Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy6G02471 Aquilegia oxysepala HOM05D007433 ORTHO05D009199 2.6e-59 231.9 117 100.0
Dinv44935 Davidia involucrata HOM05D007433 ORTHO05D009199 1.2e-35 153.3 114 70.2
TAR628G1336 Trochodendron aralioides HOM05D007433 ORTHO05D009199 1.8e-33 146.0 111 67.6
Hma1.2p1_1170F.1_g263410 Hydrangea macrophylla HOM05D007433 ORTHO05D009199 2.4e-33 145.6 107 70.1
GSVIVG01009308001 Vitis vinifera HOM05D007433 ORTHO05D009199 1.2e-32 143.3 110 67.3
Actinidia29630 Actinidia chinensis HOM05D001492 ORTHO05D001400 2.9e-31 138.7 107 65.4
Thecc.08G085300 Theobroma cacao HOM05D007433 ORTHO05D009199 2.9e-31 138.7 109 67.0
vmacro04593 Vaccinium macrocarpon HOM05D007433 ORTHO05D009199 6.6e-31 137.5 110 65.5
Cfa013749 Carpinus fangiana HOM05D007433 ORTHO05D009199 1.1e-30 136.7 108 67.6
Actinidia19585 Actinidia chinensis HOM05D002375 ORTHO05D002457 1.9e-30 136.0 103 64.1
TAR376G0199 Trochodendron aralioides HOM05D007433 ORTHO05D009199 1.9e-30 136.0 104 67.3
Haze_06413 Corylus avellana HOM05D007433 ORTHO05D009199 2.5e-30 135.6 108 67.6
Rhsim07G0217700 Rhododendron simsii HOM05D007433 ORTHO05D009199 2.5e-30 135.6 116 64.7
Potri.002G116200 Populus trichocarpa HOM05D007433 ORTHO05D009199 1.2e-29 133.3 114 64.0
TAR381G0154 Trochodendron aralioides HOM05D007433 ORTHO05D009199 1.6e-29 132.9 118 61.9
Potri.014G013600 Populus trichocarpa HOM05D007433 ORTHO05D009199 8.0e-29 130.6 114 64.9
CiPaw.07G172700 Carya illinoinensis HOM05D007433 ORTHO05D009199 1.0e-28 130.2 110 64.5
Nn5g30654 Nelumbo nucifera HOM05D007433 ORTHO05D009199 1.8e-28 129.4 100 66.0
QL12p038428 Quercus lobata HOM05D007433 ORTHO05D009199 2.3e-28 129.0 115 61.7
CiPaw.08G051700 Carya illinoinensis HOM05D007433 ORTHO05D009199 5.2e-28 127.9 110 64.5
Dinv39208 Davidia involucrata HOM05D007433 ORTHO05D009199 1.5e-27 126.3 90 74.4
MBI16_g32085_MAGBIO Magnolia biondii HOM05D007433 ORTHO05D009199 5.8e-27 124.4 118 61.9
Peaxi162Scf00340g00061 Petunia axillaris HOM05D007433 ORTHO05D009199 2.2e-26 122.5 112 64.3
Manes.05G183000 Manihot esculenta HOM05D007433 ORTHO05D009199 2.9e-26 122.1 111 59.5
HanXRQChr10g0295351 Helianthus annuus HOM05D007433 ORTHO05D009199 1.9e-25 119.4 114 62.3
Sed0005155 Sechium edule HOM05D007433 ORTHO05D009199 1.9e-25 119.4 108 59.3
TPR.G33670 Trifolium pratense HOM05D007433 ORTHO05D009199 4.1e-25 118.2 116 60.3
COL.COLO4_28471 Corchorus olitorius HOM05D007433 ORTHO05D009199 9.2e-25 117.1 110 60.9
Prupe.1G419900 Prunus persica HOM05D007433 ORTHO05D009199 9.2e-25 117.1 108 65.7
ClCG05G026590 Citrullus lanatus HOM05D007433 ORTHO05D009199 1.2e-24 116.7 102 59.8
MELO3C016834.2 Cucumis melo HOM05D007433 ORTHO05D009199 1.6e-24 116.3 102 60.8
Phvul.009G073600 Phaseolus vulgaris HOM05D007433 ORTHO05D009199 1.6e-24 116.3 107 60.7
Sabra02G0091500 Salix brachista HOM05D007433 ORTHO05D009199 1.6e-24 116.3 89 69.7
VMungo1309G0469 Vigna mungo HOM05D007433 ORTHO05D009199 2.0e-24 115.9 107 60.7
Atru.chr13.862 Acer truncatum HOM05D007433 ORTHO05D009199 2.7e-24 115.5 115 60.0
Manes.18G048800 Manihot esculenta HOM05D007433 ORTHO05D009199 4.6e-24 114.8 113 57.5
Eucgr.F00094 Eucalyptus grandis HOM05D007433 ORTHO05D009199 1.0e-23 113.6 94 66.0
Lalb_Chr11g0062981 Lupinus albus HOM05D007433 ORTHO05D009199 1.0e-23 113.6 116 60.3
Glyma.06G048300 Glycine max HOM05D007433 ORTHO05D009199 1.7e-23 112.8 116 56.0
ECA247G0789 Erigeron canadensis HOM05D007433 ORTHO05D009199 8.6e-23 110.5 112 60.7
MD15G1066100 Malus domestica HOM05D007433 ORTHO05D009199 8.6e-23 110.5 109 59.6
Cc10_g07560 Coffea canephora HOM05D007433 ORTHO05D009199 1.1e-22 110.2 110 57.3
Solyc04g077570.1 Solanum lycopersicum HOM05D007433 ORTHO05D009199 1.5e-22 109.8 109 56.9
FvH4_2g32740 Fragaria vesca HOM05D007433 ORTHO05D009199 1.9e-22 109.4 111 63.1
FAN24G3110 Fragaria x ananassa HOM05D007433 ORTHO05D009199 1.9e-22 109.4 111 63.1
Gorai.009G221600 Gossypium raimondii HOM05D007433 ORTHO05D009199 1.9e-22 109.4 97 59.8
Lj1g0004253 Lotus japonicus HOM05D007433 ORTHO05D009199 2.5e-22 109.0 117 59.8
RcHm_v2.0_Chr6g0309931 Rosa chinensis HOM05D007433 ORTHO05D009199 2.5e-22 109.0 109 60.6
Sopen04g031210 Solanum pennellii HOM05D007433 ORTHO05D009199 2.5e-22 109.0 111 57.7
FAN15G2820 Fragaria x ananassa HOM05D007433 ORTHO05D009199 3.3e-22 108.6 110 64.5
Glyma.04G047400 Glycine max HOM05D007433 ORTHO05D009199 4.3e-22 108.2 105 56.2
Gohir.D05G214900 Gossypium hirsutum HOM05D007433 ORTHO05D009199 4.3e-22 108.2 97 58.8
CANSAT25G0221 Cannabis sativa HOM05D007433 ORTHO05D009199 7.3e-22 107.5 104 60.6
Gohir.A05G211600 Gossypium hirsutum HOM05D007433 ORTHO05D009199 7.3e-22 107.5 97 58.8
PGSC0003DMG400004914 Solanum tuberosum HOM05D007433 ORTHO05D009199 1.2e-21 106.7 110 57.3
Lalb_Chr08g0245211 Lupinus albus HOM05D007433 ORTHO05D009199 2.1e-21 105.9 109 62.4
Nitab4.5_0013161g0010 Nicotiana tabacum HOM05D007433 ORTHO05D009199 2.8e-21 105.5 104 58.7
FAN27G2289 Fragaria x ananassa HOM05D007433 ORTHO05D009199 3.6e-21 105.1 110 62.7
FAN20G2053 Fragaria x ananassa HOM05D007433 ORTHO05D009199 6.2e-21 104.4 109 62.4
Nn6g34518 Nelumbo nucifera HOM05D007433 ORTHO05D009199 8.0e-21 104.0 89 64.0
Gohir.A02G080400 Gossypium hirsutum HOM05D007433 ORTHO05D009199 2.3e-20 102.4 104 56.7
Gohir.D02G088300 Gossypium hirsutum HOM05D007433 ORTHO05D009199 2.3e-20 102.4 104 56.7
Gorai.005G098900 Gossypium raimondii HOM05D007433 ORTHO05D009199 2.3e-20 102.4 104 56.7
Oeu014281.1 Olea europaea HOM05D007433 ORTHO05D009199 2.3e-20 102.4 101 60.4
Gohir.D06G022200 Gossypium hirsutum HOM05D007433 ORTHO05D009199 3.1e-20 102.1 110 52.7
Medtr3g103330 Medicago truncatula HOM05D007433 ORTHO05D009199 4.0e-20 101.7 105 58.1
AUR62035005 Chenopodium quinoa HOM05D007433 ORTHO05D009199 5.2e-20 101.3 92 55.4
Gorai.010G026800 Gossypium raimondii HOM05D007433 ORTHO05D009199 5.2e-20 101.3 111 54.1
Psat5g037160 Pisum sativum HOM05D007433 ORTHO05D009199 5.2e-20 101.3 118 54.2
Gohir.A06G025100 Gossypium hirsutum HOM05D007433 ORTHO05D009199 1.5e-19 99.8 104 52.9
Sc02g0008080 Simmondsia chinensis HOM05D007433 ORTHO05D009199 1.5e-19 99.8 113 51.3
Lsat_1_v5_gn_1_480 Lactuca sativa HOM05D007433 ORTHO05D009199 2.6e-19 99.0 107 57.9
CAN.G1239.9 Capsicum annuum HOM05D007433 ORTHO05D009199 3.4e-19 98.6 106 51.9
Cpa.g.sc142.56 Carica papaya HOM05D007433 ORTHO05D009199 4.4e-19 98.2 115 53.0
CsaV3_4G035230 Cucumis sativus L. HOM05D007433 ORTHO05D009199 4.4e-19 98.2 72 69.4
Ciclev10002882m.g Citrus clementina HOM05D007433 ORTHO05D009199 6.4e-18 94.4 108 52.8
EL10Ac1g02355 Beta vulgaris HOM05D007433 ORTHO05D009199 1.2e-16 90.1 118 44.9
Migut.C00395 Erythranthe guttata HOM05D007433 ORTHO05D009199 1.1e-14 83.6 83 56.6
Glyma.17G233300 Glycine max HOM05D007433 ORTHO05D009199 1.5e-14 83.2 107 53.3
Phvul.001G029300 Phaseolus vulgaris HOM05D007433 ORTHO05D009199 2.5e-14 82.4 106 52.8
SalBow7G1382 Salvia bowleyana HOM05D007433 ORTHO05D009199 3.3e-14 82.0 81 55.6
VMungo0647G2383 Vigna mungo HOM05D007433 ORTHO05D009199 3.3e-14 82.0 107 50.5
Phvul.011G135200 Phaseolus vulgaris HOM05D007433 ORTHO05D009199 4.7e-13 78.2 92 52.2
DCAR_008860 Daucus carota HOM05D007433 ORTHO05D009199 4.0e-12 75.1 86 51.2
Atru.chr13.863 Acer truncatum HOM05D007433 ORTHO05D009199 1.5e-11 73.2 88 50.0
Hma1.2p1_3243F.1_g334320 Hydrangea macrophylla HOM05D007433 ORTHO05D009199 1.5e-11 73.2 116 44.0
Potri.014G007000 Populus trichocarpa HOM05D007433 ORTHO05D009199 2.0e-11 72.8 96 46.9
Manes.13G109500 Manihot esculenta HOM05D007433 ORTHO05D009199 7.5e-11 70.9 61 62.3
Ca_15891_v3 Cicer arietinum L. HOM05D007433 ORTHO05D009199 9.9e-11 70.5 112 47.3
SalBow3G4039 Salvia bowleyana HOM05D007433 ORTHO05D009199 2.9e-10 68.9 52 65.4
COL.COLO4_11609 Corchorus olitorius HOM05D007433 ORTHO05D009199 1.1e-09 67.0 77 51.9
Dinv26956 Davidia involucrata HOM05D000754 ORTHO05D000169 1.9e-09 66.2 96 42.7
Thecc.01G075800 Theobroma cacao HOM05D007433 ORTHO05D009199 2.4e-09 65.9 70 45.7
Duzib264G0228 Durio zibethinus HOM05D007433 ORTHO05D000169 3.2e-09 65.5 80 47.5
Gohir.A02G150000 Gossypium hirsutum HOM05D007433 ORTHO05D009199 7.1e-09 64.3 84 45.2
Gorai.003G032000 Gossypium raimondii HOM05D007433 ORTHO05D009199 7.1e-09 64.3 68 50.0
Prupe.6G217400 Prunus persica HOM05D020383 ORTHO05D022607 9.2e-09 63.9 61 50.8
Atru.chr3.1055 Acer truncatum HOM05D007433 ORTHO05D009199 2.1e-08 62.8 57 61.4
Gohir.D03G030400 Gossypium hirsutum HOM05D007433 ORTHO05D009199 2.1e-08 62.8 59 55.9
ATR0797G001 Amborella trichopoda HOM05D007433 ORTHO05D003347 2.7e-08 62.4 69 52.2
QL06p038982 Quercus lobata HOM05D007433 ORTHO05D009199 3.5e-08 62.0 74 47.3
HPP92_025720 Vanilla planifolia HOM05D003086 ORTHO05D003347 4.6e-08 61.6 49 59.2
Sed0023695 Sechium edule HOM05D003086 ORTHO05D003347 6.0e-08 61.2 47 61.7
TPR.G20234 Trifolium pratense HOM05D003086 ORTHO05D003347 1.0e-07 60.5 70 50.0
HPP92_014802 Vanilla planifolia HOM05D003086 ORTHO05D003347 1.3e-07 60.1 56 53.6
Cfa003782 Carpinus fangiana HOM05D003086 ORTHO05D003347 1.7e-07 59.7 46 58.7
Migut.B01892 Erythranthe guttata HOM05D003086 ORTHO05D003347 1.7e-07 59.7 48 60.4
Lsat_1_v5_gn_4_30961 Lactuca sativa HOM05D003086 ORTHO05D003347 1.7e-07 59.7 54 57.4
Medtr8g027380 Medicago truncatula HOM05D003086 ORTHO05D003347 2.3e-07 59.3 52 59.6
Oeu010701.1 Olea europaea HOM05D003086 ORTHO05D003347 3.0e-07 58.9 50 52.0
QL08p045815 Quercus lobata HOM05D003086 ORTHO05D003347 3.0e-07 58.9 57 56.1
Ca_23518_v3 Cicer arietinum L. HOM05D003086 ORTHO05D003347 3.9e-07 58.5 46 60.9
Peaxi162Scf00618g00332 Petunia axillaris HOM05D003086 ORTHO05D003347 5.1e-07 58.2 54 46.3
PGR142G1468 Punica granatum HOM05D003086 ORTHO05D003347 5.1e-07 58.2 49 61.2
Atru.chr5.701 Acer truncatum HOM05D003086 ORTHO05D003347 6.6e-07 57.8 48 58.3
Actinidia20253 Actinidia chinensis HOM05D003086 ORTHO05D003347 6.6e-07 57.8 47 57.4
ClCG01G000300 Citrullus lanatus HOM05D003086 ORTHO05D003347 6.6e-07 57.8 47 55.3
Hma1.2p1_0424F.1_g150510 Hydrangea macrophylla HOM05D016189 ORTHO05D009199 6.6e-07 57.8 78 47.4
Psat4g162600 Pisum sativum HOM05D003086 ORTHO05D003347 6.6e-07 57.8 47 59.6
Ciclev10022804m.g Citrus clementina HOM05D003086 ORTHO05D003347 8.6e-07 57.4 48 58.3
Haze_15678 Corylus avellana HOM05D003086 ORTHO05D003347 8.6e-07 57.4 48 58.3
DCAR_022130 Daucus carota HOM05D003086 ORTHO05D003347 8.6e-07 57.4 46 60.9
FvH4_1g18141 Fragaria vesca HOM05D020383 ORTHO05D022607 8.6e-07 57.4 57 43.9
HanXRQChr04g0120471 Helianthus annuus HOM05D003086 ORTHO05D003347 8.6e-07 57.4 50 56.0
Cpa.g.sc1802.1 Carica papaya HOM05D003086 ORTHO05D003347 1.5e-06 56.6 46 58.7
Migut.N01532 Erythranthe guttata HOM05D003086 ORTHO05D003347 1.5e-06 56.6 36 63.9
Eucgr.H02327 Eucalyptus grandis HOM05D007433 ORTHO05D009199 1.5e-06 56.6 66 42.4
Os03g0675500 Oryza sativa ssp. japonica HOM05D007433 ORTHO05D003347 1.5e-06 56.6 69 42.0
Zm00001eb217410 Zea mays HOM05D007433 ORTHO05D009199 1.5e-06 56.6 96 41.7
AL6G44860 Arabidopsis lyrata HOM05D003086 ORTHO05D003347 1.9e-06 56.2 56 44.6
CSS0006972 Camellia sinensis var. sinensis HOM05D003086 ORTHO05D003347 1.9e-06 56.2 54 51.9
CARHR255790 Cardamine hirsuta HOM05D003086 ORTHO05D003347 1.9e-06 56.2 56 44.6
Hma1.2p1_0591F.1_g185160 Hydrangea macrophylla HOM05D003086 ORTHO05D003347 1.9e-06 56.2 54 50.0
Nitab4.5_0001072g0010 Nicotiana tabacum HOM05D016189 ORTHO05D009199 1.9e-06 56.2 60 46.7
Oeu027320.1 Olea europaea HOM05D003086 ORTHO05D003347 1.9e-06 56.2 71 45.1
MELO3C005905.2 Cucumis melo HOM05D003086 ORTHO05D003347 2.5e-06 55.8 47 53.2
CsaV3_5G000270 Cucumis sativus L. HOM05D003086 ORTHO05D003347 2.5e-06 55.8 47 53.2
Lsat_1_v5_gn_7_740 Lactuca sativa HOM05D003086 ORTHO05D003347 2.5e-06 55.8 53 52.8
MBI17_g21048_MAGBIO Magnolia biondii HOM05D003086 ORTHO05D003347 2.5e-06 55.8 39 61.5
TAR375G0287 Trochodendron aralioides HOM05D003086 ORTHO05D003347 2.5e-06 55.8 48 56.2
Actinidia07974 Actinidia chinensis HOM05D003086 ORTHO05D003347 3.3e-06 55.5 46 56.5
Glyma.07G054300 Glycine max HOM05D003086 ORTHO05D003347 3.3e-06 55.5 72 44.4
HanXRQChr16g0524361 Helianthus annuus HOM05D003086 ORTHO05D003347 3.3e-06 55.5 67 46.3
Peaxi162Scf00548g00006 Petunia axillaris HOM05D016189 ORTHO05D009199 3.3e-06 55.5 56 48.2
RcHm_v2.0_Chr2g0108601 Rosa chinensis HOM05D020383 ORTHO05D022607 3.3e-06 55.5 55 45.5
Solyc06g052060.3 Solanum lycopersicum HOM05D003086 ORTHO05D003347 3.3e-06 55.5 53 43.4
Sopen06g018110 Solanum pennellii HOM05D003086 ORTHO05D003347 3.3e-06 55.5 53 43.4
PGSC0003DMG400019607 Solanum tuberosum HOM05D003086 ORTHO05D003347 3.3e-06 55.5 53 43.4
Thecc.01G339800 Theobroma cacao HOM05D003086 ORTHO05D003347 3.3e-06 55.5 52 50.0
Potri.002G173700 Populus trichocarpa HOM05D003086 ORTHO05D003347 4.3e-06 55.1 48 56.2
Prupe.2G314400 Prunus persica HOM05D003086 ORTHO05D003347 4.3e-06 55.1 48 56.2
Sabra02G0139700 Salix brachista HOM05D003086 ORTHO05D003347 4.3e-06 55.1 55 50.9
AT4G10810 Arabidopsis thaliana HOM05D003086 ORTHO05D003347 5.6e-06 54.7 56 42.9
CAN.G874.33 Capsicum annuum HOM05D003086 ORTHO05D003347 5.6e-06 54.7 63 42.9
CiPaw.05G227500 Carya illinoinensis HOM05D003086 ORTHO05D003347 5.6e-06 54.7 46 56.5
Gohir.A12G248300 Gossypium hirsutum HOM05D003086 ORTHO05D003347 5.6e-06 54.7 51 54.9
Nn3g18930 Nelumbo nucifera HOM05D003086 ORTHO05D003347 5.6e-06 54.7 65 46.2
Nitab4.5_0000015g0220 Nicotiana tabacum HOM05D003086 ORTHO05D003347 5.6e-06 54.7 53 43.4
SalBow5G4530 Salvia bowleyana HOM05D003086 ORTHO05D003347 5.6e-06 54.7 46 56.5
Sc23g0002030 Simmondsia chinensis HOM05D003086 ORTHO05D003347 5.6e-06 54.7 61 47.5
TAR629G1883 Trochodendron aralioides HOM05D003086 ORTHO05D003347 5.6e-06 54.7 48 52.1
Cfa004384 Carpinus fangiana HOM05D007433 ORTHO05D009199 7.3e-06 54.3 65 41.5
Cfa015968 Carpinus fangiana HOM05D003086 ORTHO05D003347 7.3e-06 54.3 48 52.1
Gohir.A11G098500 Gossypium hirsutum HOM05D003086 ORTHO05D003347 7.3e-06 54.3 48 52.1
Gohir.D11G103100 Gossypium hirsutum HOM05D003086 ORTHO05D003347 7.3e-06 54.3 48 52.1
Gohir.D12G249000 Gossypium hirsutum HOM05D003086 ORTHO05D003347 7.3e-06 54.3 51 54.9
Gorai.007G110300 Gossypium raimondii HOM05D003086 ORTHO05D003347 7.3e-06 54.3 48 52.1
Gorai.008G267200 Gossypium raimondii HOM05D003086 ORTHO05D003347 7.3e-06 54.3 51 54.9
MD07G1294800 Malus domestica HOM05D003086 ORTHO05D003347 7.3e-06 54.3 48 54.2
Cpa.g.sc96.51 Carica papaya HOM05D003086 ORTHO05D003347 9.5e-06 53.9 48 54.2
Lalb_Chr23g0271671 Lupinus albus HOM05D003086 ORTHO05D003347 9.5e-06 53.9 48 54.2


User provided reference genes

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