D003347 2.0e-15 85.5 69 59.4
Cpa.g.sc96.51 Carica papaya HOM05D003086 ORTHO05D003347 5.8e-15 84.0 69 59.4
Gohir.A11G098500 Gossypium hirsutum HOM05D003086 ORTHO05D003347 5.8e-15 84.0 69 58.0
Manes.05G021200 Manihot esculenta HOM05D003086 ORTHO05D003347 1.3e-14 82.8 73 58.9
Sabra02G0139700 Salix brachista HOM05D003086 ORTHO05D003347 1.3e-14 82.8 69 60.9
Sabra14G0073900 Salix brachista HOM05D003086 ORTHO05D003347 1.3e-14 82.8 50 70.0
CDE02G0840 Ceratophyllum demersum HOM05D003086 ORTHO05D003347 2.9e-14 81.6 60 65.0
COL.COLO4_06232 Corchorus olitorius HOM05D003086 ORTHO05D003347 2.9e-14 81.6 50 70.0
Gohir.A08G124800 Gossypium hirsutum HOM05D003086 ORTHO05D003347 4.9e-14 80.9 50 70.0
MBI17_g21048_MAGBIO Magnolia biondii HOM05D003086 ORTHO05D003347 4.9e-14 80.9 68 64.7
Oeu027320.1 Olea europaea HOM05D003086 ORTHO05D003347 1.4e-13 79.3 70 54.3
Ciclev10022804m.g Citrus clementina HOM05D003086 ORTHO05D003347 2.4e-13 78.6 57 61.4
Migut.B01892 Erythranthe guttata HOM05D003086 ORTHO05D003347 2.4e-13 78.6 64 60.9
Gorai.004G151100 Gossypium raimondii HOM05D003086 ORTHO05D003347 2.4e-13 78.6 50 70.0
Lsat_1_v5_gn_4_30961 Lactuca sativa HOM05D003086 ORTHO05D003347 5.4e-13 77.4 61 62.3
QL09p037005 Quercus lobata HOM05D003086 ORTHO05D003347 1.2e-12 76.3 65 60.0
SalBow4G0310 Salvia bowleyana HOM05D003086 ORTHO05D003347 1.6e-12 75.9 60 63.3
CSS0006972 Camellia sinensis var. sinensis HOM05D003086 ORTHO05D003347 2.1e-12 75.5 52 69.2
HanXRQChr04g0120471 Helianthus annuus HOM05D003086 ORTHO05D003347 2.1e-12 75.5 72 55.6
Lsat_1_v5_gn_7_740 Lactuca sativa HOM05D003086 ORTHO05D003347 3.5e-12 74.7 70 57.1
Medtr8g027380 Medicago truncatula HOM05D003086 ORTHO05D003347 4.6e-12 74.3 53 58.5
Rhsim09G0207000 Rhododendron simsii HOM05D003086 ORTHO05D003347 4.6e-12 74.3 81 53.1
SHI13099 Sapria himalayana HOM05D003086 ORTHO05D003347 4.6e-12 74.3 52 65.4
Aqoxy5G04301 Aquilegia oxysepala HOM05D003086 ORTHO05D003347 7.9e-12 73.6 43 79.1
CSS0010966 Camellia sinensis var. sinensis HOM05D003086 ORTHO05D003347 1.0e-11 73.2 67 56.7
Actinidia20253 Actinidia chinensis HOM05D003086 ORTHO05D003347 1.3e-11 72.8 67 58.2
Migut.F00191 Erythranthe guttata HOM05D003086 ORTHO05D003347 1.3e-11 72.8 60 61.7
TPR.G20234 Trifolium pratense HOM05D003086 ORTHO05D003347 2.3e-11 72.0 53 60.4
Psat4g162600 Pisum sativum HOM05D003086 ORTHO05D003347 3.0e-11 71.6 54 59.3
Ca_23518_v3 Cicer arietinum L. HOM05D003086 ORTHO05D003347 3.9e-11 71.2 53 64.2
Haze_15678 Corylus avellana HOM05D003086 ORTHO05D003347 3.9e-11 71.2 64 51.6
Oeu010701.1 Olea europaea HOM05D003086 ORTHO05D003347 3.9e-11 71.2 92 48.9
Rhsim07G0002900 Rhododendron simsii HOM05D003086 ORTHO05D003347 3.9e-11 71.2 70 57.1
SalBow3G3175 Salvia bowleyana HOM05D003086 ORTHO05D003347 3.9e-11 71.2 62 53.2
HanXRQChr16g0524361 Helianthus annuus HOM05D003086 ORTHO05D003347 8.7e-11 70.1 51 68.6
Hma1.2p1_0415F.1_g147960 Hydrangea macrophylla HOM05D003086 ORTHO05D003347 8.7e-11 70.1 81 49.4
Ah.13g070480 Amaranthus hybridus HOM05D003086 ORTHO05D003347 1.1e-10 69.7 65 50.8
EL10Ac3g05245 Beta vulgaris HOM05D003086 ORTHO05D003347 1.5e-10 69.3 61 50.8
Solyc06g052060.3 Solanum lycopersicum HOM05D003086 ORTHO05D003347 1.5e-10 69.3 70 55.7
COL.COLO4_16806 Corchorus olitorius HOM05D003086 ORTHO05D003347 1.9e-10 68.9 44 72.7
HanXRQChr08g0225161 Helianthus annuus HOM05D003086 ORTHO05D003347 2.5e-10 68.6 83 45.8
Sopen06g018110 Solanum pennellii HOM05D003086 ORTHO05D003347 3.3e-10 68.2 70 52.9
PGSC0003DMG400019607 Solanum tuberosum HOM05D003086 ORTHO05D003347 3.3e-10 68.2 70 52.9
ClCG01G000300 Citrullus lanatus HOM05D003086 ORTHO05D003347 5.6e-10 67.4 58 62.1
MELO3C005905.2 Cucumis melo HOM05D003086 ORTHO05D003347 5.6e-10 67.4 58 62.1
CsaV3_5G000270 Cucumis sativus L. HOM05D003086 ORTHO05D003347 5.6e-10 67.4 58 62.1
MD07G1294800 Malus domestica HOM05D003086 ORTHO05D003347 5.6e-10 67.4 56 62.5
Haze_09122 Corylus avellana HOM05D003086 ORTHO05D003347 7.4e-10 67.0 79 48.1
Cfa003782 Carpinus fangiana HOM05D003086 ORTHO05D003347 9.6e-10 66.6 64 51.6
Gohir.D12G249000 Gossypium hirsutum HOM05D003086 ORTHO05D003347 9.6e-10 66.6 75 50.7
Gorai.008G267200 Gossypium raimondii HOM05D003086 ORTHO05D003347 9.6e-10 66.6 75 50.7
Prupe.2G314400 Prunus persica HOM05D003086 ORTHO05D003347 9.6e-10 66.6 56 60.7
SEGI_15730 Sequoiadendron giganteum HOM05D003086 ORTHO05D003347 9.6e-10 66.6 52 65.4
Thecc.03G202500 Theobroma cacao HOM05D003086 ORTHO05D003347 9.6e-10 66.6 44 70.5
Actinidia07974 Actinidia chinensis HOM05D003086 ORTHO05D003347 1.3e-09 66.2 49 65.3
MD01G1224000 Malus domestica HOM05D003086 ORTHO05D003347 1.6e-09 65.9 56 60.7
Nitab4.5_0000015g0220 Nicotiana tabacum HOM05D003086 ORTHO05D003347 1.6e-09 65.9 66 51.5
HPP92_013003 Vanilla planifolia HOM05D003086 ORTHO05D003347 1.6e-09 65.9 73 46.6
SalBow5G4530 Salvia bowleyana HOM05D003086 ORTHO05D003347 2.1e-09 65.5 43 72.1
CAN.G1415.17 Capsicum annuum HOM05D003086 ORTHO05D003347 2.8e-09 65.1 57 57.9
Gohir.A12G248300 Gossypium hirsutum HOM05D003086 ORTHO05D003347 2.8e-09 65.1 44 70.5
Actinidia18664 Actinidia chinensis HOM05D003086 ORTHO05D003347 3.7e-09 64.7 67 52.2
CANSAT21G0721 Cannabis sativa HOM05D003086 ORTHO05D003347 4.8e-09 64.3 85 47.1
CAN.G481.40 Capsicum annuum HOM05D003086 ORTHO05D003347 4.8e-09 64.3 77 46.8
MD06G1113400 Malus domestica HOM05D003086 ORTHO05D003347 4.8e-09 64.3 86 48.8
Sed0023695 Sechium edule HOM05D003086 ORTHO05D003347 4.8e-09 64.3 58 58.6
Cfa015968 Carpinus fangiana HOM05D003086 ORTHO05D003347 6.2e-09 63.9 49 57.1
AUR62006063 Chenopodium quinoa HOM05D003086 ORTHO05D003347 6.2e-09 63.9 50 56.0
AUR62035564 Chenopodium quinoa HOM05D003086 ORTHO05D003347 6.2e-09 63.9 50 56.0
COL.COLO4_10758 Corchorus olitorius HOM05D003086 ORTHO05D003347 6.2e-09 63.9 59 54.2
ECA233G0233 Erigeron canadensis HOM05D003086 ORTHO05D003347 6.2e-09 63.9 79 41.8
Os10g0502100 Oryza sativa ssp. japonica HOM05D003086 ORTHO05D003347 6.2e-09 63.9 59 55.9
Peaxi162Scf00618g00332 Petunia axillaris HOM05D003086 ORTHO05D003347 6.2e-09 63.9 70 50.0
CAN.G874.33 Capsicum annuum HOM05D003086 ORTHO05D003347 8.1e-09 63.5 51 58.8
Glyma.07G054300 Glycine max HOM05D003086 ORTHO05D003347 8.1e-09 63.5 46 60.9
Cc02_g01250 Coffea canephora HOM05D003086 ORTHO05D003347 1.1e-08 63.2 60 55.0
PGR142G1468 Punica granatum HOM05D003086 ORTHO05D003347 1.1e-08 63.2 59 55.9
CiPaw.05G227500 Carya illinoinensis HOM05D003086 ORTHO05D003347 1.4e-08 62.8 49 63.3
Prupe.5G126200 Prunus persica HOM05D003086 ORTHO05D003347 1.4e-08 62.8 79 44.3
HPP92_014802 Vanilla planifolia HOM05D003086 ORTHO05D003347 1.8e-08 62.4 56 53.6
FAN18G2695 Fragaria x ananassa HOM05D003086 ORTHO05D003347 2.4e-08 62.0 77 41.6
QL08p045815 Quercus lobata HOM05D003086 ORTHO05D003347 2.4e-08 62.0 47 59.6
FAN13G3255 Fragaria x ananassa HOM05D003086 ORTHO05D003347 3.1e-08 61.6 77 41.6
PGR042G2701 Punica granatum HOM05D003086 ORTHO05D003347 3.1e-08 61.6 49 59.2
ATR0797G001 Amborella trichopoda HOM05D007433 ORTHO05D003347 4.0e-08 61.2 42 64.3
Manes.01G039600 Manihot esculenta HOM05D003086 ORTHO05D003347 4.0e-08 61.2 47 61.7
RcHm_v2.0_Chr7g0186341 Rosa chinensis HOM05D003086 ORTHO05D003347 4.0e-08 61.2 80 42.5
Migut.N01532 Erythranthe guttata HOM05D003086 ORTHO05D003347 9.0e-08 60.1 56 58.9
Gohir.D11G015350 Gossypium hirsutum HOM05D003086 ORTHO05D003347 9.0e-08 60.1 42 61.9
Gorai.007G015800 Gossypium raimondii HOM05D003086 ORTHO05D003347 9.0e-08 60.1 42 61.9
Peaxi162Scf00740g00215 Petunia axillaris HOM05D003086 ORTHO05D003347 9.0e-08 60.1 53 54.7
Potri.001G087200 Populus trichocarpa HOM05D003086 ORTHO05D003347 1.2e-07 59.7 80 42.5
Nitab4.5_0007100g0040 Nicotiana tabacum HOM05D003086 ORTHO05D003347 1.5e-07 59.3 74 47.3
Atru.chr9.1962 Acer truncatum HOM05D003086 ORTHO05D003347 2.0e-07 58.9 62 46.8
Cpa.g.sc1802.1 Carica papaya HOM05D003086 ORTHO05D003347 2.0e-07 58.9 63 46.0
Gohir.A09G186001 Gossypium hirsutum HOM05D003086 ORTHO05D003347 2.6e-07 58.5 42 64.3
Gohir.D09G180500 Gossypium hirsutum HOM05D003086 ORTHO05D003347 2.6e-07 58.5 42 64.3
Gorai.006G202500 Gossypium raimondii HOM05D003086 ORTHO05D003347 2.6e-07 58.5 42 64.3
FvH4_5g11470 Fragaria vesca HOM05D003086 ORTHO05D003347 3.4e-07 58.2 77 41.6
Sc23g0002030 Simmondsia chinensis HOM05D003086 ORTHO05D003347 3.4e-07 58.2 39 61.5
Sopen03g022700 Solanum pennellii HOM05D003086 ORTHO05D003347 3.4e-07 58.2 76 44.7
PGSC0003DMG400018543 Solanum tuberosum HOM05D003086 ORTHO05D003347 3.4e-07 58.2 76 44.7
Thecc.03G304300 Theobroma cacao HOM05D003086 ORTHO05D003347 3.4e-07 58.2 54 48.1
Carub.0006s2958 Capsella rubella HOM05D003086 ORTHO05D003347 4.5e-07 57.8 57 49.1
Gohir.A11G015250 Gossypium hirsutum HOM05D003086 ORTHO05D003347 4.5e-07 57.8 40 62.5
RcHm_v2.0_Chr1g0381731 Rosa chinensis HOM05D003086 ORTHO05D003347 4.5e-07 57.8 45 66.7
unitig_85.g27205 Utricularia gibba HOM05D003086 ORTHO05D003347 4.5e-07 57.8 52 51.9
FAN03G2739 Fragaria x ananassa HOM05D002608 ORTHO05D013420 5.8e-07 57.4 82 46.3
FAN10G1862 Fragaria x ananassa HOM05D037066 ORTHO05D003347 5.8e-07 57.4 82 47.6
Thecc.03G304600 Theobroma cacao HOM05D003086 ORTHO05D003347 7.6e-07 57.0 54 46.3
AT4G10810 Arabidopsis thaliana HOM05D003086 ORTHO05D003347 9.9e-07 56.6 57 47.4
FAN08G3604 Fragaria x ananassa HOM05D003086 ORTHO05D003347 9.9e-07 56.6 77 41.6
Manes.02G005600 Manihot esculenta HOM05D003086 ORTHO05D003347 1.3e-06 56.2 79 41.8
Nitab4.5_0002780g0040 Nicotiana tabacum HOM05D003086 ORTHO05D003347 1.3e-06 56.2 57 49.1
Zm00001eb259280 Zea mays HOM05D003086 ORTHO05D003347 1.7e-06 55.8 52 55.8
Aa31LG2G1580 Aethionema arabicum HOM05D000001 ORTHO05D000003 2.2e-06 55.5 58 50.0
AL6G44860 Arabidopsis lyrata HOM05D003086 ORTHO05D003347 2.2e-06 55.5 63 42.9
Ciclev10023176m.g Citrus clementina HOM05D003086 ORTHO05D003347 2.2e-06 55.5 46 56.5
Ciclev10033638m.g Citrus clementina HOM05D003086 ORTHO05D003347 2.2e-06 55.5 46 56.5
THA.LOC104813050 Tarenaya hassleriana HOM05D003086 ORTHO05D003347 2.2e-06 55.5 56 50.0
Thhalv10026968m.g Eutrema salsugineum HOM05D003086 ORTHO05D003347 2.9e-06 55.1 59 44.1
MBI16_g32085_MAGBIO Magnolia biondii HOM05D007433 ORTHO05D009199 2.9e-06 55.1 42 59.5
CARHR255790 Cardamine hirsuta HOM05D003086 ORTHO05D003347 3.8e-06 54.7 63 41.3
CiPaw.12G080100 Carya illinoinensis HOM05D003086 ORTHO05D003347 3.8e-06 54.7 67 43.3
DCAR_010587 Daucus carota HOM05D000020 ORTHO05D001617 3.8e-06 54.7 48 54.2
Ah.07g205310 Amaranthus hybridus HOM05D003086 ORTHO05D003347 4.9e-06 54.3 39 61.5
CARHR046350 Cardamine hirsuta HOM05D003086 ORTHO05D003347 4.9e-06 54.3 57 49.1
Sabra01G0063400 Salix brachista HOM05D003086 ORTHO05D003347 4.9e-06 54.3 79 39.2
Zm00001eb029410 Zea mays HOM05D003086 ORTHO05D003347 4.9e-06 54.3 62 45.2
AUR62004513 Chenopodium quinoa HOM05D003086 ORTHO05D003347 6.4e-06 53.9 30 73.3
FAN01G2353 Fragaria x ananassa HOM05D037066 ORTHO05D003347 6.4e-06 53.9 80 47.5
Gorai.004G131100 Gossypium raimondii HOM05D003086 ORTHO05D003347 6.4e-06 53.9 56 44.6
THA.LOC109116607 Tarenaya hassleriana HOM05D003086 ORTHO05D003347 6.4e-06 53.9 63 41.3
FAN04G2505 Fragaria x ananassa HOM05D003086 ORTHO05D003347 8.4e-06 53.5 77 40.3
Lj3g0004362 Lotus japonicus HOM05D003086 ORTHO05D003347 8.4e-06 53.5 29 75.9


User provided reference genes

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