Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy6G02901 Aquilegia oxysepala HOM05D004598 ORTHO05D005550 1.7e-252 875.5 438 100.0
Aqoxy3G01530 Aquilegia oxysepala HOM05D004598 ORTHO05D005550 3.6e-247 857.8 438 97.7
Aqoxy3G01523 Aquilegia oxysepala HOM05D004598 ORTHO05D005550 2.6e-245 851.7 430 98.4
Aqoxy3G00619 Aquilegia oxysepala HOM05D004598 ORTHO05D005550 1.9e-224 782.3 438 91.3
TAR624G0541 Trochodendron aralioides HOM05D004598 ORTHO05D005550 1.9e-187 659.4 435 74.3
CSS0038935 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 3.3e-184 648.7 432 72.9
CSS0039662 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 3.3e-184 648.7 432 72.9
MBI19_g29897_MAGBIO Magnolia biondii HOM05D004598 ORTHO05D005550 9.9e-181 637.1 442 69.7
PSO675G4488 Papaver somniferum HOM05D004598 ORTHO05D005550 2.2e-180 636.0 477 66.7
Atru.chr3.3248 Acer truncatum HOM05D004598 ORTHO05D005550 2.4e-179 632.5 434 71.0
CSS0010665 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 4.2e-179 631.7 432 71.3
MBI02_g31690_MAGBIO Magnolia biondii HOM05D004598 ORTHO05D005550 1.3e-177 626.7 442 68.8
Actinidia02429 Actinidia chinensis HOM05D004598 ORTHO05D005550 3.9e-177 625.2 419 71.4
HanXRQChr03g0066861 Helianthus annuus HOM05D004598 ORTHO05D005550 3.9e-177 625.2 419 71.6
FvH4_2g15820 Fragaria vesca HOM05D004598 ORTHO05D005550 5.1e-177 624.8 435 69.9
Manes.14G169500 Manihot esculenta HOM05D004598 ORTHO05D005550 5.1e-177 624.8 430 71.6
Potri.001G031500 Populus trichocarpa HOM05D004598 ORTHO05D005550 5.1e-177 624.8 416 71.9
FAN15G2177 Fragaria x ananassa HOM05D004598 ORTHO05D005550 6.6e-177 624.4 435 69.7
CiPaw.13G015900 Carya illinoinensis HOM05D004598 ORTHO05D005550 1.9e-176 622.9 435 69.2
FAN27G3211 Fragaria x ananassa HOM05D004598 ORTHO05D005550 3.3e-176 622.1 435 69.7
Prupe.8G170900 Prunus persica HOM05D004598 ORTHO05D005550 4.7e-175 618.2 434 69.1
RcHm_v2.0_Chr6g0279191 Rosa chinensis HOM05D004598 ORTHO05D005550 4.7e-175 618.2 434 69.1
vmacro20477 Vaccinium macrocarpon HOM05D004598 ORTHO05D005550 8.1e-175 617.5 432 69.2
Sopen02g028050 Solanum pennellii HOM05D004598 ORTHO05D005550 1.1e-174 617.1 431 70.5
TWI18G0003 Tripterygium wilfordii HOM05D004598 ORTHO05D005550 2.4e-174 615.9 432 68.5
Sabra01G0022600 Salix brachista HOM05D004598 ORTHO05D005550 5.3e-174 614.8 418 70.3
Hma1.2p1_0315F.1_g122700 Hydrangea macrophylla HOM05D004598 ORTHO05D005550 1.2e-173 613.6 418 70.8
Solyc02g083260.3 Solanum lycopersicum HOM05D004598 ORTHO05D005550 1.5e-173 613.2 435 69.9
Ca_23979_v3 Cicer arietinum L. HOM05D004598 ORTHO05D005550 2.0e-173 612.8 435 69.4
PGSC0003DMG400001580 Solanum tuberosum HOM05D004598 ORTHO05D005550 3.4e-173 612.1 435 69.9
Lj3g0020284 Lotus japonicus HOM05D004598 ORTHO05D005550 5.8e-173 611.3 435 68.3
VMungo1080G1126 Vigna mungo HOM05D004598 ORTHO05D005550 7.6e-173 610.9 435 68.3
AUR62026210 Chenopodium quinoa HOM05D004598 ORTHO05D005550 9.9e-173 610.5 437 69.1
MD05G1127200 Malus domestica HOM05D004598 ORTHO05D005550 1.3e-172 610.1 436 68.8
Ah.03g134220 Amaranthus hybridus HOM05D004598 ORTHO05D005550 2.9e-172 609.0 427 68.9
Thecc.04G114500 Theobroma cacao HOM05D004598 ORTHO05D005550 3.8e-172 608.6 419 71.6
Eucgr.H00040 Eucalyptus grandis HOM05D004598 ORTHO05D005550 4.9e-172 608.2 435 67.4
Peaxi162Scf00300g00120 Petunia axillaris HOM05D004598 ORTHO05D005550 8.4e-172 607.4 432 69.7
TPR.G8530 Trifolium pratense HOM05D004598 ORTHO05D005550 1.4e-171 606.7 435 68.0
Phvul.005G043300 Phaseolus vulgaris HOM05D004598 ORTHO05D005550 2.4e-171 605.9 434 67.5
Sc16g0001780 Simmondsia chinensis HOM05D004598 ORTHO05D005550 3.2e-171 605.5 418 69.4
CsaV3_7G001350 Cucumis sativus L. HOM05D004598 ORTHO05D005550 4.2e-171 605.1 431 68.0
CAN.G890.18 Capsicum annuum HOM05D004598 ORTHO05D005550 5.4e-171 604.7 433 69.3
MELO3C013319.2 Cucumis melo HOM05D004598 ORTHO05D005550 1.6e-170 603.2 446 66.8
Lalb_Chr01g0007411 Lupinus albus HOM05D004598 ORTHO05D005550 1.3e-169 600.1 435 67.4
CARHR191400 Cardamine hirsuta HOM05D004598 ORTHO05D005550 2.3e-169 599.4 435 67.1
Medtr8g040610 Medicago truncatula HOM05D004598 ORTHO05D005550 2.3e-169 599.4 435 67.4
Hund05921 Selenicereus undatus HOM05D004598 ORTHO05D005550 3.9e-169 598.6 422 68.2
COL.COLO4_05992 Corchorus olitorius HOM05D004598 ORTHO05D005550 5.1e-169 598.2 418 70.1
Gorai.001G088100 Gossypium raimondii HOM05D004598 ORTHO05D005550 1.1e-168 597.0 429 68.5
Carub.0006s1977 Capsella rubella HOM05D004598 ORTHO05D005550 1.5e-168 596.7 434 67.3
SalBow6G7131 Salvia bowleyana HOM05D004598 ORTHO05D005550 1.5e-168 596.7 430 67.0
PGR004G0790 Punica granatum HOM05D004598 ORTHO05D005550 2.5e-168 595.9 416 68.3
THA.LOC104799567 Tarenaya hassleriana HOM05D004598 ORTHO05D005550 5.6e-168 594.7 434 68.0
Gohir.D07G082500 Gossypium hirsutum HOM05D004598 ORTHO05D005550 7.3e-168 594.3 429 68.3
MSTRG.2598 Avicennia marina HOM05D004598 ORTHO05D005550 9.6e-168 594.0 434 65.7
Gohir.A07G077700 Gossypium hirsutum HOM05D004598 ORTHO05D005550 1.3e-167 593.6 431 68.7
Cc07_g11450 Coffea canephora HOM05D004598 ORTHO05D005550 1.6e-167 593.2 419 69.7
Sp6g23050 Schrenkiella parvula HOM05D004598 ORTHO05D005550 1.6e-167 593.2 435 66.9
Thhalv10013575m.g Eutrema salsugineum HOM05D004598 ORTHO05D005550 2.1e-167 592.8 418 68.2
ATR0165G018 Amborella trichopoda HOM05D004598 ORTHO05D005550 6.2e-167 591.3 429 65.5
SalBow2G2153 Salvia bowleyana HOM05D004598 ORTHO05D005550 8.1e-167 590.9 430 66.5
BcaC03g13863 Brassica carinata HOM05D004598 ORTHO05D005550 1.1e-166 590.5 435 66.2
Duzib133G0026 Durio zibethinus HOM05D004598 ORTHO05D005550 1.8e-166 589.7 468 64.5
BcaB05g22747 Brassica carinata HOM05D004598 ORTHO05D005550 6.9e-166 587.8 434 66.8
AT5G22130 Arabidopsis thaliana HOM05D004598 ORTHO05D005550 1.5e-165 586.6 445 64.9
ClCG02G003800 Citrullus lanatus HOM05D004598 ORTHO05D005550 2.0e-165 586.3 435 66.7
BraA02t05641Z Brassica rapa HOM05D004598 ORTHO05D005550 2.6e-165 585.9 434 65.9
AL6G33110 Arabidopsis lyrata HOM05D004598 ORTHO05D005550 3.4e-165 585.5 435 66.0
C02p10690 Brassica napus HOM05D004598 ORTHO05D005550 4.5e-165 585.1 435 65.3
Nitab4.5_0004259g0040 Nicotiana tabacum HOM05D004598 ORTHO05D005550 5.8e-165 584.7 493 61.3
Glyma.08G159600 Glycine max HOM05D004598 ORTHO05D005550 9.9e-165 583.9 435 66.2
HanXRQChr14g0454151 Helianthus annuus HOM05D004598 ORTHO05D005550 2.2e-164 582.8 393 71.8
BolC2t07140H Brassica oleracea HOM05D004598 ORTHO05D005550 3.8e-164 582.0 434 65.7
GSVIVG01017167001 Vitis vinifera HOM05D004598 ORTHO05D005550 6.4e-164 581.3 410 70.2
Migut.H02299 Erythranthe guttata HOM05D004598 ORTHO05D005550 8.4e-164 580.9 428 66.1
Cpa.g.sc9.382 Carica papaya HOM05D004598 ORTHO05D005550 7.1e-163 577.8 466 63.5
Aa31LG1G13300 Aethionema arabicum HOM05D004598 ORTHO05D005550 4.6e-162 575.1 437 62.9
Rhsim11G0148800 Rhododendron simsii HOM05D004598 ORTHO05D005550 2.3e-161 572.8 432 65.5
Ciclev10001079m.g Citrus clementina HOM05D004598 ORTHO05D005550 3.7e-159 565.5 432 65.5
QL11p052661 Quercus lobata HOM05D004598 ORTHO05D005550 7.1e-155 551.2 450 61.8
AUR62026384 Chenopodium quinoa HOM05D004598 ORTHO05D005550 1.3e-153 547.0 379 70.2
Dinv08542 Davidia involucrata HOM05D004598 ORTHO05D005550 3.3e-152 542.3 406 67.2
HPP92_002259 Vanilla planifolia HOM05D004598 ORTHO05D005550 1.3e-151 540.4 389 66.6
Haze_02994 Corylus avellana HOM05D006110 ORTHO05D007774 4.5e-149 531.9 414 64.7
Medtr1g058230 Medicago truncatula HOM05D004598 ORTHO05D005550 3.5e-146 522.3 428 61.7
BcaC07g41302 Brassica carinata HOM05D004598 ORTHO05D005550 7.4e-144 514.6 415 62.4
BolC8t51865H Brassica oleracea HOM05D004598 ORTHO05D005550 1.3e-143 513.8 427 61.4
Oeu046543.3 Olea europaea HOM05D004598 ORTHO05D005550 2.4e-142 509.6 406 63.8
TPR.G6064 Trifolium pratense HOM05D004598 ORTHO05D005550 6.5e-140 501.5 435 59.1
Os03g0670200 Oryza sativa ssp. japonica HOM05D004598 ORTHO05D005550 3.7e-135 485.7 432 57.2
EL10Ac6g13343 Beta vulgaris HOM05D004598 ORTHO05D005550 4.8e-135 485.3 422 60.2
CDE02G1977 Ceratophyllum demersum HOM05D004598 ORTHO05D005550 1.5e-133 480.3 348 66.1
SEGI_01084 Sequoiadendron giganteum HOM05D004598 ORTHO05D005550 1.5e-133 480.3 369 62.9
Hma1.2p1_0315F.1_g122690 Hydrangea macrophylla HOM05D004598 ORTHO05D005550 2.9e-132 476.1 337 70.9
Nitab4.5_0001696g0090 Nicotiana tabacum HOM05D004598 ORTHO05D005550 5.0e-132 475.3 417 60.0
Cfa010950 Carpinus fangiana HOM05D006110 ORTHO05D007774 2.1e-130 469.9 332 71.7
Mapoly0079s0001 Marchantia polymorpha HOM05D004598 ORTHO05D005550 1.1e-128 464.2 408 54.2
Sed0007699 Sechium edule HOM05D004598 ORTHO05D005550 2.8e-127 459.5 339 67.6
arahy.Tifrunner.gnm1.ann1.B5R5MF Arachis hypogaea HOM05D004598 ORTHO05D005550 1.5e-125 453.8 333 67.0
AagrBONN_evm.TU.Sc2ySwM_368.2499 Anthoceros agrestis HOM05D004598 ORTHO05D005550 2.6e-125 453.0 426 53.8
arahy.Tifrunner.gnm1.ann1.K5F1ZR Arachis hypogaea HOM05D004598 ORTHO05D005550 4.5e-125 452.2 331 67.4
Lj2A487T63 Lonicera japonica HOM05D004598 ORTHO05D005550 1.9e-123 446.8 447 53.2
Pp3c1_29840 Physcomitrium patens HOM05D004598 ORTHO05D005550 2.0e-120 436.8 416 51.4
DCAR_027631 Daucus carota HOM05D004598 ORTHO05D005550 2.2e-119 433.3 304 70.4
arahy.Tifrunner.gnm1.ann1.PEW2A9 Arachis hypogaea HOM05D004598 ORTHO05D005550 2.8e-119 433.0 340 64.1
SGA_v2.0_scaffold195G40853 Striga asiatica HOM05D004598 ORTHO05D003143 3.7e-119 432.6 325 64.6
SMO118G0414 Selaginella moellendorffii HOM05D004598 ORTHO05D005550 3.1e-118 429.5 409 54.8
vmacro22733 Vaccinium macrocarpon HOM05D004598 ORTHO05D005550 5.9e-109 398.7 432 49.8
CBR_g41686 Chara braunii HOM05D004598 ORTHO05D005550 2.2e-103 380.2 572 39.3
Migut.H02295 Erythranthe guttata HOM05D004598 ORTHO05D005550 2.2e-103 380.2 340 58.2
C08p43090 Brassica napus HOM05D004598 ORTHO05D005550 2.8e-95 353.2 291 60.5
Migut.H02297 Erythranthe guttata HOM05D004598 ORTHO05D005550 3.2e-94 349.7 279 61.3
Gohir.A11G320400 Gossypium hirsutum HOM05D004598 ORTHO05D005550 7.8e-93 345.1 371 53.4
arahy.Tifrunner.gnm1.ann1.BN9D0T Arachis hypogaea HOM05D004598 ORTHO05D005550 3.3e-91 339.7 364 51.6
CSS0036727 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 4.0e-89 332.8 251 65.3
FAN20G2148 Fragaria x ananassa HOM05D004598 ORTHO05D005550 1.3e-87 327.8 435 42.5
Manes.07G140750 Manihot esculenta HOM05D004598 ORTHO05D005550 3.7e-87 326.2 281 62.6
unitig_736.g22586 Utricularia gibba HOM05D004598 ORTHO05D005550 7.8e-85 318.5 272 57.0
ECA240G3480 Erigeron canadensis HOM05D004598 ORTHO05D005550 1.5e-83 314.3 205 71.2
Lsat_1_v5_gn_9_118221 Lactuca sativa HOM05D004598 ORTHO05D005550 8.1e-82 308.5 426 42.3
Actinidia00342 Actinidia chinensis HOM05D004598 ORTHO05D005550 7.5e-80 302.0 341 49.3
Thhalv10015361m.g Eutrema salsugineum HOM05D004598 ORTHO05D005550 8.3e-79 298.5 234 63.2
SHI34561 Sapria himalayana HOM05D004598 ORTHO05D005550 4.1e-78 296.2 426 40.4
SGA_v2.0_scaffold108G30913 Striga asiatica HOM05D004598 ORTHO05D005550 3.6e-74 283.1 398 41.7
Cre14.g616200 Chlamydomonas reinhardtii HOM05D004598 ORTHO05D005550 4.1e-70 269.6 468 37.0
Zm00001eb096280 Zea mays HOM05D004598 ORTHO05D005550 1.6e-69 267.7 221 62.9
Nn2g12459 Nelumbo nucifera HOM05D004598 ORTHO05D005550 7.8e-69 265.4 150 82.7
CSS0012948 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 2.8e-66 256.9 148 81.1
Rhsim11G0028900 Rhododendron simsii HOM05D004598 ORTHO05D005550 4.2e-62 243.0 361 40.4
Psat6g012400 Pisum sativum HOM05D004598 ORTHO05D005550 1.2e-61 241.5 154 72.7
BNapus_Darmor_BZH_scaffold_38p00840 Brassica napus HOM05D004598 ORTHO05D005550 2.1e-58 230.7 145 73.8
FAN24G1674 Fragaria x ananassa HOM05D004598 ORTHO05D005550 8.1e-58 228.8 178 63.5
MCO01G023 Micromonas commoda HOM05D004598 ORTHO05D005550 5.3e-57 226.1 432 35.6
TAR160G0002 Trochodendron aralioides HOM05D004598 ORTHO05D005550 5.3e-57 226.1 181 66.3
MD10G1130700 Malus domestica HOM05D004598 ORTHO05D005550 2.4e-54 217.2 141 71.6
Cfa027243 Carpinus fangiana HOM05D004598 ORTHO05D005550 5.4e-54 216.1 408 35.3
vmacro01928 Vaccinium macrocarpon HOM05D004598 ORTHO05D005550 1.6e-53 214.5 145 70.3
MD10G1130600 Malus domestica HOM05D004598 ORTHO05D005550 1.9e-51 207.6 154 64.3
BolC9t58552H Brassica oleracea HOM05D004598 ORTHO05D005550 2.0e-48 197.6 258 47.3
Dinv26897 Davidia involucrata HOM05D004598 ORTHO05D005550 7.1e-46 189.1 112 80.4
Lj2E933T1 Lonicera japonica HOM05D004598 ORTHO05D005550 1.3e-44 184.9 111 75.7
BcaB01g04740 Brassica carinata HOM05D004598 ORTHO05D005550 1.4e-30 138.3 123 61.0
vmacro20475 Vaccinium macrocarpon HOM05D004598 ORTHO05D005550 1.5e-27 128.3 82 72.0
vmacro22736 Vaccinium macrocarpon HOM05D004598 ORTHO05D005550 1.5e-27 128.3 82 72.0
PRCOL_00005536 Prasinoderma coloniale HOM05D004598 ORTHO05D005550 3.7e-26 123.6 429 26.1
MELO3C010621.2 Cucumis melo HOM05D004598 ORTHO05D005550 1.2e-24 118.6 85 63.5
Rhsim09G0084000 Rhododendron simsii HOM05D004598 ORTHO05D005550 6.1e-21 106.3 62 80.6
SHI43372 Sapria himalayana HOM05D004598 ORTHO05D005550 1.0e-15 89.0 334 25.4
CAN.G890.17 Capsicum annuum HOM05D004598 ORTHO05D005550 8.8e-12 75.9 81 50.6
SHI44717 Sapria himalayana HOM05D004598 ORTHO05D005550 2.0e-11 74.7 124 39.5
Medtr6g051670 Medicago truncatula HOM05D004598 ORTHO05D005550 6.3e-10 69.7 43 67.4
SHI39035 Sapria himalayana HOM05D004598 ORTHO05D005550 8.2e-10 69.3 49 65.3
SHI47796 Sapria himalayana HOM05D004598 ORTHO05D005550 4.1e-09 67.0 49 61.2
SHI53813 Sapria himalayana HOM05D004598 ORTHO05D005550 1.7e-07 61.6 63 44.4
SHI39037 Sapria himalayana HOM05D004598 ORTHO05D005550 2.2e-07 61.2 63 44.4
SHI53927 Sapria himalayana HOM05D004598 ORTHO05D005550 2.2e-07 61.2 60 45.0


User provided reference genes

Program Settings