Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy6G02718 Aquilegia oxysepala HOM05D002570 ORTHO05D002689 3.3e-48 194.5 86 100.0
Hma1.2p1_0819F.1_g223830 Hydrangea macrophylla HOM05D002570 ORTHO05D002689 2.2e-20 102.1 84 45.2
TAR376G0812 Trochodendron aralioides HOM05D002570 ORTHO05D002689 1.2e-18 96.3 85 43.5
QL12p037631 Quercus lobata HOM05D002570 ORTHO05D002689 8.0e-18 93.6 84 42.9
TAR381G0312 Trochodendron aralioides HOM05D002570 ORTHO05D002689 8.8e-17 90.1 73 50.7
GSVIVG01009363001 Vitis vinifera HOM05D002570 ORTHO05D002689 5.7e-16 87.4 88 40.9
TAR628G0321 Trochodendron aralioides HOM05D002570 ORTHO05D002689 7.5e-16 87.0 84 41.7
TAR381G1276 Trochodendron aralioides HOM05D001633 ORTHO05D002880 9.8e-16 86.7 70 50.0
CSS0011900 Camellia sinensis var. sinensis HOM05D002570 ORTHO05D002689 1.7e-15 85.9 84 42.9
vmacro21448 Vaccinium macrocarpon HOM05D002570 ORTHO05D002689 1.7e-15 85.9 84 42.9
PGR083G0844 Punica granatum HOM05D002570 ORTHO05D002689 2.8e-15 85.1 87 42.5
Thecc.08G091100 Theobroma cacao HOM05D002570 ORTHO05D002689 2.8e-15 85.1 84 40.5
TWI56G1429 Tripterygium wilfordii HOM05D002570 ORTHO05D002689 2.8e-15 85.1 84 36.9
Rhsim07G0221300 Rhododendron simsii HOM05D002570 ORTHO05D002689 3.1e-14 81.6 79 41.8
Glyma.19G015500 Glycine max HOM05D002570 ORTHO05D002689 4.1e-14 81.3 88 34.1
Nn5g30532 Nelumbo nucifera HOM05D002570 ORTHO05D002689 7.0e-14 80.5 83 39.8
Cc10_g05610 Coffea canephora HOM05D002570 ORTHO05D002689 9.1e-14 80.1 87 42.5
Manes.18G044800 Manihot esculenta HOM05D002570 ORTHO05D002689 1.2e-13 79.7 85 37.6
Gohir.D05G211800 Gossypium hirsutum HOM05D002570 ORTHO05D002689 2.0e-13 79.0 76 44.7
Duzib116G0240 Durio zibethinus HOM05D002570 ORTHO05D002689 5.9e-13 77.4 76 40.8
Nn1g04609 Nelumbo nucifera HOM05D002570 ORTHO05D002689 7.7e-13 77.0 87 37.9
Gohir.A02G081500 Gossypium hirsutum HOM05D002570 ORTHO05D002689 1.0e-12 76.6 88 37.5
Gohir.D02G089132 Gossypium hirsutum HOM05D002570 ORTHO05D002689 1.0e-12 76.6 88 37.5
vmacro22064 Vaccinium macrocarpon HOM05D002570 ORTHO05D002689 1.0e-12 76.6 81 39.5
Atru.chr13.811 Acer truncatum HOM05D002570 ORTHO05D002689 1.3e-12 76.3 76 38.2
MBI16_g22819_MAGBIO Magnolia biondii HOM05D002570 ORTHO05D002689 1.3e-12 76.3 84 35.7
Nn8g40408 Nelumbo nucifera HOM05D002570 ORTHO05D002689 1.3e-12 76.3 80 37.5
Gohir.A05G208300 Gossypium hirsutum HOM05D002570 ORTHO05D002689 2.3e-12 75.5 83 42.2
Gorai.005G099800 Gossypium raimondii HOM05D002570 ORTHO05D002689 2.9e-12 75.1 88 36.4
Gorai.009G218400 Gossypium raimondii HOM05D002570 ORTHO05D002689 2.9e-12 75.1 78 44.9
C07p25720 Brassica napus HOM05D002570 ORTHO05D002689 3.8e-12 74.7 78 42.3
BcaC06g34677 Brassica carinata HOM05D002570 ORTHO05D002689 5.0e-12 74.3 78 41.0
BolC7t43091H Brassica oleracea HOM05D002570 ORTHO05D002689 5.0e-12 74.3 78 41.0
HPP92_012494 Vanilla planifolia HOM05D002570 ORTHO05D002689 5.0e-12 74.3 68 42.6
Dinv13685 Davidia involucrata HOM05D002570 ORTHO05D002689 6.6e-12 73.9 80 36.2
Dinv21443 Davidia involucrata HOM05D002570 ORTHO05D002689 6.6e-12 73.9 80 36.2
Cc04_g05480 Coffea canephora HOM05D002570 ORTHO05D002689 8.6e-12 73.6 81 38.3
BcaC06g31719 Brassica carinata HOM05D002570 ORTHO05D002689 1.1e-11 73.2 78 39.7
Migut.N02768 Erythranthe guttata HOM05D002570 ORTHO05D002689 1.1e-11 73.2 85 36.5
Hma1.2p1_0177F.1_g077950 Hydrangea macrophylla HOM05D002570 ORTHO05D002689 1.1e-11 73.2 56 48.2
ATR0030G054 Amborella trichopoda HOM05D002570 ORTHO05D002689 1.5e-11 72.8 74 40.5
PSO170G3310 Papaver somniferum HOM05D002570 ORTHO05D002689 1.5e-11 72.8 61 42.6
Eucgr.F00117 Eucalyptus grandis HOM05D002570 ORTHO05D002689 1.9e-11 72.4 82 34.1
CiPaw.07G176800 Carya illinoinensis HOM05D002570 ORTHO05D002689 2.5e-11 72.0 84 36.9
PSO017G5699 Papaver somniferum HOM05D002570 ORTHO05D002689 2.5e-11 72.0 60 43.3
Lj2g0012585 Lotus japonicus HOM05D002570 ORTHO05D002689 3.3e-11 71.6 77 37.7
Manes.05G180500 Manihot esculenta HOM05D002570 ORTHO05D002689 3.3e-11 71.6 85 36.5
Nitab4.5_0000934g0050 Nicotiana tabacum HOM05D002570 ORTHO05D002689 3.3e-11 71.6 85 36.5
Nitab4.5_0011511g0020 Nicotiana tabacum HOM05D002570 ORTHO05D002689 3.3e-11 71.6 85 36.5
A06p48010 Brassica napus HOM05D002570 ORTHO05D002689 4.2e-11 71.2 77 39.0
BraA06t27671Z Brassica rapa HOM05D002570 ORTHO05D002689 4.2e-11 71.2 77 39.0
Sc05g0001400 Simmondsia chinensis HOM05D002570 ORTHO05D002689 4.2e-11 71.2 76 36.8
HPP92_015713 Vanilla planifolia HOM05D002570 ORTHO05D002689 4.2e-11 71.2 68 38.2
Zm00001eb400620 Zea mays HOM05D002570 ORTHO05D002689 4.2e-11 71.2 62 45.2
Hma1.2p1_1208F.1_g267175 Hydrangea macrophylla HOM05D002570 ORTHO05D002689 5.5e-11 70.9 80 33.8
Sc15g0005580 Simmondsia chinensis HOM05D002570 ORTHO05D002689 5.5e-11 70.9 72 41.7
Peaxi162Scf00081g01321 Petunia axillaris HOM05D002570 ORTHO05D002689 7.2e-11 70.5 84 35.7
Sed0024363 Sechium edule HOM05D002570 ORTHO05D002689 7.2e-11 70.5 83 39.8
Solyc03g117840.4 Solanum lycopersicum HOM05D002570 ORTHO05D002689 7.2e-11 70.5 79 35.4
Sopen03g036750 Solanum pennellii HOM05D002570 ORTHO05D002689 7.2e-11 70.5 79 35.4
Thecc.06G132900 Theobroma cacao HOM05D002570 ORTHO05D002689 7.2e-11 70.5 80 35.0
Eucgr.J03139 Eucalyptus grandis HOM05D002570 ORTHO05D002689 9.5e-11 70.1 80 32.5
Sc02g0007790 Simmondsia chinensis HOM05D002570 ORTHO05D002689 9.5e-11 70.1 82 37.8
CARHR180760 Cardamine hirsuta HOM05D002570 ORTHO05D002689 1.2e-10 69.7 75 38.7
Sp2g07930 Schrenkiella parvula HOM05D002570 ORTHO05D002689 1.2e-10 69.7 83 37.3
Nitab4.5_0004194g0090 Nicotiana tabacum HOM05D002570 ORTHO05D002689 1.6e-10 69.3 78 34.6
Nitab4.5_0007293g0020 Nicotiana tabacum HOM05D002570 ORTHO05D002689 1.6e-10 69.3 78 34.6
Zm00001eb400610 Zea mays HOM05D002570 ORTHO05D002689 1.6e-10 69.3 52 51.9
CAN.G1008.23 Capsicum annuum HOM05D002570 ORTHO05D002689 2.1e-10 68.9 79 34.2
Thhalv10003296m.g Eutrema salsugineum HOM05D002570 ORTHO05D002689 2.1e-10 68.9 81 37.0
Medtr6g008680 Medicago truncatula HOM05D002570 ORTHO05D002689 2.1e-10 68.9 80 35.0
PGR102G1262 Punica granatum HOM05D002570 ORTHO05D002689 2.1e-10 68.9 81 37.0
Rhsim08G0200900 Rhododendron simsii HOM05D002570 ORTHO05D002689 2.1e-10 68.9 81 34.6
Aqoxy5G00897 Aquilegia oxysepala HOM05D002570 ORTHO05D002689 2.8e-10 68.6 53 49.1
SalBow7G3896 Salvia bowleyana HOM05D002570 ORTHO05D002689 2.8e-10 68.6 69 42.0
AT5G43150 Arabidopsis thaliana HOM05D002570 ORTHO05D002689 3.6e-10 68.2 76 38.2
CSS0011601 Camellia sinensis var. sinensis HOM05D002570 ORTHO05D002689 3.6e-10 68.2 79 35.4
CSS0038527 Camellia sinensis var. sinensis HOM05D002570 ORTHO05D002689 3.6e-10 68.2 79 35.4
COL.COLO4_30895 Corchorus olitorius HOM05D002570 ORTHO05D002689 3.6e-10 68.2 80 33.8
MBI14_g19442_MAGBIO Magnolia biondii HOM05D002570 ORTHO05D002689 3.6e-10 68.2 83 36.1
PGSC0003DMG400014220 Solanum tuberosum HOM05D002570 ORTHO05D002689 3.6e-10 68.2 79 34.2
A02p27670 Brassica napus HOM05D002570 ORTHO05D002689 4.7e-10 67.8 79 39.2
BraA02t07806Z Brassica rapa HOM05D002570 ORTHO05D002689 4.7e-10 67.8 79 39.2
Carub.0008s0556 Capsella rubella HOM05D002570 ORTHO05D002689 4.7e-10 67.8 75 36.0
Glyma.13G068400 Glycine max HOM05D002570 ORTHO05D002689 4.7e-10 67.8 92 29.3
Manes.11G071400 Manihot esculenta HOM05D002570 ORTHO05D002689 4.7e-10 67.8 80 31.2
MELO3C032377.2 Cucumis melo HOM05D002570 ORTHO05D002689 6.1e-10 67.4 66 42.4
Lsat_1_v5_gn_1_30640 Lactuca sativa HOM05D002570 ORTHO05D002689 6.1e-10 67.4 85 36.5
Phvul.005G184200 Phaseolus vulgaris HOM05D002570 ORTHO05D002689 6.1e-10 67.4 80 37.5
Ciclev10002925m.g Citrus clementina HOM05D002570 ORTHO05D002689 8.0e-10 67.0 95 34.7
THA.LOC104825766 Tarenaya hassleriana HOM05D002570 ORTHO05D002689 8.0e-10 67.0 84 35.7
TPR.G32582 Trifolium pratense HOM05D002570 ORTHO05D002689 8.0e-10 67.0 79 36.7
Ciclev10026849m.g Citrus clementina HOM05D002570 ORTHO05D002689 1.0e-09 66.6 80 35.0
HPP92_026648 Vanilla planifolia HOM05D002570 ORTHO05D002689 1.0e-09 66.6 87 33.3
Zm00001eb007320 Zea mays HOM05D002570 ORTHO05D002689 1.0e-09 66.6 52 50.0
Psat1g078440 Pisum sativum HOM05D002570 ORTHO05D002689 1.4e-09 66.2 82 35.4
Prupe.1G424900 Prunus persica HOM05D002570 ORTHO05D002689 1.4e-09 66.2 82 39.0
vmacro19088 Vaccinium macrocarpon HOM05D002570 ORTHO05D002689 1.4e-09 66.2 80 36.2
Aa31LG9G13240 Aethionema arabicum HOM05D002570 ORTHO05D002689 1.8e-09 65.9 71 38.0
BcaB07g30593 Brassica carinata HOM05D002570 ORTHO05D002689 2.3e-09 65.5 81 34.6
MBI16_g27293_MAGBIO Magnolia biondii HOM05D002570 ORTHO05D002689 2.3e-09 65.5 81 34.6
Actinidia08926 Actinidia chinensis HOM05D002570 ORTHO05D002689 4.0e-09 64.7 83 31.3
Gohir.D10G050000 Gossypium hirsutum HOM05D002570 ORTHO05D002689 4.0e-09 64.7 80 32.5
Gorai.011G053600 Gossypium raimondii HOM05D002570 ORTHO05D002689 4.0e-09 64.7 80 32.5
QL05p081283 Quercus lobata HOM05D002570 ORTHO05D002689 4.0e-09 64.7 80 33.8
Duzib041G0717 Durio zibethinus HOM05D002570 ORTHO05D002689 5.2e-09 64.3 84 36.9
Lsat_1_v5_gn_4_130881 Lactuca sativa HOM05D002570 ORTHO05D002689 5.2e-09 64.3 66 36.4
Lj3g0010275 Lotus japonicus HOM05D002570 ORTHO05D002689 5.2e-09 64.3 80 35.0
Potri.001G037400 Populus trichocarpa HOM05D002570 ORTHO05D002689 5.2e-09 64.3 80 32.5
GSVIVG01016063001 Vitis vinifera HOM05D002570 ORTHO05D002689 5.2e-09 64.3 81 37.0
MELO3C023490.2 Cucumis melo HOM05D002570 ORTHO05D002689 6.8e-09 63.9 80 32.5
arahy.Tifrunner.gnm1.ann1.N56UGC Arachis hypogaea HOM05D002570 ORTHO05D002689 8.9e-09 63.5 85 32.9
CsaV3_7G031670 Cucumis sativus L. HOM05D002570 ORTHO05D002689 8.9e-09 63.5 80 32.5
Dinv23257 Davidia involucrata HOM05D002570 ORTHO05D002689 8.9e-09 63.5 80 30.0
Migut.I00642 Erythranthe guttata HOM05D002570 ORTHO05D002689 8.9e-09 63.5 80 35.0
Phvul.004G022100 Phaseolus vulgaris HOM05D002570 ORTHO05D002689 8.9e-09 63.5 89 30.3
Sed0009460 Sechium edule HOM05D002570 ORTHO05D002689 8.9e-09 63.5 79 32.9
Gohir.A05G143000 Gossypium hirsutum HOM05D002570 ORTHO05D002689 1.2e-08 63.2 83 31.3
Gohir.D05G145400 Gossypium hirsutum HOM05D002570 ORTHO05D002689 1.2e-08 63.2 83 31.3
Gorai.009G149300 Gossypium raimondii HOM05D002570 ORTHO05D002689 1.2e-08 63.2 83 31.3
THA.LOC104812588 Tarenaya hassleriana HOM05D002570 ORTHO05D002689 1.2e-08 63.2 71 40.8
TAR383G0799 Trochodendron aralioides HOM05D002570 ORTHO05D002689 1.2e-08 63.2 80 33.8
MD15G1072300 Malus domestica HOM05D002570 ORTHO05D002689 1.5e-08 62.8 87 33.3
Peaxi162Scf00314g00938 Petunia axillaris HOM05D002570 ORTHO05D002689 1.5e-08 62.8 78 32.1
RcHm_v2.0_Chr2g0131671 Rosa chinensis HOM05D002570 ORTHO05D002689 1.5e-08 62.8 80 33.8
Cpa.g.sc21.103 Carica papaya HOM05D002570 ORTHO05D002689 2.0e-08 62.4 84 32.1
FAN05G0139 Fragaria x ananassa HOM05D002570 ORTHO05D002689 2.0e-08 62.4 81 33.3
FAN05G5383 Fragaria x ananassa HOM05D002570 ORTHO05D002689 2.0e-08 62.4 81 33.3
Manes.04G097900 Manihot esculenta HOM05D002570 ORTHO05D002689 2.0e-08 62.4 80 31.2
Glyma.13G371800 Glycine max HOM05D002570 ORTHO05D002689 2.6e-08 62.0 80 35.0
MSTRG.22832 Avicennia marina HOM05D002570 ORTHO05D002689 3.4e-08 61.6 88 33.0
FvH4_6g28000 Fragaria vesca HOM05D002570 ORTHO05D002689 3.4e-08 61.6 81 33.3
FAN02G4288 Fragaria x ananassa HOM05D002570 ORTHO05D002689 3.4e-08 61.6 81 33.3
FAN14G4539 Fragaria x ananassa HOM05D002570 ORTHO05D002689 3.4e-08 61.6 81 33.3
HanXRQChr04g0099961 Helianthus annuus HOM05D002570 ORTHO05D002689 3.4e-08 61.6 81 37.0
Sed0010699 Sechium edule HOM05D002570 ORTHO05D002689 3.4e-08 61.6 80 31.2
arahy.Tifrunner.gnm1.ann1.CN16C1 Arachis hypogaea HOM05D002570 ORTHO05D002689 4.4e-08 61.2 85 30.6
ClCG09G003530 Citrullus lanatus HOM05D002570 ORTHO05D002689 4.4e-08 61.2 80 31.2
PGSC0003DMG400000865 Solanum tuberosum HOM05D002570 ORTHO05D002689 4.4e-08 61.2 86 31.4
FAN09G2432 Fragaria x ananassa HOM05D002570 ORTHO05D002689 5.7e-08 60.8 81 33.3
HanXRQChr02g0033781 Helianthus annuus HOM05D002570 ORTHO05D002689 5.7e-08 60.8 81 34.6
Sabra02G0094200 Salix brachista HOM05D002570 ORTHO05D002689 5.7e-08 60.8 76 32.9
arahy.Tifrunner.gnm1.ann1.NFUI4Q Arachis hypogaea HOM05D002570 ORTHO05D002689 7.5e-08 60.5 78 35.9
MSTRG.11212 Avicennia marina HOM05D002570 ORTHO05D002689 7.5e-08 60.5 70 37.1
Migut.D01154 Erythranthe guttata HOM05D002570 ORTHO05D002689 7.5e-08 60.5 80 32.5
Sc15g0005750 Simmondsia chinensis HOM05D001633 ORTHO05D002880 7.5e-08 60.5 93 33.3
Gohir.A10G049400 Gossypium hirsutum HOM05D002570 ORTHO05D002689 9.8e-08 60.1 81 32.1
Potri.002G119700 Populus trichocarpa HOM05D002570 ORTHO05D002689 9.8e-08 60.1 65 35.4
RcHm_v2.0_Chr6g0309331 Rosa chinensis HOM05D002570 ORTHO05D002689 9.8e-08 60.1 88 35.2
COL.COLO4_28527 Corchorus olitorius HOM05D002570 ORTHO05D002689 1.3e-07 59.7 57 38.6
Duzib192G0671 Durio zibethinus HOM05D002570 ORTHO05D002689 1.3e-07 59.7 81 34.6
Zm00001eb058270 Zea mays HOM05D002570 ORTHO05D002689 1.3e-07 59.7 86 36.0
CiPaw.01G051100 Carya illinoinensis HOM05D002570 ORTHO05D002689 1.7e-07 59.3 80 32.5
Oeu012866.1 Olea europaea HOM05D002570 ORTHO05D002689 1.7e-07 59.3 80 33.8
Prupe.3G106900 Prunus persica HOM05D002570 ORTHO05D002689 1.7e-07 59.3 80 31.2
Migut.C00496 Erythranthe guttata HOM05D002570 ORTHO05D002689 2.2e-07 58.9 53 43.4
MD09G1230400 Malus domestica HOM05D002570 ORTHO05D002689 2.2e-07 58.9 81 33.3
SalBow1G2645 Salvia bowleyana HOM05D002570 ORTHO05D002689 2.2e-07 58.9 69 34.8
THA.LOC104804738 Tarenaya hassleriana HOM05D002570 ORTHO05D002689 2.2e-07 58.9 69 40.6
Sabra03G0137200 Salix brachista HOM05D002570 ORTHO05D002689 3.7e-07 58.2 79 31.6
PGSC0003DMG400021530 Solanum tuberosum HOM05D002570 ORTHO05D002689 3.7e-07 58.2 75 33.3
Potri.003G187500 Populus trichocarpa HOM05D002570 ORTHO05D002689 4.9e-07 57.8 75 32.0
Actinidia18273 Actinidia chinensis HOM05D002570 ORTHO05D002689 8.3e-07 57.0 80 32.5
Medtr2g105430 Medicago truncatula HOM05D002570 ORTHO05D002689 8.3e-07 57.0 80 31.2
Actinidia25496 Actinidia chinensis HOM05D002570 ORTHO05D002689 1.1e-06 56.6 100 28.0
SalBow6G3045 Salvia bowleyana HOM05D002570 ORTHO05D002689 1.1e-06 56.6 65 32.3
SalBow8G2749 Salvia bowleyana HOM05D002570 ORTHO05D002689 1.1e-06 56.6 65 32.3
Hund09510 Selenicereus undatus HOM05D002570 ORTHO05D002689 1.1e-06 56.6 77 36.4
arahy.Tifrunner.gnm1.ann1.Z5UTBB Arachis hypogaea HOM05D002570 ORTHO05D002689 1.4e-06 56.2 80 35.0
CDE07G0252 Ceratophyllum demersum HOM05D002570 ORTHO05D002689 1.4e-06 56.2 77 33.8
ClCG10G012800 Citrullus lanatus HOM05D002570 ORTHO05D002689 1.4e-06 56.2 82 31.7
Lj3g0002113 Lotus japonicus HOM05D002570 ORTHO05D002689 1.4e-06 56.2 56 44.6
unitig_578.g16139 Utricularia gibba HOM05D002570 ORTHO05D002689 1.4e-06 56.2 65 33.8
MD15G1072200 Malus domestica HOM05D003189 ORTHO05D003449 1.8e-06 55.8 70 38.6
Haze_15246 Corylus avellana HOM05D002570 ORTHO05D002689 2.4e-06 55.5 98 30.6
Oeu033446.1 Olea europaea HOM05D002570 ORTHO05D002689 3.1e-06 55.1 70 35.7
Zm00001eb214250 Zea mays HOM05D002570 ORTHO05D002689 3.1e-06 55.1 47 51.1
SGA_v2.0_scaffold74G24622 Striga asiatica HOM05D002570 ORTHO05D002689 4.1e-06 54.7 69 34.8
Sabra01G0026300 Salix brachista HOM05D002570 ORTHO05D002689 5.4e-06 54.3 56 33.9
CsaV3_3G032640 Cucumis sativus L. HOM05D002570 ORTHO05D002689 7.0e-06 53.9 81 32.1
CDE02G3789 Ceratophyllum demersum HOM05D002570 ORTHO05D002689 9.2e-06 53.5 76 30.3
ECA247G0437 Erigeron canadensis HOM05D005398 ORTHO05D000476 9.2e-06 53.5 77 33.8
Lalb_Chr02g0159831 Lupinus albus HOM05D002570 ORTHO05D002689 9.2e-06 53.5 61 36.1
Zm00001eb067680 Zea mays HOM05D002570 ORTHO05D002689 9.2e-06 53.5 81 35.8


User provided reference genes

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