Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy6G02573 Aquilegia oxysepala HOM05D004406 ORTHO05D005660 6.5e-282 973.4 489 100.0
Aqoxy113s002 Aquilegia oxysepala HOM05D004406 ORTHO05D005660 3.5e-243 844.7 421 97.6
Aqoxy6G03019 Aquilegia oxysepala HOM05D004406 ORTHO05D005660 5.0e-242 840.9 486 84.6
TAR376G0792 Trochodendron aralioides HOM05D004406 ORTHO05D005660 2.7e-227 792.0 476 80.3
CSS0020755 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 1.7e-221 772.7 473 78.4
COL.COLO4_35795 Corchorus olitorius HOM05D004406 ORTHO05D005660 4.6e-219 764.6 474 77.2
Gorai.007G217900 Gossypium raimondii HOM05D004406 ORTHO05D005660 6.6e-218 760.8 476 76.7
Thecc.01G135800 Theobroma cacao HOM05D004406 ORTHO05D005660 1.1e-217 760.0 474 76.8
Gohir.D11G203200 Gossypium hirsutum HOM05D004406 ORTHO05D005660 1.9e-217 759.2 476 76.5
Prupe.4G148400 Prunus persica HOM05D004406 ORTHO05D005660 7.3e-217 757.3 472 76.7
Ca_03669_v3 Cicer arietinum L. HOM05D004406 ORTHO05D005660 1.2e-216 756.5 467 76.7
CiPaw.01G106500 Carya illinoinensis HOM05D004406 ORTHO05D005660 2.1e-216 755.7 469 78.7
TAR628G1650 Trochodendron aralioides HOM05D004406 ORTHO05D005660 8.1e-216 753.8 463 78.8
Manes.10G061001 Manihot esculenta HOM05D004406 ORTHO05D005660 1.4e-215 753.1 472 76.7
Dinv26661 Davidia involucrata HOM05D004406 ORTHO05D005660 1.8e-215 752.7 474 76.6
MD05G1209100 Malus domestica HOM05D004406 ORTHO05D005660 4.0e-215 751.5 472 76.3
Eucgr.F01412 Eucalyptus grandis HOM05D004406 ORTHO05D005660 5.2e-215 751.1 475 74.9
Nn5g30617 Nelumbo nucifera HOM05D004406 ORTHO05D005660 6.8e-215 750.7 476 76.5
Lj3g0010925 Lotus japonicus HOM05D004406 ORTHO05D005660 1.2e-214 750.0 479 75.4
Cfa019935 Carpinus fangiana HOM05D004406 ORTHO05D005660 2.0e-214 749.2 474 77.6
Medtr2g069330 Medicago truncatula HOM05D004406 ORTHO05D005660 2.0e-214 749.2 477 74.8
Actinidia18837 Actinidia chinensis HOM05D004406 ORTHO05D005660 2.6e-214 748.8 476 76.5
arahy.Tifrunner.gnm1.ann1.L0EV17 Arachis hypogaea HOM05D004406 ORTHO05D005660 3.4e-214 748.4 476 75.4
Gohir.A11G220400 Gossypium hirsutum HOM05D004406 ORTHO05D005660 5.8e-214 747.7 476 75.4
GSVIVG01009332001 Vitis vinifera HOM05D004406 ORTHO05D005660 1.3e-213 746.5 479 74.5
Psat1g012120 Pisum sativum HOM05D004406 ORTHO05D005660 2.9e-213 745.3 471 75.2
TWI38G2065 Tripterygium wilfordii HOM05D004406 ORTHO05D005660 3.8e-213 745.0 474 74.9
VMungo1080G1685 Vigna mungo HOM05D004406 ORTHO05D005660 8.4e-213 743.8 476 75.2
Lalb_Chr25g0284911 Lupinus albus HOM05D004406 ORTHO05D005660 1.4e-212 743.0 476 74.8
Phvul.005G057900 Phaseolus vulgaris HOM05D004406 ORTHO05D005660 3.2e-212 741.9 476 75.6
Potri.001G394300 Populus trichocarpa HOM05D004406 ORTHO05D005660 9.3e-212 740.3 474 75.9
Glyma.15G256700 Glycine max HOM05D004406 ORTHO05D005660 3.5e-211 738.4 472 75.0
Lj1C808G13 Lonicera japonica HOM05D004406 ORTHO05D005660 7.8e-211 737.3 471 74.7
FvH4_3g16570 Fragaria vesca HOM05D004406 ORTHO05D005660 1.7e-210 736.1 476 74.2
RcHm_v2.0_Chr5g0027601 Rosa chinensis HOM05D004406 ORTHO05D005660 6.6e-210 734.2 476 74.8
CANSAT25G0941 Cannabis sativa HOM05D004406 ORTHO05D005660 1.1e-209 733.4 473 74.6
Sc03g0007790 Simmondsia chinensis HOM05D004406 ORTHO05D005660 1.5e-209 733.0 474 74.9
FAN21G0297 Fragaria x ananassa HOM05D004406 ORTHO05D005660 3.3e-209 731.9 465 74.8
FAN11G0596 Fragaria x ananassa HOM05D004406 ORTHO05D005660 9.6e-209 730.3 471 74.1
Hund02309 Selenicereus undatus HOM05D004406 ORTHO05D005660 1.3e-208 729.9 469 74.2
FAN25G0744 Fragaria x ananassa HOM05D004406 ORTHO05D005660 1.6e-208 729.6 471 74.3
EL10Ac9g22869 Beta vulgaris HOM05D004406 ORTHO05D005660 2.4e-207 725.7 469 74.0
PSO528G0243 Papaver somniferum HOM05D004406 ORTHO05D005660 4.0e-207 724.9 471 75.6
MD10G1195500 Malus domestica HOM05D004406 ORTHO05D005660 6.9e-207 724.2 454 76.4
PSO170G0587 Papaver somniferum HOM05D004406 ORTHO05D005660 4.4e-206 721.5 471 75.4
Peaxi162Scf00003g04835 Petunia axillaris HOM05D004406 ORTHO05D005660 1.3e-205 719.9 467 73.4
Ciclev10001005m.g Citrus clementina HOM05D004406 ORTHO05D005660 4.9e-205 718.0 478 74.3
Atru.chr9.1518 Acer truncatum HOM05D004406 ORTHO05D005660 1.4e-204 716.5 469 75.5
Cpa.g.sc132.61 Carica papaya HOM05D004406 ORTHO05D005660 1.9e-204 716.1 471 73.7
MSTRG.6706 Avicennia marina HOM05D004406 ORTHO05D005660 2.4e-204 715.7 474 71.5
HanXRQChr11g0329941 Helianthus annuus HOM05D004406 ORTHO05D005660 4.2e-204 714.9 470 73.6
PGSC0003DMG400008359 Solanum tuberosum HOM05D004406 ORTHO05D005660 4.2e-204 714.9 466 73.2
Cc05_g10180 Coffea canephora HOM05D004406 ORTHO05D005660 9.3e-204 713.8 474 71.9
Solyc10g078480.2 Solanum lycopersicum HOM05D004406 ORTHO05D005660 1.2e-203 713.4 466 73.0
Sopen10g029140 Solanum pennellii HOM05D004406 ORTHO05D005660 1.6e-203 713.0 466 73.0
ECA236G4460 Erigeron canadensis HOM05D004406 ORTHO05D005660 1.0e-202 710.3 475 72.4
Migut.M00660 Erythranthe guttata HOM05D004406 ORTHO05D005660 1.7e-202 709.5 475 72.0
arahy.Tifrunner.gnm1.ann1.BTSV3Q Arachis hypogaea HOM05D004406 ORTHO05D005660 3.3e-201 705.3 476 72.7
Sed0020103 Sechium edule HOM05D004406 ORTHO05D005660 4.3e-201 704.9 478 71.5
Oeu002771.1 Olea europaea HOM05D004406 ORTHO05D005660 2.4e-199 699.1 457 73.5
vmacro15158 Vaccinium macrocarpon HOM05D004406 ORTHO05D005660 5.3e-199 698.0 449 73.5
ATR0739G109 Amborella trichopoda HOM05D004406 ORTHO05D005660 6.9e-199 697.6 474 71.7
CAN.G960.55 Capsicum annuum HOM05D004406 ORTHO05D005660 6.9e-199 697.6 473 71.7
PGR004G1399 Punica granatum HOM05D004406 ORTHO05D005660 6.9e-199 697.6 473 72.5
QL04p076605 Quercus lobata HOM05D004406 ORTHO05D005660 8.4e-197 690.6 424 77.8
vmacro12019 Vaccinium macrocarpon HOM05D004406 ORTHO05D005660 2.4e-196 689.1 444 73.4
Dinv13306 Davidia involucrata HOM05D004406 ORTHO05D005660 1.6e-195 686.4 435 76.3
Nitab4.5_0006279g0030 Nicotiana tabacum HOM05D004406 ORTHO05D005660 2.3e-194 682.6 470 70.9
CDE06G1959 Ceratophyllum demersum HOM05D004406 ORTHO05D005660 1.5e-193 679.9 498 67.5
MELO3C022781.2 Cucumis melo HOM05D004406 ORTHO05D005660 3.3e-193 678.7 481 69.2
Oeu044427.1 Olea europaea HOM05D004406 ORTHO05D005660 3.3e-193 678.7 546 62.1
CsaV3_5G023450 Cucumis sativus L. HOM05D004406 ORTHO05D005660 5.6e-193 677.9 480 69.2
Haze_15516 Corylus avellana HOM05D004406 ORTHO05D005660 1.6e-192 676.4 470 72.3
unitig_62.g23080 Utricularia gibba HOM05D004406 ORTHO05D005660 4.0e-191 671.8 473 67.9
ClCG03G009170 Citrullus lanatus HOM05D004406 ORTHO05D005660 1.0e-189 667.2 478 68.8
AUR62017618 Chenopodium quinoa HOM05D004406 ORTHO05D005660 1.3e-189 666.8 426 73.9
Duzib187G2008 Durio zibethinus HOM05D004406 ORTHO05D005660 3.8e-189 665.2 473 70.4
SEGI_06613 Sequoiadendron giganteum HOM05D004406 ORTHO05D005660 1.1e-188 663.7 517 64.0
Aa31LG7G1110 Aethionema arabicum HOM05D004406 ORTHO05D005660 1.6e-187 659.8 480 69.0
AL1G28740 Arabidopsis lyrata HOM05D004406 ORTHO05D005660 1.6e-187 659.8 473 68.9
BolC5t30202H Brassica oleracea HOM05D004406 ORTHO05D005660 1.6e-187 659.8 472 69.3
C05p14870 Brassica napus HOM05D004406 ORTHO05D005660 2.7e-187 659.1 472 69.3
CARHR017050 Cardamine hirsuta HOM05D004406 ORTHO05D005660 2.7e-187 659.1 475 69.1
Sp1g14730 Schrenkiella parvula HOM05D004406 ORTHO05D005660 7.9e-187 657.5 474 69.0
SGA_v2.0_scaffold73G24357 Striga asiatica HOM05D004406 ORTHO05D005660 1.0e-186 657.1 480 66.7
Zm00001eb401770 Zea mays HOM05D004406 ORTHO05D005660 2.3e-186 656.0 472 68.0
A06p12560 Brassica napus HOM05D004406 ORTHO05D005660 5.1e-186 654.8 472 69.3
Os03g0180700 Oryza sativa ssp. japonica HOM05D004406 ORTHO05D005660 5.1e-186 654.8 469 69.1
Thhalv10007520m.g Eutrema salsugineum HOM05D004406 ORTHO05D005660 8.7e-186 654.1 474 68.4
FAN16G0888 Fragaria x ananassa HOM05D004406 ORTHO05D005660 1.5e-185 653.3 467 69.4
AT1G16570 Arabidopsis thaliana HOM05D004406 ORTHO05D005660 1.3e-184 650.2 473 67.9
Carub.0001s1633 Capsella rubella HOM05D004406 ORTHO05D005660 1.3e-184 650.2 473 68.3
BraA06t24419Z Brassica rapa HOM05D004406 ORTHO05D005660 2.8e-184 649.0 472 68.6
THA.LOC104808122 Tarenaya hassleriana HOM05D004406 ORTHO05D005660 4.8e-184 648.3 474 68.4
Gohir.A09G004700 Gossypium hirsutum HOM05D004406 ORTHO05D005660 3.1e-183 645.6 474 68.8
Nitab4.5_0000812g0150 Nicotiana tabacum HOM05D004406 ORTHO05D005660 4.1e-183 645.2 472 66.9
A09p60830 Brassica napus HOM05D004406 ORTHO05D005660 1.2e-182 643.7 473 68.3
C08p44420 Brassica napus HOM05D004406 ORTHO05D005660 1.2e-182 643.7 473 68.3
BraA09t41456Z Brassica rapa HOM05D004406 ORTHO05D005660 1.2e-182 643.7 473 68.3
HPP92_025666 Vanilla planifolia HOM05D004406 ORTHO05D005660 1.2e-182 643.7 475 66.3
BolC8t51983H Brassica oleracea HOM05D004406 ORTHO05D005660 2.9e-181 639.0 473 67.9
DCAR_013800 Daucus carota HOM05D004406 ORTHO05D005660 3.9e-178 628.6 479 66.6
Glyma.08G170200 Glycine max HOM05D004406 ORTHO05D005660 1.6e-176 623.2 415 72.5
SalBow5G0012 Salvia bowleyana HOM05D004406 ORTHO05D005660 2.4e-175 619.4 526 61.0
TPR.G9754 Trifolium pratense HOM05D004406 ORTHO05D005660 2.0e-174 616.3 367 79.3
BcaC05g25520 Brassica carinata HOM05D004406 ORTHO05D005660 3.4e-174 615.5 444 68.0
CDE04G2964 Ceratophyllum demersum HOM05D004406 ORTHO05D005660 1.0e-170 604.0 479 63.0
Rhsim06G0184400 Rhododendron simsii HOM05D004406 ORTHO05D005660 1.1e-164 583.9 474 65.0
Lsat_1_v5_gn_7_99701 Lactuca sativa HOM05D004406 ORTHO05D005660 3.0e-162 575.9 468 63.5
Mapoly0116s0013 Marchantia polymorpha HOM05D004406 ORTHO05D005660 3.9e-162 575.5 515 56.5
FAN21G3885 Fragaria x ananassa HOM05D004406 ORTHO05D005660 2.2e-160 569.7 350 77.4
SalBow5G1666 Salvia bowleyana HOM05D004406 ORTHO05D005660 4.8e-160 568.5 408 67.2
Gohir.A11G222401 Gossypium hirsutum HOM05D004406 ORTHO05D005660 1.9e-156 556.6 363 74.4
Pp3c22_7820 Physcomitrium patens HOM05D004406 ORTHO05D005660 9.4e-156 554.3 489 59.1
AL6G51100 Arabidopsis lyrata HOM05D004406 ORTHO05D005660 3.6e-155 552.4 469 62.0
SMO353G0172 Selaginella moellendorffii HOM05D004406 ORTHO05D005660 3.2e-148 529.3 476 58.0
Actinidia35181 Actinidia chinensis HOM05D004406 ORTHO05D005660 4.4e-145 518.8 476 57.1
AagrBONN_evm.TU.Sc2ySwM_362.1435 Anthoceros agrestis HOM05D004406 ORTHO05D005660 6.5e-141 505.0 474 54.6
CBR_g37525 Chara braunii HOM05D004406 ORTHO05D005660 1.6e-131 473.8 552 45.8
Gorai.006G005600 Gossypium raimondii HOM05D004406 ORTHO05D005660 2.8e-123 446.4 474 51.5
PSO017G0585 Papaver somniferum HOM05D004406 ORTHO05D005660 3.6e-115 419.5 305 67.2
Gorai.007G217600 Gossypium raimondii HOM05D004406 ORTHO05D005660 4.7e-115 419.1 329 67.5
Sabra16G0258600 Salix brachista HOM05D004406 ORTHO05D005660 1.6e-110 404.1 270 70.0
Rhsim08G0107400 Rhododendron simsii HOM05D004406 ORTHO05D005660 1.8e-106 390.6 233 80.7
Gohir.D11G203050 Gossypium hirsutum HOM05D004406 ORTHO05D005660 4.3e-92 342.8 285 65.6
MCO08G055 Micromonas commoda HOM05D004406 ORTHO05D005660 5.3e-90 335.9 479 42.6
SEGI_11739 Sequoiadendron giganteum HOM05D004406 ORTHO05D005660 1.1e-87 328.2 203 76.4
Cre12.g516550 Chlamydomonas reinhardtii HOM05D004406 ORTHO05D005660 4.0e-82 309.7 377 43.5
SHI18054 Sapria himalayana HOM05D004406 ORTHO05D005660 5.6e-76 289.3 273 55.3
Haze_26719 Corylus avellana HOM05D004406 ORTHO05D005660 6.2e-75 285.8 484 36.2
CSS0001722 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 3.4e-73 280.0 248 60.5
SEGI_33737 Sequoiadendron giganteum HOM05D004406 ORTHO05D005660 3.0e-69 266.9 272 51.1
Cfa025278 Carpinus fangiana HOM05D004406 ORTHO05D005660 6.7e-69 265.8 467 38.5
PRCOL_00002569 Prasinoderma coloniale HOM05D004406 ORTHO05D005660 1.9e-68 264.2 505 35.2
SGA_v2.0_scaffold181G39778 Striga asiatica HOM05D004406 ORTHO05D005660 2.5e-63 247.3 458 36.2
FAN04G0447 Fragaria x ananassa HOM05D004406 ORTHO05D005660 3.2e-55 220.3 174 64.4
AL6G51070 Arabidopsis lyrata HOM05D004406 ORTHO05D005660 4.6e-54 216.5 181 60.8
Zm00001eb421280 Zea mays HOM05D004406 ORTHO05D005660 2.3e-53 214.2 209 54.1
Actinidia18838 Actinidia chinensis HOM05D004406 ORTHO05D005660 5.7e-52 209.5 296 43.6
Zm00001eb023770 Zea mays HOM05D003078 ORTHO05D003545 2.2e-51 207.6 198 54.5
CSS0016238 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 2.4e-50 204.1 107 85.0
CSS0034423 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 2.6e-49 200.7 107 83.2
CSS0034904 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 1.0e-48 198.7 107 82.2
SHI18055 Sapria himalayana HOM05D004406 ORTHO05D005660 1.4e-45 188.3 202 52.5
Os06g0564800 Oryza sativa ssp. japonica HOM05D004406 ORTHO05D005660 7.7e-41 172.6 107 76.6
CSS0028761 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 2.2e-40 171.0 107 73.8
Zm00001eb180660 Zea mays HOM05D004406 ORTHO05D000467 1.0e-37 162.2 124 62.9
Actinidia18840 Actinidia chinensis HOM05D004406 ORTHO05D005660 1.1e-34 152.1 314 32.8
Zm00001eb005970 Zea mays HOM05D004406 ORTHO05D005660 1.1e-34 152.1 122 61.5
TPR.G22508 Trifolium pratense HOM05D004406 ORTHO05D005660 1.6e-33 148.3 113 62.8
Zm00001eb049380 Zea mays HOM05D004406 ORTHO05D005660 2.0e-33 147.9 104 68.3
Zm00001eb307610 Zea mays HOM05D004406 ORTHO05D005660 1.9e-31 141.4 91 69.2
Actinidia18841 Actinidia chinensis HOM05D004406 ORTHO05D005660 7.5e-28 129.4 67 92.5
Haze_08535 Corylus avellana HOM05D004406 ORTHO05D005660 5.0e-24 116.7 125 56.0
Lj3g0015683 Lotus japonicus HOM05D004406 ORTHO05D036510 2.6e-20 104.4 68 73.5
Hma1.2p1_0035F.1_g022190 Hydrangea macrophylla HOM05D004406 ORTHO05D005660 1.9e-15 88.2 58 72.4
C02p50710 Brassica napus HOM05D004406 ORTHO05D005660 4.4e-12 77.0 80 53.8
SEGI_01378 Sequoiadendron giganteum HOM05D000678 ORTHO05D001709 2.0e-09 68.2 55 63.6
vmacro12020 Vaccinium macrocarpon HOM05D004406 ORTHO05D036510 1.6e-06 58.5 41 70.7
vmacro15157 Vaccinium macrocarpon HOM05D004406 ORTHO05D036510 3.6e-06 57.4 41 68.3


User provided reference genes

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