Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy6G02752 Aquilegia oxysepala HOM05D006153 ORTHO05D007701 6.3e-57 223.8 105 100.0
TAR381G0917 Trochodendron aralioides HOM05D006153 ORTHO05D007701 8.3e-17 90.5 99 51.5
PSO541G5112 Papaver somniferum HOM05D006153 ORTHO05D007701 2.4e-16 89.0 107 47.7
Thecc.02G113400 Theobroma cacao HOM05D006153 ORTHO05D007701 5.4e-16 87.8 105 48.6
PGR042G3678 Punica granatum HOM05D006153 ORTHO05D007701 1.5e-13 79.7 101 41.6
Manes.07G064400 Manihot esculenta HOM05D006153 ORTHO05D007701 1.9e-13 79.3 68 52.9
Dinv42217 Davidia involucrata HOM05D006153 ORTHO05D007701 2.5e-13 79.0 100 44.0
Sc14g0002580 Simmondsia chinensis HOM05D006153 ORTHO05D007701 3.2e-13 78.6 77 48.1
MBI16_g15146_MAGBIO Magnolia biondii HOM05D006153 ORTHO05D007701 4.2e-13 78.2 96 46.9
Hma1.2p1_1174F.1_g263880 Hydrangea macrophylla HOM05D006153 ORTHO05D007701 5.5e-13 77.8 92 50.0
Actinidia27982 Actinidia chinensis HOM05D006153 ORTHO05D007701 9.5e-13 77.0 97 46.4
Duzib132G0541 Durio zibethinus HOM05D006153 ORTHO05D007701 1.6e-12 76.3 61 57.4
ATR0030G019 Amborella trichopoda HOM05D006153 ORTHO05D007701 2.1e-12 75.9 46 69.6
CSS0010428 Camellia sinensis var. sinensis HOM05D006153 ORTHO05D007701 2.1e-12 75.9 106 41.5
COL.COLO4_32545 Corchorus olitorius HOM05D006153 ORTHO05D007701 2.1e-12 75.9 109 43.1
Peaxi162Scf00152g00320 Petunia axillaris HOM05D006153 ORTHO05D007701 2.1e-12 75.9 63 52.4
Lj1g0020403 Lotus japonicus HOM05D006153 ORTHO05D007701 2.7e-12 75.5 94 44.7
Potri.001G296900 Populus trichocarpa HOM05D006153 ORTHO05D007701 2.7e-12 75.5 53 60.4
Nitab4.5_0012681g0010 Nicotiana tabacum HOM05D006153 ORTHO05D007701 3.6e-12 75.1 61 55.7
GSVIVG01037871001 Vitis vinifera HOM05D006153 ORTHO05D007701 4.7e-12 74.7 102 44.1
Actinidia34374 Actinidia chinensis HOM05D006153 ORTHO05D007701 6.1e-12 74.3 103 41.7
Duzib052G0610 Durio zibethinus HOM05D006153 ORTHO05D007701 6.1e-12 74.3 73 49.3
GSVIVG01037873001 Vitis vinifera HOM05D006153 ORTHO05D007701 6.1e-12 74.3 56 60.7
Cpa.g.sc200.7 Carica papaya HOM05D006153 ORTHO05D007701 8.0e-12 73.9 48 68.8
Peaxi162Scf00016g00267 Petunia axillaris HOM05D006153 ORTHO05D007701 8.0e-12 73.9 93 43.0
Zm00001eb138020 Zea mays HOM05D006153 ORTHO05D007701 8.0e-12 73.9 80 46.2
Gohir.D13G044400 Gossypium hirsutum HOM05D006153 ORTHO05D007701 1.0e-11 73.6 104 40.4
Gorai.013G049200 Gossypium raimondii HOM05D006153 ORTHO05D007701 1.0e-11 73.6 104 40.4
Nitab4.5_0002017g0030 Nicotiana tabacum HOM05D006153 ORTHO05D007701 1.0e-11 73.6 65 49.2
Nitab4.5_0004685g0060 Nicotiana tabacum HOM05D006153 ORTHO05D007701 1.4e-11 73.2 59 54.2
Oeu013772.1 Olea europaea HOM05D006153 ORTHO05D007701 1.4e-11 73.2 62 48.4
DCAR_001679 Daucus carota HOM05D006153 ORTHO05D007701 1.8e-11 72.8 87 47.1
Nitab4.5_0001105g0220 Nicotiana tabacum HOM05D006153 ORTHO05D007701 1.8e-11 72.8 46 65.2
AT3G19550 Arabidopsis thaliana HOM05D006153 ORTHO05D007701 2.3e-11 72.4 73 50.7
Lj5g0020623 Lotus japonicus HOM05D006153 ORTHO05D007701 2.3e-11 72.4 45 64.4
MD10G1102200 Malus domestica HOM05D006153 ORTHO05D007701 2.3e-11 72.4 48 62.5
Potri.009G091100 Populus trichocarpa HOM05D006153 ORTHO05D007701 2.3e-11 72.4 53 56.6
GSVIVG01037872001 Vitis vinifera HOM05D006153 ORTHO05D007701 2.3e-11 72.4 56 58.9
Manes.10G074900 Manihot esculenta HOM05D006153 ORTHO05D007701 3.0e-11 72.0 62 54.8
Sabra16G0186000 Salix brachista HOM05D006153 ORTHO05D007701 3.0e-11 72.0 51 56.9
Nn5g30510 Nelumbo nucifera HOM05D006153 ORTHO05D007701 4.0e-11 71.6 87 40.2
Zm00001eb264740 Zea mays HOM05D006153 ORTHO05D007701 4.0e-11 71.6 48 64.6
AL3G32960 Arabidopsis lyrata HOM05D006153 ORTHO05D007701 5.2e-11 71.2 47 66.0
Glyma.10G259200 Glycine max HOM05D006153 ORTHO05D007701 5.2e-11 71.2 87 43.7
Solyc01g107280.3 Solanum lycopersicum HOM05D006153 ORTHO05D007701 5.2e-11 71.2 67 46.3
arahy.Tifrunner.gnm1.ann1.EHR7LK Arachis hypogaea HOM05D006153 ORTHO05D007701 6.8e-11 70.9 44 63.6
Ciclev10029838m.g Citrus clementina HOM05D006153 ORTHO05D007701 6.8e-11 70.9 64 51.6
Gohir.A01G008400 Gossypium hirsutum HOM05D006153 ORTHO05D007701 6.8e-11 70.9 113 39.8
Os12g0507700 Oryza sativa ssp. japonica HOM05D006153 ORTHO05D007701 6.8e-11 70.9 41 70.7
Prupe.8G140400 Prunus persica HOM05D006153 ORTHO05D007701 6.8e-11 70.9 54 55.6
Haze_10254 Corylus avellana HOM05D006153 ORTHO05D007701 8.8e-11 70.5 63 50.8
Lj5g0024415 Lotus japonicus HOM05D006153 ORTHO05D007701 8.8e-11 70.5 43 67.4
Eucgr.G00438 Eucalyptus grandis HOM05D006153 ORTHO05D007701 1.2e-10 70.1 61 45.9
MD05G1096000 Malus domestica HOM05D006153 ORTHO05D007701 1.2e-10 70.1 48 60.4
Peaxi162Scf00003g00261 Petunia axillaris HOM05D006153 ORTHO05D007701 1.2e-10 70.1 48 58.3
Sopen01g049530 Solanum pennellii HOM05D006153 ORTHO05D007701 1.2e-10 70.1 67 46.3
CiPaw.05G015200 Carya illinoinensis HOM05D006153 ORTHO05D007701 1.5e-10 69.7 59 54.2
Lalb_Chr06g0165291 Lupinus albus HOM05D006153 ORTHO05D007701 1.5e-10 69.7 63 52.4
Rhsim05G0089900 Rhododendron simsii HOM05D006153 ORTHO05D007701 1.5e-10 69.7 50 62.0
Glyma.20G131700 Glycine max HOM05D006153 ORTHO05D007701 2.0e-10 69.3 51 56.9
HanXRQChr16g0514461 Helianthus annuus HOM05D006153 ORTHO05D007701 2.6e-10 68.9 48 60.4
Aqoxy6G02750 Aquilegia oxysepala HOM05D000096 ORTHO05D000045 4.4e-10 68.2 49 69.4
CARHR094970 Cardamine hirsuta HOM05D006153 ORTHO05D007701 4.4e-10 68.2 47 63.8
Thhalv10021914m.g Eutrema salsugineum HOM05D006153 ORTHO05D007701 4.4e-10 68.2 102 39.2
A01p35140 Brassica napus HOM05D006153 ORTHO05D007701 5.7e-10 67.8 46 63.0
BraA01t03596Z Brassica rapa HOM05D006153 ORTHO05D007701 5.7e-10 67.8 46 63.0
VMungo0720G0345 Vigna mungo HOM05D006153 ORTHO05D007701 5.7e-10 67.8 44 65.9
Dinv15786 Davidia involucrata HOM05D006153 ORTHO05D007701 7.5e-10 67.4 74 48.6
Gorai.002G009800 Gossypium raimondii HOM05D006153 ORTHO05D007701 7.5e-10 67.4 108 37.0
Phvul.007G043000 Phaseolus vulgaris HOM05D006153 ORTHO05D007701 7.5e-10 67.4 49 59.2
CANSAT25G0942 Cannabis sativa HOM05D006153 ORTHO05D007701 9.8e-10 67.0 56 58.9
ClCG02G006680 Citrullus lanatus HOM05D006153 ORTHO05D007701 9.8e-10 67.0 58 55.2
MELO3C018509.2 Cucumis melo HOM05D006153 ORTHO05D007701 9.8e-10 67.0 72 44.4
CsaV3_7G007950 Cucumis sativus L. HOM05D006153 ORTHO05D007701 9.8e-10 67.0 75 44.0
QL11p029270 Quercus lobata HOM05D006153 ORTHO05D007701 9.8e-10 67.0 63 47.6
Sabra09G0070400 Salix brachista HOM05D006153 ORTHO05D007701 9.8e-10 67.0 59 47.5
BcaB06g26014 Brassica carinata HOM05D006153 ORTHO05D007701 1.3e-09 66.6 46 60.9
Carub.0003s1938 Capsella rubella HOM05D006153 ORTHO05D007701 1.3e-09 66.6 47 63.8
QL11p031990 Quercus lobata HOM05D006153 ORTHO05D007701 1.3e-09 66.6 60 51.7
FvH4_2g04480 Fragaria vesca HOM05D006153 ORTHO05D007701 1.7e-09 66.2 56 53.6
FAN24G1230 Fragaria x ananassa HOM05D006153 ORTHO05D007701 1.7e-09 66.2 56 53.6
HanXRQChr16g0514451 Helianthus annuus HOM05D006153 ORTHO05D007701 1.7e-09 66.2 44 61.4
HanXRQChr16g0514901 Helianthus annuus HOM05D006153 ORTHO05D007701 1.7e-09 66.2 75 41.3
BcaC05g28465 Brassica carinata HOM05D006153 ORTHO05D007701 2.2e-09 65.9 69 42.0
C05p45510 Brassica napus HOM05D006153 ORTHO05D007701 2.2e-09 65.9 69 42.0
BolC5t33274H Brassica oleracea HOM05D006153 ORTHO05D007701 2.2e-09 65.9 69 42.0
Sed0025917 Sechium edule HOM05D006153 ORTHO05D007701 2.2e-09 65.9 50 60.0
A05p30090 Brassica napus HOM05D006153 ORTHO05D007701 2.8e-09 65.5 46 58.7
BraA05t21849Z Brassica rapa HOM05D006153 ORTHO05D007701 2.8e-09 65.5 46 58.7
FAN20G1027 Fragaria x ananassa HOM05D006153 ORTHO05D007701 2.8e-09 65.5 56 51.8
FAN27G0726 Fragaria x ananassa HOM05D006153 ORTHO05D007701 2.8e-09 65.5 56 51.8
RcHm_v2.0_Chr6g0253971 Rosa chinensis HOM05D006153 ORTHO05D007701 2.8e-09 65.5 56 55.4
Sp3g17600 Schrenkiella parvula HOM05D006153 ORTHO05D007701 2.8e-09 65.5 46 60.9
PGSC0003DMG400025850 Solanum tuberosum HOM05D006153 ORTHO05D007701 2.8e-09 65.5 66 47.0
Cfa004655 Carpinus fangiana HOM05D006153 ORTHO05D007701 3.7e-09 65.1 51 54.9
Lsat_1_v5_gn_5_114460 Lactuca sativa HOM05D006153 ORTHO05D007701 3.7e-09 65.1 51 51.0
Aa31LG8G6290 Aethionema arabicum HOM05D006153 ORTHO05D007701 4.9e-09 64.7 56 53.6
HanXRQChr16g0514921 Helianthus annuus HOM05D006153 ORTHO05D007701 4.9e-09 64.7 37 67.6
Medtr5g005180 Medicago truncatula HOM05D006153 ORTHO05D007701 4.9e-09 64.7 67 46.3
DCAR_001674 Daucus carota HOM05D006153 ORTHO05D007701 6.3e-09 64.3 55 60.0
BcaB04g20696 Brassica carinata HOM05D006153 ORTHO05D007701 8.3e-09 63.9 104 36.5
Haze_10299 Corylus avellana HOM05D006153 ORTHO05D007701 8.3e-09 63.9 46 54.3
ECA234G4313 Erigeron canadensis HOM05D006153 ORTHO05D007701 8.3e-09 63.9 68 44.1
FAN15G1936 Fragaria x ananassa HOM05D006153 ORTHO05D007701 8.3e-09 63.9 56 53.6
TWI23G0900 Tripterygium wilfordii HOM05D006153 ORTHO05D007701 8.3e-09 63.9 63 54.0
Lalb_Chr02g0145121 Lupinus albus HOM05D006153 ORTHO05D007701 1.1e-08 63.5 46 58.7
A01p35130 Brassica napus HOM05D006153 ORTHO05D007701 1.4e-08 63.2 46 58.7
BraA01t03595Z Brassica rapa HOM05D006153 ORTHO05D007701 1.4e-08 63.2 46 58.7
Cfa004694 Carpinus fangiana HOM05D006153 ORTHO05D007701 1.4e-08 63.2 54 50.0
EL10Ac8g19360 Beta vulgaris HOM05D006153 ORTHO05D007701 1.8e-08 62.8 64 43.8
BcaB04g20697 Brassica carinata HOM05D006153 ORTHO05D007701 1.8e-08 62.8 107 39.3
ECA234G3366 Erigeron canadensis HOM05D006153 ORTHO05D007701 2.4e-08 62.4 51 51.0
Hund06709 Selenicereus undatus HOM05D006153 ORTHO05D007701 2.4e-08 62.4 62 46.8
TPR.G8325 Trifolium pratense HOM05D006153 ORTHO05D007701 2.4e-08 62.4 38 68.4
BcaC09g48920 Brassica carinata HOM05D006153 ORTHO05D007701 3.1e-08 62.0 52 53.8
C01p44580 Brassica napus HOM05D006153 ORTHO05D007701 3.1e-08 62.0 52 53.8
Cpa.g.sc2471.1 Carica papaya HOM05D008232 ORTHO05D010390 3.1e-08 62.0 73 43.8
DCAR_003609 Daucus carota HOM05D006153 ORTHO05D007701 4.1e-08 61.6 52 51.9
Thhalv10021904m.g Eutrema salsugineum HOM05D006153 ORTHO05D007701 4.1e-08 61.6 50 56.0
HanXRQChr13g0425861 Helianthus annuus HOM05D006153 ORTHO05D007701 5.4e-08 61.2 49 46.9
BolC1t04422H Brassica oleracea HOM05D006153 ORTHO05D007701 1.2e-07 60.1 52 51.9
Migut.I00275 Erythranthe guttata HOM05D006153 ORTHO05D007701 1.2e-07 60.1 37 62.2
Aqoxy7G03060 Aquilegia oxysepala HOM05D008232 ORTHO05D010390 1.6e-07 59.7 83 34.9
AUR62027357 Chenopodium quinoa HOM05D006153 ORTHO05D007701 2.0e-07 59.3 47 55.3
Haze_10289 Corylus avellana HOM05D006153 ORTHO05D007701 3.5e-07 58.5 96 32.3
Manes.06G016400 Manihot esculenta HOM05D008232 ORTHO05D010390 3.5e-07 58.5 65 41.5
Psat4g228040 Pisum sativum HOM05D006153 ORTHO05D007701 4.5e-07 58.2 37 64.9
TAR383G0592 Trochodendron aralioides HOM05D008232 ORTHO05D010390 4.5e-07 58.2 36 61.1
Ca_24350_v3 Cicer arietinum L. HOM05D006153 ORTHO05D007701 1.0e-06 57.0 37 62.2
Eucgr.G01281 Eucalyptus grandis HOM05D006153 ORTHO05D007701 2.3e-06 55.8 51 47.1
COL.COLO4_26749 Corchorus olitorius HOM05D008232 ORTHO05D010390 2.9e-06 55.5 40 55.0
Gohir.A13G045400 Gossypium hirsutum HOM05D006153 ORTHO05D007701 3.8e-06 55.1 79 40.5
CiPaw.03G112900 Carya illinoinensis HOM05D008232 ORTHO05D010390 5.0e-06 54.7 83 36.1
AUR62031329 Chenopodium quinoa HOM05D006153 ORTHO05D007701 5.0e-06 54.7 38 55.3
Duzib235G0354 Durio zibethinus HOM05D008232 ORTHO05D010390 6.6e-06 54.3 36 63.9
Atru.chr1.2756 Acer truncatum HOM05D008232 ORTHO05D010390 8.6e-06 53.9 42 57.1
PGR031G2543 Punica granatum HOM05D008232 ORTHO05D010390 8.6e-06 53.9 69 42.0
SGA_v2.0_scaffold624G53237 Striga asiatica HOM05D006153 ORTHO05D007701 8.6e-06 53.9 39 59.0


User provided reference genes

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