Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy6G02719 Aquilegia oxysepala HOM05D004032 ORTHO05D004462 4.6e-115 417.9 215 100.0
TAR376G0432 Trochodendron aralioides HOM05D004032 ORTHO05D004462 4.1e-55 218.8 218 61.0
Haze_15306 Corylus avellana HOM05D004032 ORTHO05D004462 1.5e-49 200.3 219 55.3
QL06p039858 Quercus lobata HOM05D004032 ORTHO05D004462 9.8e-49 197.6 216 53.7
GSVIVG01000145001 Vitis vinifera HOM05D004032 ORTHO05D004462 4.1e-47 192.2 218 53.7
CiPaw.01G006700 Carya illinoinensis HOM05D004032 ORTHO05D004462 8.6e-45 184.5 223 52.5
CiPaw.02G004200 Carya illinoinensis HOM05D004032 ORTHO05D004462 4.3e-44 182.2 224 51.8
Nn1g04611 Nelumbo nucifera HOM05D004032 ORTHO05D004462 1.6e-43 180.3 198 56.1
Dinv30069 Davidia involucrata HOM05D004032 ORTHO05D004462 8.1e-43 177.9 217 49.8
Potri.007G053300 Populus trichocarpa HOM05D004032 ORTHO05D004462 1.4e-42 177.2 218 50.0
Potri.005G145800 Populus trichocarpa HOM05D004032 ORTHO05D004462 8.9e-42 174.5 217 47.9
Prupe.6G223500 Prunus persica HOM05D004032 ORTHO05D004462 8.9e-42 174.5 235 51.9
Manes.12G111200 Manihot esculenta HOM05D004032 ORTHO05D004462 1.3e-40 170.6 222 48.6
TAR628G1371 Trochodendron aralioides HOM05D004032 ORTHO05D004462 6.4e-40 168.3 209 50.2
Duzib187G1312 Durio zibethinus HOM05D004032 ORTHO05D004462 3.2e-39 166.0 221 47.5
Glyma.05G103900 Glycine max HOM05D004032 ORTHO05D004462 7.1e-39 164.9 217 47.0
VMungo0251G2494 Vigna mungo HOM05D004032 ORTHO05D004462 1.2e-38 164.1 216 46.8
CSS0031607 Camellia sinensis var. sinensis HOM05D004032 ORTHO05D004462 2.1e-38 163.3 223 47.5
CSS0002661 Camellia sinensis var. sinensis HOM05D004032 ORTHO05D004462 2.7e-38 162.9 223 47.5
Glyma.17G163400 Glycine max HOM05D004032 ORTHO05D004462 2.7e-38 162.9 208 46.6
Phvul.003G236700 Phaseolus vulgaris HOM05D004032 ORTHO05D004462 2.7e-38 162.9 216 47.2
Duzib147G1493 Durio zibethinus HOM05D004032 ORTHO05D004462 3.5e-38 162.5 219 46.6
Manes.13G113400 Manihot esculenta HOM05D004032 ORTHO05D004462 4.6e-38 162.2 220 47.7
Oeu013283.1 Olea europaea HOM05D004032 ORTHO05D004462 1.7e-37 160.2 222 48.6
Thecc.01G069300 Theobroma cacao HOM05D004032 ORTHO05D004462 2.3e-37 159.8 221 46.6
DCAR_010831 Daucus carota HOM05D004032 ORTHO05D004462 8.6e-37 157.9 217 49.3
Gohir.D11G206500 Gossypium hirsutum HOM05D004032 ORTHO05D004462 2.1e-35 153.3 228 46.5
Gorai.007G221700 Gossypium raimondii HOM05D004032 ORTHO05D004462 2.1e-35 153.3 226 46.5
Gohir.A11G216800 Gossypium hirsutum HOM05D004032 ORTHO05D004462 3.6e-35 152.5 228 46.1
Hma1.2p1_0942F.1_g239820 Hydrangea macrophylla HOM05D004032 ORTHO05D004462 3.6e-35 152.5 219 46.1
DCAR_025783 Daucus carota HOM05D004032 ORTHO05D004462 4.7e-35 152.1 222 45.0
TPR.G23878 Trifolium pratense HOM05D004032 ORTHO05D004462 3.1e-34 149.4 217 44.7
Ciclev10026503m.g Citrus clementina HOM05D004032 ORTHO05D004462 8.9e-34 147.9 219 46.6
Oeu031172.1 Olea europaea HOM05D004032 ORTHO05D004462 1.2e-33 147.5 220 47.7
Oeu031171.1 Olea europaea HOM05D004032 ORTHO05D004462 1.5e-33 147.1 220 47.7
Glyma.11G049700 Glycine max HOM05D004032 ORTHO05D004462 2.6e-33 146.4 218 43.6
Glyma.01G192400 Glycine max HOM05D004032 ORTHO05D004462 1.3e-32 144.1 214 41.6
Medtr4g095440 Medicago truncatula HOM05D004032 ORTHO05D004462 1.3e-32 144.1 217 42.4
Sabra05G0116500 Salix brachista HOM05D004032 ORTHO05D004462 1.7e-32 143.7 217 45.6
Lalb_Chr05g0213571 Lupinus albus HOM05D004032 ORTHO05D004462 6.4e-32 141.7 218 44.0
Lj4g0009335 Lotus japonicus HOM05D004032 ORTHO05D004462 1.1e-31 141.0 216 45.8
RcHm_v2.0_Chr2g0107481 Rosa chinensis HOM05D004032 ORTHO05D004462 1.1e-31 141.0 218 47.2
Cc07_g06860 Coffea canephora HOM05D004032 ORTHO05D004462 2.4e-31 139.8 222 42.8
TWI09G0556 Tripterygium wilfordii HOM05D004032 ORTHO05D004462 2.4e-31 139.8 219 45.2
Psat4g083520 Pisum sativum HOM05D004032 ORTHO05D004462 5.4e-31 138.7 219 42.0
Dinv26906 Davidia involucrata HOM05D004032 ORTHO05D004462 7.1e-31 138.3 219 44.7
CSS0022714 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D004462 9.2e-31 137.9 191 47.1
FAN28G1831 Fragaria x ananassa HOM05D004032 ORTHO05D004462 2.7e-30 136.3 218 45.9
PSO541G5875 Papaver somniferum HOM05D004032 ORTHO05D004462 4.6e-30 135.6 226 42.5
CSS0026387 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D004462 1.3e-29 134.0 194 45.9
Nn5g30527 Nelumbo nucifera HOM05D004032 ORTHO05D004462 1.3e-29 134.0 131 59.5
vmacro05391 Vaccinium macrocarpon HOM05D004032 ORTHO05D004462 6.6e-29 131.7 218 43.1
COL.COLO4_11544 Corchorus olitorius HOM05D004032 ORTHO05D004462 1.1e-28 131.0 220 42.7
FvH4_1g17290 Fragaria vesca HOM05D004032 ORTHO05D004462 4.3e-28 129.0 218 44.5
FAN19G2997 Fragaria x ananassa HOM05D004032 ORTHO05D004462 4.3e-28 129.0 218 44.5
Nitab4.5_0000868g0010 Nicotiana tabacum HOM05D004032 ORTHO05D004462 5.6e-28 128.6 219 44.3
Eucgr.I00716 Eucalyptus grandis HOM05D004032 ORTHO05D004462 3.6e-27 125.9 224 43.3
Cpa.g.sc6.44 Carica papaya HOM05D004032 ORTHO05D004462 6.2e-27 125.2 228 41.2
HPP92_023674 Vanilla planifolia HOM05D004032 ORTHO05D004462 1.8e-26 123.6 214 40.7
Actinidia16438 Actinidia chinensis HOM05D004032 ORTHO05D004462 3.1e-26 122.9 213 41.3
Oeu040591.1 Olea europaea HOM05D004032 ORTHO05D004462 3.1e-26 122.9 215 41.4
Oeu040592.1 Olea europaea HOM05D004032 ORTHO05D004462 3.1e-26 122.9 215 41.4
vmacro17992 Vaccinium macrocarpon HOM05D004032 ORTHO05D004462 4.0e-26 122.5 217 44.2
Gorai.003G028900 Gossypium raimondii HOM05D004032 ORTHO05D004462 5.2e-26 122.1 222 43.7
PSO675G6353 Papaver somniferum HOM05D004032 ORTHO05D004462 5.2e-26 122.1 222 40.1
Gohir.A02G153200 Gossypium hirsutum HOM05D004032 ORTHO05D004462 8.9e-26 121.3 222 43.2
Lalb_Chr09g0334051 Lupinus albus HOM05D004032 ORTHO05D004462 8.9e-26 121.3 206 38.8
HPP92_023691 Vanilla planifolia HOM05D004032 ORTHO05D004462 8.9e-26 121.3 214 39.3
Oeu054187.1 Olea europaea HOM05D004032 ORTHO05D004462 1.2e-25 120.9 215 41.4
TWI53G0135 Tripterygium wilfordii HOM05D004032 ORTHO05D004462 1.2e-25 120.9 216 41.2
MSTRG.2833 Avicennia marina HOM05D004032 ORTHO05D004462 1.5e-25 120.6 221 41.6
Gohir.D03G027200 Gossypium hirsutum HOM05D004032 ORTHO05D004462 2.0e-25 120.2 222 44.6
MSTRG.23688 Avicennia marina HOM05D004032 ORTHO05D004462 1.7e-24 117.1 223 42.6
Lalb_Chr16g0389141 Lupinus albus HOM05D004032 ORTHO05D004462 2.9e-24 116.3 216 38.9
Rhsim08G0095200 Rhododendron simsii HOM05D004032 ORTHO05D004462 3.8e-24 115.9 216 40.7
Rhsim10G0102400 Rhododendron simsii HOM05D004032 ORTHO05D004462 3.8e-24 115.9 222 41.4
Actinidia21232 Actinidia chinensis HOM05D004032 ORTHO05D004462 6.4e-24 115.2 140 49.3
Solyc02g092590.3 Solanum lycopersicum HOM05D004032 ORTHO05D004462 8.4e-24 114.8 226 38.1
Sopen02g037160 Solanum pennellii HOM05D004032 ORTHO05D004462 1.1e-23 114.4 226 38.1
Peaxi162Scf00264g00213 Petunia axillaris HOM05D004032 ORTHO05D004462 3.2e-23 112.8 232 37.5
CAN.G1075.18 Capsicum annuum HOM05D004032 ORTHO05D004462 4.2e-23 112.5 229 39.3
HanXRQChr12g0373191 Helianthus annuus HOM05D004032 ORTHO05D004462 1.2e-22 110.9 222 41.4
MD15G1293900 Malus domestica HOM05D004032 ORTHO05D004462 2.7e-22 109.8 246 39.4
Actinidia11994 Actinidia chinensis HOM05D004032 ORTHO05D004462 4.6e-22 109.0 141 48.9
Actinidia36441 Actinidia chinensis HOM05D004032 ORTHO05D004462 4.6e-22 109.0 217 39.2
MD02G1182600 Malus domestica HOM05D004032 ORTHO05D004462 2.3e-21 106.7 245 40.0
TWI73G0275 Tripterygium wilfordii HOM05D004032 ORTHO05D004462 2.3e-21 106.7 214 38.3
CsaV3_6G043920 Cucumis sativus L. HOM05D004032 ORTHO05D004462 5.1e-21 105.5 219 37.4
PGSC0003DMG400024938 Solanum tuberosum HOM05D004032 ORTHO05D004462 1.1e-20 104.4 225 37.8
HanXRQChr11g0322451 Helianthus annuus HOM05D004032 ORTHO05D004462 1.5e-20 104.0 223 39.5
Lj2g0017817 Lotus japonicus HOM05D004032 ORTHO05D004462 1.9e-20 103.6 204 39.7
Gohir.A10G090100 Gossypium hirsutum HOM05D004032 ORTHO05D004462 7.3e-20 101.7 215 36.7
Phvul.002G012400 Phaseolus vulgaris HOM05D004032 ORTHO05D004462 7.3e-20 101.7 166 41.6
ClCG01G017390 Citrullus lanatus HOM05D004032 ORTHO05D004462 2.1e-19 100.1 219 37.0
Gohir.D10G098000 Gossypium hirsutum HOM05D004032 ORTHO05D004462 3.6e-19 99.4 215 35.8
PGR004G0357 Punica granatum HOM05D004032 ORTHO05D004462 3.6e-19 99.4 217 37.8
Glyma.15G185500 Glycine max HOM05D004032 ORTHO05D004462 4.8e-19 99.0 213 34.3
Lsat_1_v5_gn_4_162340 Lactuca sativa HOM05D004032 ORTHO05D004462 6.2e-19 98.6 220 40.5
Lj7A88G34 Lonicera japonica HOM05D004032 ORTHO05D004462 6.2e-19 98.6 192 39.6
Gorai.011G107600 Gossypium raimondii HOM05D004032 ORTHO05D004462 6.9e-18 95.1 215 35.8
ECA232G3054 Erigeron canadensis HOM05D004032 ORTHO05D004462 9.0e-18 94.7 217 39.2
FAN26G2221 Fragaria x ananassa HOM05D004032 ORTHO05D004462 1.2e-17 94.4 217 37.8
VMungo1215G3265 Vigna mungo HOM05D004032 ORTHO05D004462 1.2e-17 94.4 166 40.4
Migut.H00365 Erythranthe guttata HOM05D004032 ORTHO05D004462 2.0e-17 93.6 225 36.0
SGA_v2.0_scaffold15G07422 Striga asiatica HOM05D004032 ORTHO05D004462 2.0e-17 93.6 217 35.9
ATR0030G044 Amborella trichopoda HOM05D004032 ORTHO05D004462 2.6e-17 93.2 233 34.8
arahy.Tifrunner.gnm1.ann1.L7L2H1 Arachis hypogaea HOM05D004032 ORTHO05D004462 3.4e-17 92.8 219 37.0
AL8G43930 Arabidopsis lyrata HOM05D004032 ORTHO05D004462 5.8e-17 92.0 144 43.8
arahy.Tifrunner.gnm1.ann1.7C4JLW Arachis hypogaea HOM05D004032 ORTHO05D004462 9.9e-17 91.3 219 37.0
AT5G67390 Arabidopsis thaliana HOM05D004032 ORTHO05D004462 2.2e-16 90.1 118 48.3
BcaB04g20056 Brassica carinata HOM05D004032 ORTHO05D004462 6.4e-16 88.6 176 42.6
Sed0022630 Sechium edule HOM05D004032 ORTHO05D004462 6.4e-16 88.6 216 36.1
Thhalv10005011m.g Eutrema salsugineum HOM05D004032 ORTHO05D004462 1.1e-15 87.8 118 47.5
FAN23G1545 Fragaria x ananassa HOM05D004032 ORTHO05D004462 1.1e-15 87.8 216 35.6
Atru.chr3.163 Acer truncatum HOM05D004032 ORTHO05D004462 3.2e-15 86.3 226 33.2
CDE02G2979 Ceratophyllum demersum HOM05D000039 ORTHO05D000870 3.2e-15 86.3 218 34.4
ECA238G1032 Erigeron canadensis HOM05D004032 ORTHO05D004462 3.2e-15 86.3 154 42.9
Hma1.2p1_0017F.1_g012150 Hydrangea macrophylla HOM05D004032 ORTHO05D004462 3.2e-15 86.3 210 34.8
A02p44240 Brassica napus HOM05D004032 ORTHO05D004462 4.2e-15 85.9 159 42.1
BraA02t09348Z Brassica rapa HOM05D004032 ORTHO05D004462 4.2e-15 85.9 159 42.1
Ah.02g125580 Amaranthus hybridus HOM05D004032 ORTHO05D004462 5.4e-15 85.5 211 37.0
Hund13934 Selenicereus undatus HOM05D004032 ORTHO05D004462 5.4e-15 85.5 230 31.7
Aa31LG1G15950 Aethionema arabicum HOM05D004032 ORTHO05D004462 1.2e-14 84.3 158 41.8
BcaC03g18375 Brassica carinata HOM05D004032 ORTHO05D004462 1.6e-14 84.0 159 40.9
C02p64510 Brassica napus HOM05D004032 ORTHO05D004462 1.6e-14 84.0 159 40.9
BolC2t12515H Brassica oleracea HOM05D004032 ORTHO05D004462 1.6e-14 84.0 159 40.9
Lj4A160G62 Lonicera japonica HOM05D004032 ORTHO05D004462 1.6e-14 84.0 145 39.3
CARHR280210 Cardamine hirsuta HOM05D004032 ORTHO05D004462 2.1e-14 83.6 117 46.2
Sp2g29270 Schrenkiella parvula HOM05D004032 ORTHO05D004462 2.1e-14 83.6 119 45.4
Hund16386 Selenicereus undatus HOM05D004032 ORTHO05D004462 2.7e-14 83.2 225 36.4
SalBow6G2131 Salvia bowleyana HOM05D004032 ORTHO05D004462 3.5e-14 82.8 218 31.7
Sc16g0000080 Simmondsia chinensis HOM05D004032 ORTHO05D004462 1.0e-13 81.3 244 29.9
Atru.chr3.192 Acer truncatum HOM05D004032 ORTHO05D004462 1.3e-13 80.9 226 32.3
HanXRQChr14g0441881 Helianthus annuus HOM05D004032 ORTHO05D004462 2.3e-13 80.1 147 40.8
BcaB02g09927 Brassica carinata HOM05D004032 ORTHO05D004462 5.1e-13 79.0 117 46.2
Carub.0008s2709 Capsella rubella HOM05D004032 ORTHO05D004462 6.7e-13 78.6 116 46.6
Lsat_1_v5_gn_2_83781 Lactuca sativa HOM05D004032 ORTHO05D004462 6.7e-13 78.6 206 35.0
C07p24210 Brassica napus HOM05D004032 ORTHO05D004462 8.7e-13 78.2 135 40.7
BolC7t42948H Brassica oleracea HOM05D004032 ORTHO05D004462 8.7e-13 78.2 135 40.7
CANSAT01G2482 Cannabis sativa HOM05D004032 ORTHO05D004462 1.1e-12 77.8 246 32.9
THA.LOC104819252 Tarenaya hassleriana HOM05D004032 ORTHO05D004462 1.1e-12 77.8 181 38.7
A07p16510 Brassica napus HOM05D004032 ORTHO05D004462 1.5e-12 77.4 116 44.8
BraA07t29375Z Brassica rapa HOM05D004032 ORTHO05D004462 1.5e-12 77.4 116 44.8
A09p09370 Brassica napus HOM05D004032 ORTHO05D004462 2.5e-12 76.6 156 39.7
BcaC06g34822 Brassica carinata HOM05D004032 ORTHO05D004462 3.3e-12 76.3 116 44.8
BcaC04g23221 Brassica carinata HOM05D004032 ORTHO05D004462 4.3e-12 75.9 155 39.4
BolC9t53989H Brassica oleracea HOM05D004032 ORTHO05D004462 4.3e-12 75.9 155 39.4
BraA09t36588Z Brassica rapa HOM05D004032 ORTHO05D004462 4.3e-12 75.9 155 39.4
Sed0016234 Sechium edule HOM05D004032 ORTHO05D004462 4.3e-12 75.9 207 32.9
C09p10940 Brassica napus HOM05D004032 ORTHO05D004462 7.4e-12 75.1 155 40.6
Sed0024584 Sechium edule HOM05D004032 ORTHO05D004462 9.6e-12 74.7 212 34.9
THA.LOC104827558 Tarenaya hassleriana HOM05D004032 ORTHO05D004462 9.6e-12 74.7 116 44.8
THA.LOC104821233 Tarenaya hassleriana HOM05D004032 ORTHO05D004462 1.6e-11 73.9 122 46.7
EL10Ac6g15646 Beta vulgaris HOM05D004032 ORTHO05D004462 4.0e-10 69.3 253 30.4
Nitab4.5_0006689g0040 Nicotiana tabacum HOM05D004032 ORTHO05D004462 9.0e-10 68.2 49 69.4
arahy.Tifrunner.gnm1.ann1.4VG7J5 Arachis hypogaea HOM05D004032 ORTHO05D004462 2.0e-09 67.0 230 30.4
Os03g0604566 Oryza sativa ssp. japonica HOM05D004032 ORTHO05D004462 1.7e-08 63.9 96 43.8
SGA_v2.0_scaffold72G24091 Striga asiatica HOM05D004032 ORTHO05D004462 2.2e-08 63.5 127 35.4
Os03g0762100 Oryza sativa ssp. japonica HOM05D004032 ORTHO05D004462 1.9e-07 60.5 48 56.2
arahy.Tifrunner.gnm1.ann1.NPYP4Z Arachis hypogaea HOM05D004032 ORTHO05D004462 3.2e-07 59.7 150 31.3
ClCG02G012390 Citrullus lanatus HOM05D004032 ORTHO05D004462 4.2e-07 59.3 39 66.7
MELO3C020862.2 Cucumis melo HOM05D004032 ORTHO05D004462 9.3e-07 58.2 39 66.7
HPP92_007856 Vanilla planifolia HOM05D004032 ORTHO05D004462 9.3e-07 58.2 163 31.9
Nitab4.5_0000651g0050 Nicotiana tabacum HOM05D004032 ORTHO05D004462 1.6e-06 57.4 157 32.5
HPP92_018370 Vanilla planifolia HOM05D007665 ORTHO05D008293 2.1e-06 57.0 48 54.2
CsaV3_2G016520 Cucumis sativus L. HOM05D004032 ORTHO05D004462 2.7e-06 56.6 110 35.5
Os03g0442900 Oryza sativa ssp. japonica HOM05D004032 ORTHO05D004462 2.7e-06 56.6 212 30.7
Zm00001eb134870 Zea mays HOM05D004032 ORTHO05D004462 3.5e-06 56.2 216 31.5
MELO3C007617.2 Cucumis melo HOM05D004032 ORTHO05D004462 7.9e-06 55.1 199 30.7
Zm00001eb058240 Zea mays HOM05D004032 ORTHO05D004462 7.9e-06 55.1 38 63.2
Zm00001eb214280 Zea mays HOM05D004032 ORTHO05D004462 7.9e-06 55.1 47 53.2


User provided reference genes

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